Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:02:00 (1055241): wrapper (7.7.26015): starting
04:02:00 (1055241): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 04:02:00] Arguments: --nthreads 12
[2026-02-08 04:02:00] Threads: 12
[2026-02-08 04:02:00] Checking for CVMFS
[2026-02-08 04:02:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 04:02:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 04:02:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 04:02:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 04:02:02] 2.11.5.0 3459277 99725 226452 156018 0 361 39235482 45568001 28711 130560 0 845776931 99.800 529454760 19729 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-02-08 04:02:02] CVMFS is ok
[2026-02-08 04:02:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 04:02:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 04:02:02] Further information can be found at the LHC@home message board.
[2026-02-08 04:02:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 04:02:02] Checking for apptainer binary...
[2026-02-08 04:02:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 04:02:02] Running /usr/bin/apptainer --version
[2026-02-08 04:02:02] apptainer version 1.4.1-1.el9
[2026-02-08 04:02:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 04:02:02] wns0066.triumf.lcg
[2026-02-08 04:02:02] apptainer works
[2026-02-08 04:02:02] Set ATHENA_PROC_NUMBER=12
[2026-02-08 04:02:02] Set ATHENA_CORE_NUMBER=12
[2026-02-08 04:02:03] Starting ATLAS job with PandaID=7004226717
[2026-02-08 04:02:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 04:07:12]  *** The last 200 lines of the pilot log: ***
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | wrong length of table data, x=[1770552245.0], y=[1122.0] (must be same and length>=4)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | could have reported an average CPU frequency of 2689 MHz (4 samples)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | ..............................
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . Timing measurements:
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . get job = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . initial setup = 25 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . payload setup = 30 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . stage-in = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . payload execution = 60 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . stage-out = 1 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . log creation = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | ..............................
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7004226717/pilotlog.txt
[2026-02-08 04:07:12] 2026-02-08 12:06:39,195 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-08 04:07:12] - Log from pilotlog.txt -
[2026-02-08 04:07:12] 2026-02-08 12:06:39,135 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7004226717/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,135 | INFO     | extracted standard info from prmon json
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | wrong length of table data, x=[1770552245.0], y=[1122.0] (must be same and length>=4)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | could have reported an average CPU frequency of 2689 MHz (4 samples)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | ..............................
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . Timing measurements:
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . get job = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . initial setup = 25 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . payload setup = 30 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . stage-in = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . payload execution = 60 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . stage-out = 1 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . log creation = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | ..............................
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7004226717/pilotlog.txt
[2026-02-08 04:07:12] 2026-02-08 12:06:39,195 | WARNING  | 
[2026-02-08 04:07:12] [begin log extracts]
[2026-02-08 04:07:12] - Log from pilotlog.txt -
[2026-02-08 04:07:12] 2026-02-08 12:06:39,135 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7004226717/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,135 | INFO     | extracted standard info from prmon json
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 04:07:12] 2026-02-08 12:06:39,136 | WARNING  | wrong length of table data, x=[1770552245.0], y=[1122.0] (must be same and length>=4)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | could have reported an average CPU frequency of 2689 MHz (4 samples)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | ..............................
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . Timing measurements:
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . get job = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . initial setup = 25 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . payload setup = 30 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . stage-in = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . payload execution = 60 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . stage-out = 1 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | . log creation = 0 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | ..............................
