Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:07:01 (3754269): wrapper (7.7.26015): starting
20:07:01 (3754269): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 20:07:01] Arguments: --nthreads 4
[2026-02-08 20:07:01] Threads: 4
[2026-02-08 20:07:01] Checking for CVMFS
[2026-02-08 20:07:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 20:07:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 20:07:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 20:07:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 20:07:01] 2.9.2.0 3088581 3517 89680 156030 2 49 36415667 36864000 0 130560 0 1909511 99.986 133580 14000 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 20:07:01] CVMFS is ok
[2026-02-08 20:07:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 20:07:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 20:07:01] Further information can be found at the LHC@home message board.
[2026-02-08 20:07:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 20:07:01] Checking for apptainer binary...
[2026-02-08 20:07:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 20:07:01] Running /usr/bin/apptainer --version
[2026-02-08 20:07:01] apptainer version 1.4.1-1.1
[2026-02-08 20:07:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 20:07:01] thA315b
[2026-02-08 20:07:01] apptainer works
[2026-02-08 20:07:01] Set ATHENA_PROC_NUMBER=4
[2026-02-08 20:07:01] Set ATHENA_CORE_NUMBER=4
[2026-02-08 20:07:01] Starting ATLAS job with PandaID=7007172059
[2026-02-08 20:07:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 21:42:26]  *** The last 200 lines of the pilot log: ***
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | job 7007172059 has completed (purged errors)
[2026-02-08 21:42:26] 2026-02-08 20:41:53,860 | INFO     | overall cleanup function is called
[2026-02-08 21:42:26] 2026-02-08 20:41:54,864 | INFO     | --- collectZombieJob: --- 10, [3762886]
[2026-02-08 21:42:26] 2026-02-08 20:41:54,864 | INFO     | zombie collector waiting for pid 3762886
[2026-02-08 21:42:26] 2026-02-08 20:41:54,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 21:42:26] 2026-02-08 20:41:54,864 | INFO     | collected zombie processes
[2026-02-08 21:42:26] 2026-02-08 20:41:54,864 | INFO     | will attempt to kill all subprocesses of pid=3762886
[2026-02-08 21:42:26] 2026-02-08 20:41:54,909 | INFO     | process IDs to be killed: [3762886] (in reverse order)
[2026-02-08 21:42:26] 2026-02-08 20:41:54,936 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 21:42:26] 2026-02-08 20:41:54,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 21:42:26] 2026-02-08 20:41:54,938 | INFO     | did not find any defunct processes belonging to 3762886
[2026-02-08 21:42:26] 2026-02-08 20:41:54,939 | INFO     | did not find any defunct processes belonging to 3762886
[2026-02-08 21:42:26] 2026-02-08 20:41:54,939 | INFO     | ready for new job
[2026-02-08 21:42:26] 2026-02-08 20:41:54,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 21:42:26] 2026-02-08 20:41:54,940 | INFO     | **************************************
[2026-02-08 21:42:26] 2026-02-08 20:41:54,940 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 21:42:26] 2026-02-08 20:41:54,940 | INFO     | **************************************
[2026-02-08 21:42:26] 2026-02-08 20:41:54,940 | INFO     | 
[2026-02-08 21:42:26] 2026-02-08 20:41:54,940 | INFO     | architecture information:
[2026-02-08 21:42:26] 2026-02-08 20:41:54,940 | INFO     | executing command: cat /etc/os-release
[2026-02-08 21:42:26] 2026-02-08 20:41:54,949 | INFO     | cat /etc/os-release:
[2026-02-08 21:42:26] NAME="CentOS Linux"
[2026-02-08 21:42:26] VERSION="7 (Core)"
[2026-02-08 21:42:26] ID="centos"
[2026-02-08 21:42:26] ID_LIKE="rhel fedora"
[2026-02-08 21:42:26] VERSION_ID="7"
[2026-02-08 21:42:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 21:42:26] ANSI_COLOR="0;31"
[2026-02-08 21:42:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 21:42:26] HOME_URL="https://www.centos.org/"
[2026-02-08 21:42:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 21:42:26] 
[2026-02-08 21:42:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 21:42:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 21:42:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 21:42:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 21:42:26] 
[2026-02-08 21:42:26] 2026-02-08 20:41:54,950 | INFO     | **************************************
