Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:03:07 (353292): wrapper (7.7.26015): starting
00:03:07 (353292): wrapper: running run_atlas (--nthreads 2)
[2026-02-09 00:03:07] Arguments: --nthreads 2
[2026-02-09 00:03:07] Threads: 2
[2026-02-09 00:03:07] Checking for CVMFS
[2026-02-09 00:03:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 00:03:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 00:03:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 00:03:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 00:03:08] 2.9.2.0 2935 3637 58988 156035 1 50 30590056 36864000 0 130560 0 1018079 99.976 132524 12280 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 00:03:08] CVMFS is ok
[2026-02-09 00:03:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 00:03:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 00:03:08] Further information can be found at the LHC@home message board.
[2026-02-09 00:03:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 00:03:08] Checking for apptainer binary...
[2026-02-09 00:03:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 00:03:08] Running /usr/bin/apptainer --version
[2026-02-09 00:03:08] apptainer version 1.4.1-1.1
[2026-02-09 00:03:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 00:03:08] magicA244
[2026-02-09 00:03:08] apptainer works
[2026-02-09 00:03:08] Set ATHENA_PROC_NUMBER=2
[2026-02-09 00:03:08] Set ATHENA_CORE_NUMBER=2
[2026-02-09 00:03:08] Starting ATLAS job with PandaID=7004226791
[2026-02-09 00:03:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 02:51:48]  *** The last 200 lines of the pilot log: ***
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | job 7004226791 has completed (purged errors)
[2026-02-09 02:51:48] 2026-02-09 01:50:44,333 | INFO     | overall cleanup function is called
[2026-02-09 02:51:48] 2026-02-09 01:50:44,786 | INFO     | PID=357320 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 02:51:48] 2026-02-09 01:50:45,339 | INFO     | --- collectZombieJob: --- 10, [361731]
[2026-02-09 02:51:48] 2026-02-09 01:50:45,339 | INFO     | zombie collector waiting for pid 361731
[2026-02-09 02:51:48] 2026-02-09 01:50:45,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 02:51:48] 2026-02-09 01:50:45,340 | INFO     | collected zombie processes
[2026-02-09 02:51:48] 2026-02-09 01:50:45,340 | INFO     | will attempt to kill all subprocesses of pid=361731
[2026-02-09 02:51:48] 2026-02-09 01:50:45,370 | INFO     | process IDs to be killed: [361731] (in reverse order)
[2026-02-09 02:51:48] 2026-02-09 01:50:45,391 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 02:51:48] 2026-02-09 01:50:45,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 02:51:48] 2026-02-09 01:50:45,391 | INFO     | did not find any defunct processes belonging to 361731
[2026-02-09 02:51:48] 2026-02-09 01:50:45,392 | INFO     | did not find any defunct processes belonging to 361731
[2026-02-09 02:51:48] 2026-02-09 01:50:45,392 | INFO     | ready for new job
[2026-02-09 02:51:48] 2026-02-09 01:50:45,392 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 02:51:48] 2026-02-09 01:50:45,393 | INFO     | **************************************
[2026-02-09 02:51:48] 2026-02-09 01:50:45,393 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 02:51:48] 2026-02-09 01:50:45,393 | INFO     | **************************************
[2026-02-09 02:51:48] 2026-02-09 01:50:45,393 | INFO     | 
[2026-02-09 02:51:48] 2026-02-09 01:50:45,393 | INFO     | architecture information:
[2026-02-09 02:51:48] 2026-02-09 01:50:45,393 | INFO     | executing command: cat /etc/os-release
[2026-02-09 02:51:48] 2026-02-09 01:50:45,402 | INFO     | cat /etc/os-release:
[2026-02-09 02:51:48] NAME="CentOS Linux"
[2026-02-09 02:51:48] VERSION="7 (Core)"
[2026-02-09 02:51:48] ID="centos"
[2026-02-09 02:51:48] ID_LIKE="rhel fedora"
[2026-02-09 02:51:48] VERSION_ID="7"
[2026-02-09 02:51:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 02:51:48] ANSI_COLOR="0;31"
[2026-02-09 02:51:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 02:51:48] HOME_URL="https://www.centos.org/"
[2026-02-09 02:51:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 02:51:48] 
[2026-02-09 02:51:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 02:51:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 02:51:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 02:51:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 02:51:48] 
[2026-02-09 02:51:48] 2026-02-09 01:50:45,402 | INFO     | **************************************
