Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
08:59:41 (21374): wrapper (7.7.26015): starting
08:59:41 (21374): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 08:59:41] Arguments: --nthreads 8
[2026-02-08 08:59:41] Threads: 8
[2026-02-08 08:59:41] Checking for CVMFS
[2026-02-08 08:59:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 08:59:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 08:59:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 08:59:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 08:59:42] 2.11.0.0 4180 171823 89572 156012 2 50 2801908 4096001 0 130560 3 11378437 99.519 12070656 509 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-08 08:59:42] CVMFS is ok
[2026-02-08 08:59:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 08:59:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 08:59:42] Further information can be found at the LHC@home message board.
[2026-02-08 08:59:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 08:59:42] Checking for apptainer binary...
[2026-02-08 08:59:42] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-08 08:59:42] apptainer is not installed, using version from CVMFS
[2026-02-08 08:59:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 08:59:42] WARNING: Environment variable TMPDIR already has value [/tmp/job_11082948/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node388
[2026-02-08 08:59:42] apptainer works
[2026-02-08 08:59:42] Set ATHENA_PROC_NUMBER=8
[2026-02-08 08:59:42] Set ATHENA_CORE_NUMBER=8
[2026-02-08 08:59:42] Starting ATLAS job with PandaID=7000878542
[2026-02-08 08:59:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11082948/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 09:46:59]  *** The last 200 lines of the pilot log: ***
[2026-02-08 09:46:59]  filetype=log
[2026-02-08 09:46:59]  guid=92cbaa83-23a7-4d2b-8395-5f4030563577
[2026-02-08 09:46:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-08 09:46:59]  is_altstaged=None
[2026-02-08 09:46:59]  is_tar=False
[2026-02-08 09:46:59]  lfn=log.48442031._004632.job.log.tgz.1
[2026-02-08 09:46:59]  mtime=0
[2026-02-08 09:46:59]  protocol_id=None
[2026-02-08 09:46:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 09:46:59]  replicas=None
[2026-02-08 09:46:59]  scope=mc23_13p6TeV
[2026-02-08 09:46:59]  status=None
[2026-02-08 09:46:59]  status_code=0
[2026-02-08 09:46:59]  storage_token=
[2026-02-08 09:46:59]  surl=/tmp/job_11082948/atlas/pilot/slots/0/PanDA_Pilot-7000878542/log.48442031._004632.job.log.tgz.1
[2026-02-08 09:46:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/4c/log.48442031._004632.job.log.tgz.1
[2026-02-08 09:46:59]  workdir=None
[2026-02-08 09:46:59] ]
[2026-02-08 09:46:59] 2026-02-08 08:46:11,635 | INFO     | transferring file log.48442031._004632.job.log.tgz.1 from /tmp/job_11082948/atlas/pilot/slots/0/PanDA_Pilot-7000878542/log.48442031._004632.job.log.tgz.1 to /tmp/j
[2026-02-08 09:46:59] 2026-02-08 08:46:11,635 | INFO     | executing command: /usr/bin/env mv /tmp/job_11082948/atlas/pilot/slots/0/PanDA_Pilot-7000878542/log.48442031._004632.job.log.tgz.1 /tmp/job_11082948/atlas/pilot/sl
[2026-02-08 09:46:59] 2026-02-08 08:46:11,643 | INFO     | adding to output.list: log.48442031._004632.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/4c/log.48442031._004632.job.log.tg
[2026-02-08 09:46:59] 2026-02-08 08:46:11,644 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 09:46:59] 2026-02-08 08:46:11,644 | INFO     | summary of transferred files:
[2026-02-08 09:46:59] 2026-02-08 08:46:11,644 | INFO     |  -- lfn=log.48442031._004632.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 09:46:59] 2026-02-08 08:46:11,644 | INFO     | stage-out finished correctly
[2026-02-08 09:46:59] 2026-02-08 08:46:12,424 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 09:46:59] 2026-02-08 08:46:12,564 | WARNING  | process 31946 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 09:46:59] 2026-02-08 08:46:12,565 | INFO     | using path: /tmp/job_11082948/atlas/pilot/slots/0/PanDA_Pilot-7000878542/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:46:59] 2026-02-08 08:46:12,656 | INFO     | number of running child processes to parent process 31946: 1
[2026-02-08 09:46:59] 2026-02-08 08:46:12,657 | INFO     | maximum number of monitored processes: 6
[2026-02-08 09:46:59] 2026-02-08 08:46:12,947 | INFO     | time since job start (2783s) is within the limit (349056.0s)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,011 | INFO     | job 7000878542 has state=finished
[2026-02-08 09:46:59] 2026-02-08 08:46:14,011 | INFO     | preparing for final server update for job 7000878542 in state='finished'
[2026-02-08 09:46:59] 2026-02-08 08:46:14,011 | INFO     | reading metadata from: /tmp/job_11082948/atlas/pilot/slots/0/PanDA_Pilot-7000878542/jobReport.json
[2026-02-08 09:46:59] 2026-02-08 08:46:14,012 | INFO     | added worker_node to metadata from /tmp/job_11082948/atlas/pilot/slots/0/workernode_map.json
[2026-02-08 09:46:59] 2026-02-08 08:46:14,012 | INFO     | this job has now completed (state=finished)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,012 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,012 | INFO     | log transfer has been attempted: DONE
