Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
00:31:22 (1598277): wrapper (7.7.26015): starting
00:31:22 (1598277): wrapper: running run_atlas (--nthreads 12)
[2026-02-09 00:31:22] Arguments: --nthreads 12
[2026-02-09 00:31:22] Threads: 12
[2026-02-09 00:31:22] Checking for CVMFS
[2026-02-09 00:31:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 00:31:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 00:31:25] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 00:31:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 00:31:25] 2.12.7.0 5195 2765 67536 156045 3 50 3275557 4194305 917 130560 0 2953875 99.993 93916 2361 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-02-09 00:31:25] CVMFS is ok
[2026-02-09 00:31:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 00:31:25] Checking for apptainer binary...
[2026-02-09 00:31:25] apptainer is not installed, using version from CVMFS
[2026-02-09 00:31:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 00:31:25] Trebeth
[2026-02-09 00:31:25] apptainer works
[2026-02-09 00:31:25] Set ATHENA_PROC_NUMBER=12
[2026-02-09 00:31:25] Set ATHENA_CORE_NUMBER=12
[2026-02-09 00:31:25] Starting ATLAS job with PandaID=7000923863
[2026-02-09 00:31:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 01:41:50]  *** The last 200 lines of the pilot log: ***
[2026-02-09 01:41:50]  domain=
[2026-02-09 01:41:50]  filesize=416416
[2026-02-09 01:41:50]  filetype=log
[2026-02-09 01:41:50]  guid=0182ee12-8bba-4e7b-85a4-adb276979265
[2026-02-09 01:41:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-09 01:41:50]  is_altstaged=None
[2026-02-09 01:41:50]  is_tar=False
[2026-02-09 01:41:50]  lfn=log.48318018._002214.job.log.tgz.1
[2026-02-09 01:41:50]  mtime=0
[2026-02-09 01:41:50]  protocol_id=None
[2026-02-09 01:41:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-09 01:41:50]  replicas=None
[2026-02-09 01:41:50]  scope=mc23_13p6TeV
[2026-02-09 01:41:50]  status=None
[2026-02-09 01:41:50]  status_code=0
[2026-02-09 01:41:50]  storage_token=
[2026-02-09 01:41:50]  surl=/var/lib/boinc-client/slots/9/PanDA_Pilot-7000923863/log.48318018._002214.job.log.tgz.1
[2026-02-09 01:41:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/e4/log.48318018._002214.job.log.tgz.1
[2026-02-09 01:41:50]  workdir=None
[2026-02-09 01:41:50] ]
[2026-02-09 01:41:50] 2026-02-09 06:40:58,711 | INFO     | transferring file log.48318018._002214.job.log.tgz.1 from /var/lib/boinc-client/slots/9/PanDA_Pilot-7000923863/log.48318018._002214.job.log.tgz.1 to /var/lib/boinc
[2026-02-09 01:41:50] 2026-02-09 06:40:58,712 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/9/PanDA_Pilot-7000923863/log.48318018._002214.job.log.tgz.1 /var/lib/boinc-client/slots/9/log.483180
[2026-02-09 01:41:50] 2026-02-09 06:40:58,723 | INFO     | adding to output.list: log.48318018._002214.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/e4/log.48318018._002214.job.log.tg
[2026-02-09 01:41:50] 2026-02-09 06:40:58,723 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-09 01:41:50] 2026-02-09 06:40:58,723 | INFO     | summary of transferred files:
[2026-02-09 01:41:50] 2026-02-09 06:40:58,723 | INFO     |  -- lfn=log.48318018._002214.job.log.tgz.1, status_code=0, status=transferred
[2026-02-09 01:41:50] 2026-02-09 06:40:58,723 | INFO     | stage-out finished correctly
[2026-02-09 01:41:50] 2026-02-09 06:40:59,200 | INFO     | monitor loop #315: job 0:7000923863 is in state 'finished'
[2026-02-09 01:41:50] 2026-02-09 06:40:59,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-09 01:41:50] 2026-02-09 06:41:00,394 | INFO     | time since job start (4162s) is within the limit (349056.0s)