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-08 04:07:12] 2026-02-08 12:06:39,137 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7004226717/pilotlog.txt
[2026-02-08 04:07:12] [end log extracts]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,196 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,196 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | 
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | job summary report
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | --------------------------------------------------
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | PanDA job id: 7004226717
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | task id: 48431113
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-08 04:04:33,037 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | pilot state: failed 
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | transexitcode: 65
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | exeerrorcode: 65
[2026-02-08 04:07:12] 2026-02-08 12:06:39,656 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | exitcode: 65
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | cpuconsumptiontime: 14 s
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | nevents: 0
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | neventsw: 0
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | pid: 1067113
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | pgrp: 1067113
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | corecount: 12
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | event service: False
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | sizes: {0: 2282029, 1: 2282627, 2: 2282739, 4: 2283200, 95: 2306431, 96: 2310723, 98: 2310879, 214: 2311045}
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | --------------------------------------------------
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | 
[2026-02-08 04:07:12] 2026-02-08 12:06:39,657 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-02-08 04:07:12] 2026-02-08 12:06:39,744 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | job 7004226717 has completed (purged errors)
[2026-02-08 04:07:12] 2026-02-08 12:06:39,750 | INFO     | overall cleanup function is called
[2026-02-08 04:07:12] 2026-02-08 12:06:40,757 | INFO     | --- collectZombieJob: --- 10, [1067113]
[2026-02-08 04:07:12] 2026-02-08 12:06:40,757 | INFO     | zombie collector waiting for pid 1067113
[2026-02-08 04:07:12] 2026-02-08 12:06:40,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 04:07:12] 2026-02-08 12:06:40,757 | INFO     | collected zombie processes
[2026-02-08 04:07:12] 2026-02-08 12:06:40,757 | INFO     | will attempt to kill all subprocesses of pid=1067113
[2026-02-08 04:07:12] 2026-02-08 12:06:41,387 | INFO     | process IDs to be killed: [1067113] (in reverse order)
[2026-02-08 04:07:12] 2026-02-08 12:06:41,471 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 04:07:12] 2026-02-08 12:06:41,471 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 04:07:12] 2026-02-08 12:06:41,508 | INFO     | did not find any defunct processes belonging to 1067113
[2026-02-08 04:07:12] 2026-02-08 12:06:41,574 | INFO     | did not find any defunct processes belonging to 1067113
[2026-02-08 04:07:12] 2026-02-08 12:06:41,574 | INFO     | ready for new job
[2026-02-08 04:07:12] 2026-02-08 12:06:41,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 04:07:12] 2026-02-08 12:06:41,576 | INFO     | **************************************
[2026-02-08 04:07:12] 2026-02-08 12:06:41,576 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 04:07:12] 2026-02-08 12:06:41,576 | INFO     | **************************************
[2026-02-08 04:07:12] 2026-02-08 12:06:41,576 | INFO     | 
[2026-02-08 04:07:12] 2026-02-08 12:06:41,623 | INFO     | architecture information:
[2026-02-08 04:07:12] 2026-02-08 12:06:41,654 | INFO     | executing command: cat /etc/os-release
[2026-02-08 04:07:12] 2026-02-08 12:06:41,686 | INFO     | cat /etc/os-release:
[2026-02-08 04:07:12] NAME="CentOS Linux"
[2026-02-08 04:07:12] VERSION="7 (Core)"
[2026-02-08 04:07:12] ID="centos"
[2026-02-08 04:07:12] ID_LIKE="rhel fedora"
[2026-02-08 04:07:12] VERSION_ID="7"
[2026-02-08 04:07:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 04:07:12] ANSI_COLOR="0;31"
[2026-02-08 04:07:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 04:07:12] HOME_URL="https://www.centos.org/"
[2026-02-08 04:07:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 04:07:12] 