[2026-02-08 09:46:59] 2026-02-08 08:46:14,012 | INFO     | job 7000878542 has finished - writing final server update
[2026-02-08 09:46:59] 2026-02-08 08:46:14,012 | INFO     | total number of processed events: 400 (read)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,030 | INFO     | using path: /tmp/job_11082948/atlas/pilot/slots/0/PanDA_Pilot-7000878542/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,030 | INFO     | extracted standard info from prmon json
[2026-02-08 09:46:59] 2026-02-08 08:46:14,030 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 09:46:59] 2026-02-08 08:46:14,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | INFO     | fitting pss+swap vs Time
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | INFO     | sum of square deviations: 18381740.0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | INFO     | sum of deviations: -2651661948.0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | INFO     | mean x: 1770539069.0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | INFO     | mean y: 2605497.512820513
[2026-02-08 09:46:59] 2026-02-08 08:46:14,031 | INFO     | intersect: 255412108445.25586
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | chi2: 0.036949879323738
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | current memory leak: -144.26 B/s (using 39 data points, chi2=0.04)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | could have reported an average CPU frequency of 2380 MHz (5 samples)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | ..............................
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . Timing measurements:
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . get job = 0 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . initial setup = 2 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . payload setup = 2 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . stage-in = 0 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . payload execution = 2763 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . stage-out = 0 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | . log creation = 0 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,032 | INFO     | ..............................
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | 
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | job summary report
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | --------------------------------------------------
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | PanDA job id: 7000878542
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | task id: 48442031
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | errors: (none)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | pilot state: finished 
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | transexitcode: 0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | exeerrorcode: 0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,078 | INFO     | exeerrordiag: 
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | exitcode: 0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | exitmsg: OK
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | cpuconsumptiontime: 19578 s
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | nevents: 400
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | neventsw: 0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | pid: 31946
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | pgrp: 31946
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | corecount: 8
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | event service: False
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | sizes: {0: 2283171, 11: 2283171, 2770: 2308633, 2771: 2317661, 2772: 2317717, 2774: 2317943}
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | --------------------------------------------------
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | 
[2026-02-08 09:46:59] 2026-02-08 08:46:14,079 | INFO     | executing command: ls -lF /tmp/job_11082948/atlas/pilot/slots/0
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | job 7000878542 has completed (purged errors)
[2026-02-08 09:46:59] 2026-02-08 08:46:14,090 | INFO     | overall cleanup function is called
[2026-02-08 09:46:59] 2026-02-08 08:46:15,095 | INFO     | --- collectZombieJob: --- 10, [31946]
[2026-02-08 09:46:59] 2026-02-08 08:46:15,095 | INFO     | zombie collector waiting for pid 31946
[2026-02-08 09:46:59] 2026-02-08 08:46:15,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 09:46:59] 2026-02-08 08:46:15,095 | INFO     | collected zombie processes
[2026-02-08 09:46:59] 2026-02-08 08:46:15,095 | INFO     | will attempt to kill all subprocesses of pid=31946
[2026-02-08 09:46:59] 2026-02-08 08:46:15,191 | INFO     | process IDs to be killed: [31946] (in reverse order)
[2026-02-08 09:46:59] 2026-02-08 08:46:15,227 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 09:46:59] 2026-02-08 08:46:15,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 09:46:59] 2026-02-08 08:46:15,230 | INFO     | did not find any defunct processes belonging to 31946
[2026-02-08 09:46:59] 2026-02-08 08:46:15,233 | INFO     | did not find any defunct processes belonging to 31946
[2026-02-08 09:46:59] 2026-02-08 08:46:15,233 | INFO     | ready for new job