[2026-02-09 01:41:50] 2026-02-09 06:41:00,796 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-09 01:41:50] 2026-02-09 06:41:01,214 | INFO     | job 7000923863 has state=finished
[2026-02-09 01:41:50] 2026-02-09 06:41:01,214 | INFO     | preparing for final server update for job 7000923863 in state='finished'
[2026-02-09 01:41:50] 2026-02-09 06:41:01,214 | INFO     | reading metadata from: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000923863/jobReport.json
[2026-02-09 01:41:50] 2026-02-09 06:41:01,217 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/9/workernode_map.json
[2026-02-09 01:41:50] 2026-02-09 06:41:01,218 | INFO     | this job has now completed (state=finished)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,218 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,218 | INFO     | log transfer has been attempted: DONE
[2026-02-09 01:41:50] 2026-02-09 06:41:01,218 | INFO     | job 7000923863 has finished - writing final server update
[2026-02-09 01:41:50] 2026-02-09 06:41:01,219 | INFO     | total number of processed events: 400 (read)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,246 | INFO     | using path: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000923863/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,246 | INFO     | extracted standard info from prmon json
[2026-02-09 01:41:50] 2026-02-09 06:41:01,247 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 01:41:50] 2026-02-09 06:41:01,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 01:41:50] 2026-02-09 06:41:01,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 01:41:50] 2026-02-09 06:41:01,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 01:41:50] 2026-02-09 06:41:01,249 | INFO     | fitting pss+swap vs Time
[2026-02-09 01:41:50] 2026-02-09 06:41:01,249 | INFO     | sum of square deviations: 70364110.0
[2026-02-09 01:41:50] 2026-02-09 06:41:01,250 | INFO     | sum of deviations: -8359877979.999998
[2026-02-09 01:41:50] 2026-02-09 06:41:01,250 | INFO     | mean x: 1770617252.0
[2026-02-09 01:41:50] 2026-02-09 06:41:01,250 | INFO     | mean y: 2950365.098360656
[2026-02-09 01:41:50] 2026-02-09 06:41:01,250 | INFO     | intersect: 210367924440.70178
[2026-02-09 01:41:50] 2026-02-09 06:41:01,250 | INFO     | chi2: 0.18526222818253876
[2026-02-09 01:41:50] 2026-02-09 06:41:01,250 | INFO     | current memory leak: -118.81 B/s (using 61 data points, chi2=0.19)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,251 | INFO     | could have reported an average CPU frequency of 2695 MHz (6 samples)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,251 | INFO     | ..............................
[2026-02-09 01:41:50] 2026-02-09 06:41:01,251 | INFO     | . Timing measurements:
[2026-02-09 01:41:50] 2026-02-09 06:41:01,251 | INFO     | . get job = 0 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,251 | INFO     | . initial setup = 6 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,251 | INFO     | . payload setup = 4 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,252 | INFO     | . stage-in = 0 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,252 | INFO     | . payload execution = 4139 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,252 | INFO     | . stage-out = 0 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,252 | INFO     | . log creation = 0 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,252 | INFO     | ..............................