[2026-02-08 04:07:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 04:07:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 04:07:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 04:07:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 04:07:12] 
[2026-02-08 04:07:12] 2026-02-08 12:06:41,686 | INFO     | **************************************
[2026-02-08 04:07:12] 2026-02-08 12:06:42,190 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-02-08 04:07:12] 2026-02-08 12:06:42,209 | INFO     | sufficient remaining disk space (2012836003840 B)
[2026-02-08 04:07:12] 2026-02-08 12:06:42,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 04:07:12] 2026-02-08 12:06:42,210 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 04:07:12] 2026-02-08 12:06:42,210 | INFO     | update_server=False
[2026-02-08 04:07:12] 2026-02-08 12:06:42,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 04:07:12] 2026-02-08 12:06:42,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 04:07:12] 2026-02-08 12:06:42,210 | INFO     | aborting loop
[2026-02-08 04:07:12] 2026-02-08 12:06:42,332 | INFO     | all job control threads have been joined
[2026-02-08 04:07:12] 2026-02-08 12:06:42,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 04:07:12] 2026-02-08 12:06:42,891 | INFO     | all data control threads have been joined
[2026-02-08 04:07:12] 2026-02-08 12:06:43,094 | INFO     | all payload control threads have been joined
[2026-02-08 04:07:12] 2026-02-08 12:06:43,216 | INFO     | [job] job monitor thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,216 | INFO     | [job] retrieve thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,338 | INFO     | [job] control thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 04:07:12] 2026-02-08 12:06:43,456 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,883 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,883 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,890 | INFO     | [payload] validate_post thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:43,897 | INFO     | [data] control thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:44,016 | INFO     | [data] copytool_in thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:44,100 | INFO     | [payload] control thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:44,461 | INFO     | [job] validate thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:44,471 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:44,669 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 04:07:12] 2026-02-08 12:06:44,739 | INFO     | [payload] failed_post thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:45,398 | INFO     | [data] copytool_out thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:45,675 | INFO     | [job] queue monitor thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:06:46,542 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 04:07:12] 2026-02-08 12:07:01,709 | INFO     | [monitor] cgroup control has ended
[2026-02-08 04:07:12] 2026-02-08 12:07:01,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139738884814656)>', '<ExcThread(monitor, started 139737834714880)>']
[2026-02-08 04:07:12] 2026-02-08 12:07:06,917 | INFO     | all workflow threads have been joined
[2026-02-08 04:07:12] 2026-02-08 12:07:06,917 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 04:07:12] 2026-02-08 12:07:06,917 | INFO     | traces error code: 0
[2026-02-08 04:07:12] 2026-02-08 12:07:06,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 04:07:12] 2026-02-08 12:07:11,627 | INFO     | PID=1059176 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 04:07:12] 2026-02-08 12:07:11,627 | INFO     | .. there are 42 such processes running
[2026-02-08 04:07:12] 2026-02-08 12:07:11,628 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 04:07:12] 2026-02-08 12:07:11,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 04:07:12] 2026-02-08 12:07:11,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 04:07:12] 2026-02-08 12:07:11,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 04:07:12] 2026-02-08 12:07:11,629 | CRITICAL | thread 'MainThread' is not alive
[2026-02-08 04:07:12] 2026-02-08 12:07:11,629 | INFO     | [monitor] control thread has ended
[2026-02-08 04:07:12] 2026-02-08 12:07:11,864 [wrapper] ==== pilot stdout END ====
[2026-02-08 04:07:12] 2026-02-08 12:07:11,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 04:07:12] 2026-02-08 12:07:11,868 [wrapper] pilotpid: 1059176
[2026-02-08 04:07:12] 2026-02-08 12:07:11,869 [wrapper] Pilot exit status: 0