[2026-02-08 21:42:26] 2026-02-08 20:41:55,453 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 21:42:26] 2026-02-08 20:41:55,467 | INFO     | sufficient remaining disk space (318816387072 B)
[2026-02-08 21:42:26] 2026-02-08 20:41:55,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 21:42:26] 2026-02-08 20:41:55,467 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 21:42:26] 2026-02-08 20:41:55,467 | INFO     | update_server=False
[2026-02-08 21:42:26] 2026-02-08 20:41:55,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 21:42:26] 2026-02-08 20:41:55,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 21:42:26] 2026-02-08 20:41:55,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 21:42:26] 2026-02-08 20:41:55,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 21:42:26] 2026-02-08 20:41:55,468 | INFO     | aborting loop
[2026-02-08 21:42:26] 2026-02-08 20:41:55,988 | INFO     | all job control threads have been joined
[2026-02-08 21:42:26] 2026-02-08 20:41:56,431 | INFO     | all payload control threads have been joined
[2026-02-08 21:42:26] 2026-02-08 20:41:56,473 | INFO     | [job] retrieve thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:56,473 | INFO     | [job] queue monitor thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:56,474 | INFO     | [job] job monitor thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:56,572 | INFO     | all data control threads have been joined
[2026-02-08 21:42:26] 2026-02-08 20:41:56,732 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:56,993 | INFO     | [job] control thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,260 | INFO     | [payload] validate_post thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,413 | INFO     | [payload] failed_post thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,437 | INFO     | [payload] control thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,474 | INFO     | [data] copytool_out thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,578 | INFO     | [data] control thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,657 | INFO     | [job] validate thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,737 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,797 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:57,901 | INFO     | [data] copytool_in thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:41:58,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 21:42:26] 2026-02-08 20:42:02,403 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:42:06,323 | INFO     | job.realtimelogging is not enabled
[2026-02-08 21:42:26] 2026-02-08 20:42:07,329 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 21:42:26] 2026-02-08 20:42:20,158 | INFO     | [monitor] cgroup control has ended
[2026-02-08 21:42:26] 2026-02-08 20:42:21,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848641132352)>', '<ExcThread(monitor, started 139848128116480)>']
[2026-02-08 21:42:26] 2026-02-08 20:42:25,740 | INFO     | PID=3758381 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 21:42:26] 2026-02-08 20:42:25,740 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 21:42:26] 2026-02-08 20:42:25,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 21:42:26] 2026-02-08 20:42:25,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 21:42:26] 2026-02-08 20:42:25,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 21:42:26] 2026-02-08 20:42:25,740 | INFO     | [monitor] control thread has ended
[2026-02-08 21:42:26] 2026-02-08 20:42:26,181 | INFO     | all workflow threads have been joined
[2026-02-08 21:42:26] 2026-02-08 20:42:26,181 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 21:42:26] 2026-02-08 20:42:26,182 | INFO     | traces error code: 0
[2026-02-08 21:42:26] 2026-02-08 20:42:26,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 21:42:26] 2026-02-08 20:42:26,234 [wrapper] ==== pilot stdout END ====
[2026-02-08 21:42:26] 2026-02-08 20:42:26,237 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 21:42:26] 2026-02-08 20:42:26,239 [wrapper] pilotpid: 3758381
[2026-02-08 21:42:26] 2026-02-08 20:42:26,242 [wrapper] Pilot exit status: 0
[2026-02-08 21:42:26] 2026-02-08 20:42:26,250 [wrapper] pandaids: 7007172059
[2026-02-08 21:42:26] 2026-02-08 20:42:26,268 [wrapper] cleanup supervisor_pilot 3767907 3758382
[2026-02-08 21:42:26] 2026-02-08 20:42:26,271 [wrapper] Test setup, not cleaning
[2026-02-08 21:42:26] 2026-02-08 20:42:26,273 [wrapper] apfmon messages muted
[2026-02-08 21:42:26] 2026-02-08 20:42:26,276 [wrapper] ==== wrapper stdout END ====