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | 
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | job summary report
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | --------------------------------------------------
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | PanDA job id: 7000923863
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | task id: 48318018
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | errors: (none)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | pilot state: finished 
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | transexitcode: 0
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | exeerrorcode: 0
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | exeerrordiag: 
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | exitcode: 0
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | exitmsg: OK
[2026-02-09 01:41:50] 2026-02-09 06:41:01,339 | INFO     | cpuconsumptiontime: 44360 s
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | nevents: 400
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | neventsw: 0
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | pid: 1607453
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | pgrp: 1607453
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | corecount: 12
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | event service: False
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | sizes: {0: 2283042, 11: 2283042, 4147: 2308953, 4149: 2317965, 4151: 2318215}
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | --------------------------------------------------
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | 
[2026-02-09 01:41:50] 2026-02-09 06:41:01,340 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/9
[2026-02-09 01:41:50] 2026-02-09 06:41:01,359 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 01:41:50] 2026-02-09 06:41:01,361 | INFO     | job 7000923863 has completed (purged errors)
[2026-02-09 01:41:50] 2026-02-09 06:41:01,362 | INFO     | overall cleanup function is called
[2026-02-09 01:41:50] 2026-02-09 06:41:02,368 | INFO     | --- collectZombieJob: --- 10, [1607453]
[2026-02-09 01:41:50] 2026-02-09 06:41:02,368 | INFO     | zombie collector waiting for pid 1607453
[2026-02-09 01:41:50] 2026-02-09 06:41:02,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 01:41:50] 2026-02-09 06:41:02,368 | INFO     | collected zombie processes
[2026-02-09 01:41:50] 2026-02-09 06:41:02,369 | INFO     | will attempt to kill all subprocesses of pid=1607453
[2026-02-09 01:41:50] 2026-02-09 06:41:02,525 | INFO     | process IDs to be killed: [1607453] (in reverse order)
[2026-02-09 01:41:50] 2026-02-09 06:41:02,576 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 01:41:50] 2026-02-09 06:41:02,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 01:41:50] 2026-02-09 06:41:02,582 | INFO     | did not find any defunct processes belonging to 1607453
[2026-02-09 01:41:50] 2026-02-09 06:41:02,587 | INFO     | did not find any defunct processes belonging to 1607453
[2026-02-09 01:41:50] 2026-02-09 06:41:02,587 | INFO     | ready for new job
[2026-02-09 01:41:50] 2026-02-09 06:41:02,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 01:41:50] 2026-02-09 06:41:02,589 | INFO     | **************************************
[2026-02-09 01:41:50] 2026-02-09 06:41:02,589 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 01:41:50] 2026-02-09 06:41:02,589 | INFO     | **************************************
[2026-02-09 01:41:50] 2026-02-09 06:41:02,590 | INFO     | 
[2026-02-09 01:41:50] 2026-02-09 06:41:02,611 | INFO     | architecture information:
[2026-02-09 01:41:50] 2026-02-09 06:41:02,611 | INFO     | executing command: cat /etc/os-release
[2026-02-09 01:41:50] 2026-02-09 06:41:02,624 | INFO     | cat /etc/os-release:
[2026-02-09 01:41:50] NAME="CentOS Linux"
[2026-02-09 01:41:50] VERSION="7 (Core)"
[2026-02-09 01:41:50] ID="centos"
[2026-02-09 01:41:50] ID_LIKE="rhel fedora"
[2026-02-09 01:41:50] VERSION_ID="7"
[2026-02-09 01:41:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 01:41:50] ANSI_COLOR="0;31"
[2026-02-09 01:41:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 01:41:50] HOME_URL="https://www.centos.org/"
[2026-02-09 01:41:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 01:41:50] 
[2026-02-09 01:41:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 01:41:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 01:41:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 01:41:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 01:41:50] 