[2026-02-08 09:46:59] 2026-02-08 08:46:15,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 09:46:59] 2026-02-08 08:46:15,234 | INFO     | **************************************
[2026-02-08 09:46:59] 2026-02-08 08:46:15,234 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 09:46:59] 2026-02-08 08:46:15,234 | INFO     | **************************************
[2026-02-08 09:46:59] 2026-02-08 08:46:15,234 | INFO     | 
[2026-02-08 09:46:59] 2026-02-08 08:46:15,249 | INFO     | architecture information:
[2026-02-08 09:46:59] 2026-02-08 08:46:15,249 | INFO     | executing command: cat /etc/os-release
[2026-02-08 09:46:59] 2026-02-08 08:46:15,255 | INFO     | cat /etc/os-release:
[2026-02-08 09:46:59] NAME="CentOS Linux"
[2026-02-08 09:46:59] VERSION="7 (Core)"
[2026-02-08 09:46:59] ID="centos"
[2026-02-08 09:46:59] ID_LIKE="rhel fedora"
[2026-02-08 09:46:59] VERSION_ID="7"
[2026-02-08 09:46:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 09:46:59] ANSI_COLOR="0;31"
[2026-02-08 09:46:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 09:46:59] HOME_URL="https://www.centos.org/"
[2026-02-08 09:46:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 09:46:59] 
[2026-02-08 09:46:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 09:46:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 09:46:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 09:46:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 09:46:59] 
[2026-02-08 09:46:59] 2026-02-08 08:46:15,255 | INFO     | **************************************
[2026-02-08 09:46:59] 2026-02-08 08:46:15,758 | INFO     | executing command: df -mP /tmp/job_11082948/atlas/pilot/slots/0
[2026-02-08 09:46:59] 2026-02-08 08:46:15,763 | INFO     | sufficient remaining disk space (224374292480 B)
[2026-02-08 09:46:59] 2026-02-08 08:46:15,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 09:46:59] 2026-02-08 08:46:15,763 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 09:46:59] 2026-02-08 08:46:15,764 | INFO     | update_server=False
[2026-02-08 09:46:59] 2026-02-08 08:46:15,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 09:46:59] 2026-02-08 08:46:15,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:46:59] 2026-02-08 08:46:15,780 | INFO     | all data control threads have been joined
[2026-02-08 09:46:59] 2026-02-08 08:46:16,164 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:46:59] 2026-02-08 08:46:16,165 | INFO     | aborting loop
[2026-02-08 09:46:59] 2026-02-08 08:46:16,200 | INFO     | all job control threads have been joined
[2026-02-08 09:46:59] 2026-02-08 08:46:16,394 | INFO     | all payload control threads have been joined
[2026-02-08 09:46:59] 2026-02-08 08:46:16,769 | INFO     | [job] retrieve thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:16,769 | INFO     | [job] queue monitor thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:16,786 | INFO     | [data] control thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:16,862 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,114 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,170 | INFO     | [job] job monitor thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,201 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 09:46:59] 2026-02-08 08:46:17,205 | INFO     | [job] control thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,311 | INFO     | [payload] validate_post thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,399 | INFO     | [payload] control thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,687 | INFO     | [data] copytool_in thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,822 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,910 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:17,976 | INFO     | [job] validate thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:18,145 | INFO     | [payload] failed_post thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:18,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 09:46:59] 2026-02-08 08:46:19,207 | INFO     | [data] copytool_out thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:22,479 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 09:46:59] 2026-02-08 08:46:46,132 | INFO     | PID=26134 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-08 09:46:59] 2026-02-08 08:46:46,132 | INFO     | .. there are 3 such processes running
[2026-02-08 09:46:59] 2026-02-08 08:46:46,133 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 09:46:59] 2026-02-08 08:46:46,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 09:46:59] 2026-02-08 08:46:46,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 09:46:59] 2026-02-08 08:46:53,008 | INFO     | [monitor] cgroup control has ended
[2026-02-08 09:46:59] 2026-02-08 08:46:54,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-08 09:46:59] 2026-02-08 08:46:54,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 09:46:59] 2026-02-08 08:46:54,173 | INFO     | [monitor] control thread has ended
[2026-02-08 09:46:59] 2026-02-08 08:46:59,063 | INFO     | all workflow threads have been joined
[2026-02-08 09:46:59] 2026-02-08 08:46:59,063 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 09:46:59] 2026-02-08 08:46:59,064 | INFO     | traces error code: 0