[2026-02-09 02:51:48] 2026-02-09 01:50:45,904 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 02:51:48] 2026-02-09 01:50:45,912 | INFO     | sufficient remaining disk space (490714693632 B)
[2026-02-09 02:51:48] 2026-02-09 01:50:45,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 02:51:48] 2026-02-09 01:50:45,912 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 02:51:48] 2026-02-09 01:50:45,912 | INFO     | update_server=False
[2026-02-09 02:51:48] 2026-02-09 01:50:45,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 02:51:48] 2026-02-09 01:50:45,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 02:51:48] 2026-02-09 01:50:45,942 | INFO     | all payload control threads have been joined
[2026-02-09 02:51:48] 2026-02-09 01:50:46,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 02:51:48] 2026-02-09 01:50:46,526 | INFO     | all data control threads have been joined
[2026-02-09 02:51:48] 2026-02-09 01:50:46,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 02:51:48] 2026-02-09 01:50:46,572 | INFO     | aborting loop
[2026-02-09 02:51:48] 2026-02-09 01:50:46,890 | INFO     | all job control threads have been joined
[2026-02-09 02:51:48] 2026-02-09 01:50:46,918 | INFO     | [job] retrieve thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:46,919 | INFO     | [job] queue monitor thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:46,948 | INFO     | [payload] control thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:46,951 | INFO     | [payload] validate_post thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:47,532 | INFO     | [data] control thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:47,578 | INFO     | [job] job monitor thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:47,896 | INFO     | [job] control thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:47,996 | INFO     | [payload] failed_post thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,083 | INFO     | [job] validate thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,149 | INFO     | [data] copytool_out thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,231 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,237 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,281 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,376 | INFO     | [data] copytool_in thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:48,864 | INFO     | job.realtimelogging is not enabled
[2026-02-09 02:51:48] 2026-02-09 01:50:49,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 02:51:48] 2026-02-09 01:50:49,869 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:50:53,415 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 02:51:48] 2026-02-09 01:51:16,884 | INFO     | PID=357320 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 02:51:48] 2026-02-09 01:51:16,885 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 02:51:48] 2026-02-09 01:51:16,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 02:51:48] 2026-02-09 01:51:16,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 02:51:48] 2026-02-09 01:51:41,911 | INFO     | [monitor] cgroup control has ended
[2026-02-09 02:51:48] 2026-02-09 01:51:43,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403837499200)>', '<ExcThread(monitor, started 140403185530624)>']
[2026-02-09 02:51:48] 2026-02-09 01:51:44,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 02:51:48] 2026-02-09 01:51:44,024 | INFO     | [monitor] control thread has ended
[2026-02-09 02:51:48] 2026-02-09 01:51:48,460 | INFO     | all workflow threads have been joined
[2026-02-09 02:51:48] 2026-02-09 01:51:48,461 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 02:51:48] 2026-02-09 01:51:48,461 | INFO     | traces error code: 0
[2026-02-09 02:51:48] 2026-02-09 01:51:48,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 02:51:48] 2026-02-09 01:51:48,505 [wrapper] ==== pilot stdout END ====
[2026-02-09 02:51:48] 2026-02-09 01:51:48,508 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 02:51:48] 2026-02-09 01:51:48,510 [wrapper] pilotpid: 357320
[2026-02-09 02:51:48] 2026-02-09 01:51:48,512 [wrapper] Pilot exit status: 0
[2026-02-09 02:51:48] 2026-02-09 01:51:48,517 [wrapper] pandaids: 7004226791
[2026-02-09 02:51:48] 2026-02-09 01:51:48,528 [wrapper] cleanup supervisor_pilot  367600 357321
[2026-02-09 02:51:48] 2026-02-09 01:51:48,530 [wrapper] Test setup, not cleaning
[2026-02-09 02:51:48] 2026-02-09 01:51:48,533 [wrapper] apfmon messages muted