[2026-02-09 01:41:50] 2026-02-09 06:41:02,624 | INFO     | **************************************
[2026-02-09 01:41:50] 2026-02-09 06:41:03,127 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2026-02-09 01:41:50] 2026-02-09 06:41:03,142 | INFO     | sufficient remaining disk space (372731019264 B)
[2026-02-09 01:41:50] 2026-02-09 06:41:03,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 01:41:50] 2026-02-09 06:41:03,143 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 01:41:50] 2026-02-09 06:41:03,143 | INFO     | update_server=False
[2026-02-09 01:41:50] 2026-02-09 06:41:03,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 01:41:50] 2026-02-09 06:41:03,143 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 01:41:50] 2026-02-09 06:41:03,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 01:41:50] 2026-02-09 06:41:03,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 01:41:50] 2026-02-09 06:41:03,144 | INFO     | aborting loop
[2026-02-09 01:41:50] 2026-02-09 06:41:04,091 | INFO     | all data control threads have been joined
[2026-02-09 01:41:50] 2026-02-09 06:41:04,100 | INFO     | all payload control threads have been joined
[2026-02-09 01:41:50] 2026-02-09 06:41:04,148 | INFO     | [job] retrieve thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:04,148 | INFO     | [job] job monitor thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:04,149 | INFO     | [job] queue monitor thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:04,252 | INFO     | [data] copytool_in thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:04,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 01:41:50] 2026-02-09 06:41:04,388 | INFO     | [payload] validate_post thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:04,527 | INFO     | all job control threads have been joined
[2026-02-09 01:41:50] 2026-02-09 06:41:05,096 | INFO     | [data] control thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,104 | INFO     | [payload] control thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,165 | INFO     | [payload] failed_post thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,197 | INFO     | [job] validate thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,457 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,469 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,532 | INFO     | [job] control thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,532 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:05,540 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:06,293 | INFO     | [data] copytool_out thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:07,148 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 01:41:50] 2026-02-09 06:41:33,679 | INFO     | PID=1602653 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 01:41:50] 2026-02-09 06:41:33,679 | INFO     | .. there are 2 such processes running
[2026-02-09 01:41:50] 2026-02-09 06:41:33,680 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 01:41:50] 2026-02-09 06:41:33,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 01:41:50] 2026-02-09 06:41:33,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 01:41:50] 2026-02-09 06:41:45,163 | INFO     | [monitor] cgroup control has ended
[2026-02-09 01:41:50] 2026-02-09 06:41:45,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627025389376)>', '<ExcThread(monitor, started 139626366891776)>']
[2026-02-09 01:41:50] 2026-02-09 06:41:45,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 01:41:50] 2026-02-09 06:41:45,736 | INFO     | [monitor] control thread has ended
[2026-02-09 01:41:50] 2026-02-09 06:41:50,676 | INFO     | all workflow threads have been joined
[2026-02-09 01:41:50] 2026-02-09 06:41:50,676 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 01:41:50] 2026-02-09 06:41:50,676 | INFO     | traces error code: 0
[2026-02-09 01:41:50] 2026-02-09 06:41:50,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 01:41:50] 2026-02-09 06:41:50,776 [wrapper] ==== pilot stdout END ====
[2026-02-09 01:41:50] 2026-02-09 06:41:50,778 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 01:41:50] 2026-02-09 06:41:50,779 [wrapper] pilotpid: 1602653
[2026-02-09 01:41:50] 2026-02-09 06:41:50,781 [wrapper] Pilot exit status: 0
[2026-02-09 01:41:50] 2026-02-09 06:41:50,787 [wrapper] pandaids: 7000923863
[2026-02-09 01:41:50] 2026-02-09 06:41:50,816 [wrapper] cleanup supervisor_pilot 1625395 1602654
[2026-02-09 01:41:50] 2026-02-09 06:41:50,819 [wrapper] Test setup, not cleaning
[2026-02-09 01:41:50] 2026-02-09 06:41:50,821 [wrapper] apfmon messages muted