[2026-02-08 04:07:12] 2026-02-08 12:07:11,882 [wrapper] pandaids: 7004226717
[2026-02-08 04:07:12] 2026-02-08 12:07:11,931 [wrapper] cleanup supervisor_pilot 1059183 1059177
[2026-02-08 04:07:12] 2026-02-08 12:07:11,933 [wrapper] Test setup, not cleaning
[2026-02-08 04:07:12] 2026-02-08 12:07:11,935 [wrapper] apfmon messages muted
[2026-02-08 04:07:12] 2026-02-08 12:07:11,937 [wrapper] ==== wrapper stdout END ====
[2026-02-08 04:07:12] 2026-02-08 12:07:11,938 [wrapper] ==== wrapper stderr END ====
[2026-02-08 04:07:12]  *** Error codes and diagnostics ***
[2026-02-08 04:07:12]     "exeErrorCode": 65,
[2026-02-08 04:07:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-02-08 04:07:12]     "pilotErrorCode": 1305,
[2026-02-08 04:07:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-02-08 04:07:12]  *** Listing of results directory ***
[2026-02-08 04:07:12] total 633256
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc      5111 Feb  7 23:07 queuedata.json
[2026-02-08 04:07:12] -rwx------. 1 boinc boinc     36322 Feb  7 23:07 runpilot2-wrapper.sh
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc    584627 Feb  7 23:08 pilot3.tar.gz
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc       100 Feb  8 04:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 04:07:12] -rwxr-xr-x. 1 boinc boinc      7986 Feb  8 04:01 run_atlas
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc       105 Feb  8 04:01 job.xml
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc      6594 Feb  8 04:02 init_data.xml
[2026-02-08 04:07:12] -rw-r--r--. 2 boinc boinc 644307992 Feb  8 04:02 EVNT.48431111._000136.pool.root.1
[2026-02-08 04:07:12] -rw-r--r--. 2 boinc boinc     15845 Feb  8 04:02 start_atlas.sh
[2026-02-08 04:07:12] drwxrwx--x. 2 boinc boinc      4096 Feb  8 04:02 shared
[2026-02-08 04:07:12] -rw-r--r--. 2 boinc boinc    597951 Feb  8 04:02 input.tar.gz
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc         0 Feb  8 04:02 boinc_lockfile
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc      2545 Feb  8 04:02 pandaJob.out
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc   1009518 Feb  8 04:02 agis_schedconf.cvmfs.json
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc   1513088 Feb  8 04:02 agis_ddmendpoints.agis.ALL.json
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc       445 Feb  8 04:02 workernode_map.json
[2026-02-08 04:07:12] drwx------. 5 boinc boinc      4096 Feb  8 04:03 pilot3
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc       524 Feb  8 04:04 boinc_task_state.xml
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc       946 Feb  8 04:04 memory_monitor_summary.json
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc     21906 Feb  8 04:04 log.48431113._006915.job.log.tgz.1
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc      7043 Feb  8 04:06 heartbeat.json
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc        22 Feb  8 04:07 wrapper_checkpoint.txt
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc      8192 Feb  8 04:07 boinc_mmap_file
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc        95 Feb  8 04:07 pilot_heartbeat.json
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc       893 Feb  8 04:07 pilotlog.txt
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc     87380 Feb  8 04:07 log.48431113._006915.job.log.1
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc       188 Feb  8 04:07 output.list
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc       620 Feb  8 04:07 runtime_log
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc    122880 Feb  8 04:07 result.tar.gz
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc      8635 Feb  8 04:07 runtime_log.err
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc       643 Feb  8 04:07 A1nLDmd4D98n9Rq4apOajLDm4fhM0noT9bVooX4SDmIdcKDmsUQLxn.diag
[2026-02-08 04:07:12] -rw-r--r--. 1 boinc boinc     21783 Feb  8 04:07 stderr.txt
[2026-02-08 04:07:12] No HITS result produced
[2026-02-08 04:07:12]  *** Contents of shared directory: ***
[2026-02-08 04:07:12] total 629932
[2026-02-08 04:07:12] -rw-r--r--. 2 boinc boinc 644307992 Feb  8 04:02 ATLAS.root_0
[2026-02-08 04:07:12] -rw-r--r--. 2 boinc boinc     15845 Feb  8 04:02 start_atlas.sh
[2026-02-08 04:07:12] -rw-r--r--. 2 boinc boinc    597951 Feb  8 04:02 input.tar.gz
[2026-02-08 04:07:12] -rw-------. 1 boinc boinc    122880 Feb  8 04:07 result.tar.gz
04:07:14 (1055241): run_atlas exited; CPU time 23.077021
04:07:14 (1055241): called boinc_finish(0)

</stderr_txt>
]]>

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