[2026-02-08 21:42:26] 2026-02-08 20:42:26,278 [wrapper] ==== wrapper stderr END ====
[2026-02-08 21:42:26]  *** Error codes and diagnostics ***
[2026-02-08 21:42:26]     "exeErrorCode": 0,
[2026-02-08 21:42:26]     "exeErrorDiag": "",
[2026-02-08 21:42:26]     "pilotErrorCode": 0,
[2026-02-08 21:42:26]     "pilotErrorDiag": "",
[2026-02-08 21:42:26]  *** Listing of results directory ***
[2026-02-08 21:42:26] total 949304
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc    584627 Feb  8 04:10 pilot3.tar.gz
[2026-02-08 21:42:26] -rwx------ 1 boinc boinc     36322 Feb  8 04:15 runpilot2-wrapper.sh
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc      5111 Feb  8 04:17 queuedata.json
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc       100 Feb  8 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 21:42:26] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 20:07 run_atlas
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc       105 Feb  8 20:07 job.xml
[2026-02-08 21:42:26] -rw-r--r-- 2 boinc boinc 674562718 Feb  8 20:07 EVNT.48431094._000416.pool.root.1
[2026-02-08 21:42:26] -rw-r--r-- 2 boinc boinc    597961 Feb  8 20:07 input.tar.gz
[2026-02-08 21:42:26] -rw-r--r-- 2 boinc boinc     15845 Feb  8 20:07 start_atlas.sh
[2026-02-08 21:42:26] drwxrwx--x 2 boinc boinc      4096 Feb  8 20:07 shared
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc         0 Feb  8 20:07 boinc_setup_complete
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc      6443 Feb  8 20:07 init_data.xml
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc         0 Feb  8 20:07 boinc_lockfile
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc      2553 Feb  8 20:07 pandaJob.out
[2026-02-08 21:42:26] -rw------- 1 boinc boinc   1009496 Feb  8 20:07 agis_schedconf.cvmfs.json
[2026-02-08 21:42:26] -rw------- 1 boinc boinc   1513088 Feb  8 20:07 agis_ddmendpoints.agis.ALL.json
[2026-02-08 21:42:26] -rw------- 1 boinc boinc       417 Feb  8 20:07 workernode_map.json
[2026-02-08 21:42:26] drwx------ 5 boinc boinc      4096 Feb  8 20:07 pilot3
[2026-02-08 21:42:26] -rw------- 1 boinc boinc 291389826 Feb  8 21:41 HITS.48431096._009719.pool.root.1
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc       530 Feb  8 21:41 boinc_task_state.xml
[2026-02-08 21:42:26] -rw------- 1 boinc boinc        95 Feb  8 21:41 pilot_heartbeat.json
[2026-02-08 21:42:26] -rw------- 1 boinc boinc      1030 Feb  8 21:41 memory_monitor_summary.json
[2026-02-08 21:42:26] -rw------- 1 boinc boinc    275417 Feb  8 21:41 log.48431096._009719.job.log.tgz.1
[2026-02-08 21:42:26] -rw------- 1 boinc boinc      6285 Feb  8 21:41 heartbeat.json
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc      8192 Feb  8 21:41 boinc_mmap_file
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc        27 Feb  8 21:41 wrapper_checkpoint.txt
[2026-02-08 21:42:26] -rw------- 1 boinc boinc      4820 Feb  8 21:42 pilotlog.txt
[2026-02-08 21:42:26] -rw------- 1 boinc boinc    826829 Feb  8 21:42 log.48431096._009719.job.log.1
[2026-02-08 21:42:26] -rw------- 1 boinc boinc       357 Feb  8 21:42 output.list
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc       620 Feb  8 21:42 runtime_log
[2026-02-08 21:42:26] -rw------- 1 boinc boinc   1116160 Feb  8 21:42 result.tar.gz
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc      8901 Feb  8 21:42 runtime_log.err
[2026-02-08 21:42:26] -rw------- 1 boinc boinc       658 Feb  8 21:42 5WVKDmFSA98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmepcKDm2KE51n.diag
[2026-02-08 21:42:26] -rw-r--r-- 1 boinc boinc     11408 Feb  8 21:42 stderr.txt
[2026-02-08 21:42:26] HITS file was successfully produced:
[2026-02-08 21:42:26] -rw------- 1 boinc boinc 291389826 Feb  8 21:41 shared/HITS.pool.root.1
[2026-02-08 21:42:26]  *** Contents of shared directory: ***
[2026-02-08 21:42:26] total 945020
[2026-02-08 21:42:26] -rw-r--r-- 2 boinc boinc 674562718 Feb  8 20:07 ATLAS.root_0
[2026-02-08 21:42:26] -rw-r--r-- 2 boinc boinc    597961 Feb  8 20:07 input.tar.gz
[2026-02-08 21:42:26] -rw-r--r-- 2 boinc boinc     15845 Feb  8 20:07 start_atlas.sh
[2026-02-08 21:42:26] -rw------- 1 boinc boinc 291389826 Feb  8 21:41 HITS.pool.root.1
[2026-02-08 21:42:26] -rw------- 1 boinc boinc   1116160 Feb  8 21:42 result.tar.gz
21:42:27 (3754269): run_atlas exited; CPU time 21821.340326
21:42:27 (3754269): called boinc_finish(0)

</stderr_txt>
]]>

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