[2026-02-09 02:51:48] 2026-02-09 01:51:48,534 [wrapper] ==== wrapper stdout END ====
[2026-02-09 02:51:48] 2026-02-09 01:51:48,536 [wrapper] ==== wrapper stderr END ====
[2026-02-09 02:51:48]  *** Error codes and diagnostics ***
[2026-02-09 02:51:48]     "exeErrorCode": 0,
[2026-02-09 02:51:48]     "exeErrorDiag": "",
[2026-02-09 02:51:48]     "pilotErrorCode": 0,
[2026-02-09 02:51:48]     "pilotErrorDiag": "",
[2026-02-09 02:51:48]  *** Listing of results directory ***
[2026-02-09 02:51:48] total 891916
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc      5111 Feb  8 08:07 queuedata.json
[2026-02-09 02:51:48] -rwx------ 1 boinc boinc     36322 Feb  8 08:07 runpilot2-wrapper.sh
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc    584627 Feb  8 08:08 pilot3.tar.gz
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc       100 Feb  9 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 02:51:48] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 00:03 run_atlas
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc       105 Feb  9 00:03 job.xml
[2026-02-09 02:51:48] -rw-r--r-- 2 boinc boinc 648821260 Feb  9 00:03 EVNT.48431111._000138.pool.root.1
[2026-02-09 02:51:48] -rw-r--r-- 2 boinc boinc    597958 Feb  9 00:03 input.tar.gz
[2026-02-09 02:51:48] -rw-r--r-- 2 boinc boinc     15845 Feb  9 00:03 start_atlas.sh
[2026-02-09 02:51:48] drwxrwx--x 2 boinc boinc      4096 Feb  9 00:03 shared
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc         0 Feb  9 00:03 boinc_setup_complete
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc      6208 Feb  9 00:03 init_data.xml
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc         0 Feb  9 00:03 boinc_lockfile
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc      2544 Feb  9 00:03 pandaJob.out
[2026-02-09 02:51:48] -rw------- 1 boinc boinc   1009504 Feb  9 00:03 agis_schedconf.cvmfs.json
[2026-02-09 02:51:48] -rw------- 1 boinc boinc   1513088 Feb  9 00:03 agis_ddmendpoints.agis.ALL.json
[2026-02-09 02:51:48] -rw------- 1 boinc boinc       419 Feb  9 00:03 workernode_map.json
[2026-02-09 02:51:48] drwx------ 5 boinc boinc      4096 Feb  9 00:03 pilot3
[2026-02-09 02:51:48] -rw------- 1 boinc boinc 257092735 Feb  9 02:50 HITS.48431113._006989.pool.root.1
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc       531 Feb  9 02:50 boinc_task_state.xml
[2026-02-09 02:51:48] -rw------- 1 boinc boinc      1014 Feb  9 02:50 memory_monitor_summary.json
[2026-02-09 02:51:48] -rw------- 1 boinc boinc    314558 Feb  9 02:50 log.48431113._006989.job.log.tgz.1
[2026-02-09 02:51:48] -rw------- 1 boinc boinc      6296 Feb  9 02:50 heartbeat.json
[2026-02-09 02:51:48] -rw------- 1 boinc boinc        95 Feb  9 02:51 pilot_heartbeat.json
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc      8192 Feb  9 02:51 boinc_mmap_file
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc        28 Feb  9 02:51 wrapper_checkpoint.txt
[2026-02-09 02:51:48] -rw------- 1 boinc boinc      4819 Feb  9 02:51 pilotlog.txt
[2026-02-09 02:51:48] -rw------- 1 boinc boinc   1424929 Feb  9 02:51 log.48431113._006989.job.log.1
[2026-02-09 02:51:48] -rw------- 1 boinc boinc       357 Feb  9 02:51 output.list
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc       620 Feb  9 02:51 runtime_log
[2026-02-09 02:51:48] -rw------- 1 boinc boinc   1761280 Feb  9 02:51 result.tar.gz
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc      8912 Feb  9 02:51 runtime_log.err
[2026-02-09 02:51:48] -rw------- 1 boinc boinc       662 Feb  9 02:51 ALmNDmd4D98n9Rq4apOajLDm4fhM0noT9bVooX4SDm6dcKDmnQKKbn.diag
[2026-02-09 02:51:48] -rw-r--r-- 1 boinc boinc     11620 Feb  9 02:51 stderr.txt
[2026-02-09 02:51:48] HITS file was successfully produced:
[2026-02-09 02:51:48] -rw------- 1 boinc boinc 257092735 Feb  9 02:50 shared/HITS.pool.root.1
[2026-02-09 02:51:48]  *** Contents of shared directory: ***
[2026-02-09 02:51:48] total 887012
[2026-02-09 02:51:48] -rw-r--r-- 2 boinc boinc 648821260 Feb  9 00:03 ATLAS.root_0
[2026-02-09 02:51:48] -rw-r--r-- 2 boinc boinc    597958 Feb  9 00:03 input.tar.gz
[2026-02-09 02:51:48] -rw-r--r-- 2 boinc boinc     15845 Feb  9 00:03 start_atlas.sh
[2026-02-09 02:51:48] -rw------- 1 boinc boinc 257092735 Feb  9 02:50 HITS.pool.root.1
[2026-02-09 02:51:48] -rw------- 1 boinc boinc   1761280 Feb  9 02:51 result.tar.gz
02:51:50 (353292): run_atlas exited; CPU time 19676.062853
02:51:50 (353292): called boinc_finish(0)

</stderr_txt>
]]>

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