[2026-02-08 09:46:59] 2026-02-08 08:46:59,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 09:46:59] 2026-02-08 08:46:59,119 [wrapper] ==== pilot stdout END ====
[2026-02-08 09:46:59] 2026-02-08 08:46:59,121 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 09:46:59] 2026-02-08 08:46:59,122 [wrapper] pilotpid: 26134
[2026-02-08 09:46:59] 2026-02-08 08:46:59,123 [wrapper] Pilot exit status: 0
[2026-02-08 09:46:59] 2026-02-08 08:46:59,128 [wrapper] pandaids: 7000878542
[2026-02-08 09:46:59] 2026-02-08 08:46:59,151 [wrapper] cleanup supervisor_pilot 14443 26135
[2026-02-08 09:46:59] 2026-02-08 08:46:59,153 [wrapper] Test setup, not cleaning
[2026-02-08 09:46:59] 2026-02-08 08:46:59,154 [wrapper] apfmon messages muted
[2026-02-08 09:46:59] 2026-02-08 08:46:59,155 [wrapper] ==== wrapper stdout END ====
[2026-02-08 09:46:59] 2026-02-08 08:46:59,156 [wrapper] ==== wrapper stderr END ====
[2026-02-08 09:46:59]  *** Error codes and diagnostics ***
[2026-02-08 09:46:59]     "exeErrorCode": 0,
[2026-02-08 09:46:59]     "exeErrorDiag": "",
[2026-02-08 09:46:59]     "pilotErrorCode": 0,
[2026-02-08 09:46:59]     "pilotErrorDiag": "",
[2026-02-08 09:46:59]  *** Listing of results directory ***
[2026-02-08 09:46:59] total 666104
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user    584627 Feb  7 21:44 pilot3.tar.gz
[2026-02-08 09:46:59] -rwx------ 1 mf493845 unix-user     36322 Feb  7 21:45 runpilot2-wrapper.sh
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      5111 Feb  7 21:47 queuedata.json
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user       100 Feb  8 06:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 09:46:59] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  8 06:54 run_atlas
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user       105 Feb  8 06:54 job.xml
[2026-02-08 09:46:59] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 08:59 start_atlas.sh
[2026-02-08 09:46:59] drwxrwx--x 2 mf493845 unix-user       100 Feb  8 08:59 shared
[2026-02-08 09:46:59] -rw-r--r-- 2 mf493845 unix-user    597954 Feb  8 08:59 input.tar.gz
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      6390 Feb  8 08:59 init_data.xml
[2026-02-08 09:46:59] -rw-r--r-- 2 mf493845 unix-user 493538437 Feb  8 08:59 EVNT.48442027._000092.pool.root.1
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user         0 Feb  8 08:59 boinc_setup_complete
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      8192 Feb  8 08:59 boinc_mmap_file
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user         0 Feb  8 08:59 boinc_lockfile
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      2529 Feb  8 08:59 pandaJob.out
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user   1009526 Feb  8 08:59 agis_schedconf.cvmfs.json
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user   1513088 Feb  8 08:59 agis_ddmendpoints.agis.ALL.json
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user       420 Feb  8 08:59 workernode_map.json
[2026-02-08 09:46:59] drwx------ 5 mf493845 unix-user       440 Feb  8 08:59 pilot3
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user 183100229 Feb  8 09:45 HITS.48442031._004632.pool.root.1
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      1012 Feb  8 09:46 memory_monitor_summary.json
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user    322628 Feb  8 09:46 log.48442031._004632.job.log.tgz.1
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      6314 Feb  8 09:46 heartbeat.json
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user        95 Feb  8 09:46 pilot_heartbeat.json
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      4831 Feb  8 09:46 pilotlog.txt
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user    442994 Feb  8 09:46 log.48442031._004632.job.log.1
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user       357 Feb  8 09:46 output.list
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user       620 Feb  8 09:46 runtime_log
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user    788480 Feb  8 09:46 result.tar.gz
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user      9219 Feb  8 09:46 runtime_log.err
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user       643 Feb  8 09:46 8yvMDmRM488n9Rq4apOajLDm4fhM0noT9bVooX4SDmkibKDmK16UCo.diag
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user     21827 Feb  8 09:46 stderr.txt
[2026-02-08 09:46:59] HITS file was successfully produced:
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user 183100229 Feb  8 09:45 shared/HITS.pool.root.1
[2026-02-08 09:46:59]  *** Contents of shared directory: ***
[2026-02-08 09:46:59] total 662156
[2026-02-08 09:46:59] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 08:59 start_atlas.sh
[2026-02-08 09:46:59] -rw-r--r-- 2 mf493845 unix-user    597954 Feb  8 08:59 input.tar.gz
[2026-02-08 09:46:59] -rw-r--r-- 2 mf493845 unix-user 493538437 Feb  8 08:59 ATLAS.root_0
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user 183100229 Feb  8 09:45 HITS.pool.root.1
[2026-02-08 09:46:59] -rw------- 1 mf493845 unix-user    788480 Feb  8 09:46 result.tar.gz
09:47:00 (21374): run_atlas exited; CPU time 19612.292808
09:47:00 (21374): called boinc_finish(0)

</stderr_txt>
]]>

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