[2026-02-09 01:41:50] 2026-02-09 06:41:50,823 [wrapper] ==== wrapper stdout END ====
[2026-02-09 01:41:50] 2026-02-09 06:41:50,826 [wrapper] ==== wrapper stderr END ====
[2026-02-09 01:41:50]  *** Error codes and diagnostics ***
[2026-02-09 01:41:50]     "exeErrorCode": 0,
[2026-02-09 01:41:50]     "exeErrorDiag": "",
[2026-02-09 01:41:50]     "pilotErrorCode": 0,
[2026-02-09 01:41:50]     "pilotErrorDiag": "",
[2026-02-09 01:41:50]  *** Listing of results directory ***
[2026-02-09 01:41:50] total 673128
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc    584627 Feb  7 17:56 pilot3.tar.gz
[2026-02-09 01:41:50] -rwx------ 1 boinc boinc     36322 Feb  7 18:00 runpilot2-wrapper.sh
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc      5111 Feb  7 18:00 queuedata.json
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc       100 Feb  9 00:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 01:41:50] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 00:31 run_atlas
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc       105 Feb  9 00:31 job.xml
[2026-02-09 01:41:50] -rw-r--r-- 2 boinc boinc     15845 Feb  9 00:31 start_atlas.sh
[2026-02-09 01:41:50] drwxrwx--x 2 boinc boinc      4096 Feb  9 00:31 shared
[2026-02-09 01:41:50] -rw-r--r-- 2 boinc boinc    597952 Feb  9 00:31 input.tar.gz
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc      7579 Feb  9 00:31 init_data.xml
[2026-02-09 01:41:50] -rw-r--r-- 2 boinc boinc 499243217 Feb  9 00:31 EVNT.48318016._000021.pool.root.1
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc         0 Feb  9 00:31 boinc_lockfile
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc      2520 Feb  9 00:31 pandaJob.out
[2026-02-09 01:41:50] -rw------- 1 boinc boinc        50 Feb  9 00:31 setup.sh.local
[2026-02-09 01:41:50] -rw------- 1 boinc boinc   1009512 Feb  9 00:31 agis_schedconf.cvmfs.json
[2026-02-09 01:41:50] -rw------- 1 boinc boinc   1513088 Feb  9 00:31 agis_ddmendpoints.agis.ALL.json
[2026-02-09 01:41:50] -rw------- 1 boinc boinc       430 Feb  9 00:31 workernode_map.json
[2026-02-09 01:41:50] drwx------ 5 boinc boinc      4096 Feb  9 00:31 pilot3
[2026-02-09 01:41:50] -rw------- 1 boinc boinc 184002703 Feb  9 01:40 HITS.48318018._002214.pool.root.1
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc       530 Feb  9 01:40 boinc_task_state.xml
[2026-02-09 01:41:50] -rw------- 1 boinc boinc      1027 Feb  9 01:40 memory_monitor_summary.json
[2026-02-09 01:41:50] -rw------- 1 boinc boinc    416416 Feb  9 01:40 log.48318018._002214.job.log.tgz.1
[2026-02-09 01:41:50] -rw------- 1 boinc boinc      6341 Feb  9 01:41 heartbeat.json
[2026-02-09 01:41:50] -rw------- 1 boinc boinc        95 Feb  9 01:41 pilot_heartbeat.json
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc      8192 Feb  9 01:41 boinc_mmap_file
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc        27 Feb  9 01:41 wrapper_checkpoint.txt
[2026-02-09 01:41:50] -rw------- 1 boinc boinc      4827 Feb  9 01:41 pilotlog.txt
[2026-02-09 01:41:50] -rw------- 1 boinc boinc    627475 Feb  9 01:41 log.48318018._002214.job.log.1
[2026-02-09 01:41:50] -rw------- 1 boinc boinc       357 Feb  9 01:41 output.list
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc       620 Feb  9 01:41 runtime_log
[2026-02-09 01:41:50] -rw------- 1 boinc boinc   1064960 Feb  9 01:41 result.tar.gz
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc      9403 Feb  9 01:41 runtime_log.err
[2026-02-09 01:41:50] -rw------- 1 boinc boinc       650 Feb  9 01:41 FN6MDmoS688nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPRcKDmaFfAnn.diag
[2026-02-09 01:41:50] -rw-r--r-- 1 boinc boinc     20857 Feb  9 01:41 stderr.txt
[2026-02-09 01:41:50] HITS file was successfully produced:
[2026-02-09 01:41:50] -rw------- 1 boinc boinc 184002703 Feb  9 01:40 shared/HITS.pool.root.1
[2026-02-09 01:41:50]  *** Contents of shared directory: ***
[2026-02-09 01:41:50] total 668884
[2026-02-09 01:41:50] -rw-r--r-- 2 boinc boinc     15845 Feb  9 00:31 start_atlas.sh
[2026-02-09 01:41:50] -rw-r--r-- 2 boinc boinc    597952 Feb  9 00:31 input.tar.gz
[2026-02-09 01:41:50] -rw-r--r-- 2 boinc boinc 499243217 Feb  9 00:31 ATLAS.root_0
[2026-02-09 01:41:50] -rw------- 1 boinc boinc 184002703 Feb  9 01:40 HITS.pool.root.1
[2026-02-09 01:41:50] -rw------- 1 boinc boinc   1064960 Feb  9 01:41 result.tar.gz
01:41:52 (1598277): run_atlas exited; CPU time 44442.449479
01:41:52 (1598277): called boinc_finish(0)

</stderr_txt>
]]>

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