Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:00 (338882): wrapper (7.7.26015): starting
20:57:00 (338882): wrapper: running run_atlas (--nthreads 2)
[2026-02-08 20:57:00] Arguments: --nthreads 2
[2026-02-08 20:57:00] Threads: 2
[2026-02-08 20:57:00] Checking for CVMFS
[2026-02-08 20:57:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 20:57:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 20:57:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 20:57:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 20:57:01] 2.9.2.0 2935 3451 58400 156031 3 50 30577667 36864000 0 130560 0 976430 99.976 127306 11995 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 20:57:01] CVMFS is ok
[2026-02-08 20:57:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 20:57:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 20:57:01] Further information can be found at the LHC@home message board.
[2026-02-08 20:57:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 20:57:01] Checking for apptainer binary...
[2026-02-08 20:57:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 20:57:01] Running /usr/bin/apptainer --version
[2026-02-08 20:57:01] apptainer version 1.4.1-1.1
[2026-02-08 20:57:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 20:57:01] magicA244
[2026-02-08 20:57:01] apptainer works
[2026-02-08 20:57:01] Set ATHENA_PROC_NUMBER=2
[2026-02-08 20:57:01] Set ATHENA_CORE_NUMBER=2
[2026-02-08 20:57:01] Starting ATLAS job with PandaID=7007172589
[2026-02-08 20:57:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 00:03:02]  *** The last 200 lines of the pilot log: ***
[2026-02-09 00:03:02] 2026-02-08 23:02:31,566 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 00:03:02] 2026-02-08 23:02:31,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 00:03:02] 2026-02-08 23:02:31,566 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 00:03:02] 2026-02-08 23:02:31,567 | INFO     | job 7007172589 has completed (purged errors)
[2026-02-09 00:03:02] 2026-02-08 23:02:31,567 | INFO     | overall cleanup function is called
[2026-02-09 00:03:02] 2026-02-08 23:02:32,573 | INFO     | --- collectZombieJob: --- 10, [347324]
[2026-02-09 00:03:02] 2026-02-08 23:02:32,573 | INFO     | zombie collector waiting for pid 347324
[2026-02-09 00:03:02] 2026-02-08 23:02:32,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 00:03:02] 2026-02-08 23:02:32,574 | INFO     | collected zombie processes
[2026-02-09 00:03:02] 2026-02-08 23:02:32,574 | INFO     | will attempt to kill all subprocesses of pid=347324
[2026-02-09 00:03:02] 2026-02-08 23:02:32,604 | INFO     | process IDs to be killed: [347324] (in reverse order)
[2026-02-09 00:03:02] 2026-02-08 23:02:32,625 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 00:03:02] 2026-02-08 23:02:32,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 00:03:02] 2026-02-08 23:02:32,626 | INFO     | did not find any defunct processes belonging to 347324
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | did not find any defunct processes belonging to 347324
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | ready for new job
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | **************************************
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | **************************************
[2026-02-09 00:03:02] 2026-02-08 23:02:32,627 | INFO     | 
[2026-02-09 00:03:02] 2026-02-08 23:02:32,628 | INFO     | architecture information:
[2026-02-09 00:03:02] 2026-02-08 23:02:32,628 | INFO     | executing command: cat /etc/os-release
[2026-02-09 00:03:02] 2026-02-08 23:02:32,635 | INFO     | cat /etc/os-release:
[2026-02-09 00:03:02] NAME="CentOS Linux"
[2026-02-09 00:03:02] VERSION="7 (Core)"
[2026-02-09 00:03:02] ID="centos"
[2026-02-09 00:03:02] ID_LIKE="rhel fedora"
[2026-02-09 00:03:02] VERSION_ID="7"
[2026-02-09 00:03:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 00:03:02] ANSI_COLOR="0;31"
[2026-02-09 00:03:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 00:03:02] HOME_URL="https://www.centos.org/"
[2026-02-09 00:03:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 00:03:02] 
[2026-02-09 00:03:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 00:03:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 00:03:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 00:03:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 00:03:02] 
[2026-02-09 00:03:02] 2026-02-08 23:02:32,636 | INFO     | **************************************
[2026-02-09 00:03:02] 2026-02-08 23:02:33,138 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 00:03:02] 2026-02-08 23:02:33,159 | INFO     | sufficient remaining disk space (490675896320 B)
[2026-02-09 00:03:02] 2026-02-08 23:02:33,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 00:03:02] 2026-02-08 23:02:33,160 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 00:03:02] 2026-02-08 23:02:33,160 | INFO     | update_server=False
[2026-02-09 00:03:02] 2026-02-08 23:02:33,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 00:03:02] 2026-02-08 23:02:33,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 00:03:02] 2026-02-08 23:02:33,161 | INFO     | aborting loop
[2026-02-09 00:03:02] 2026-02-08 23:02:33,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 00:03:02] 2026-02-08 23:02:33,178 | INFO     | all payload control threads have been joined
[2026-02-09 00:03:02] 2026-02-08 23:02:33,970 | INFO     | all data control threads have been joined
[2026-02-09 00:03:02] 2026-02-08 23:02:34,141 | INFO     | all job control threads have been joined
[2026-02-09 00:03:02] 2026-02-08 23:02:34,166 | INFO     | [job] retrieve thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,167 | INFO     | [job] job monitor thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,168 | INFO     | [job] queue monitor thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,184 | INFO     | [payload] control thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,371 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 00:03:02] 2026-02-08 23:02:34,412 | INFO     | [payload] failed_post thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,770 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,844 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 00:03:02] 2026-02-08 23:02:34,904 | INFO     | [job] validate thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:34,976 | INFO     | [data] control thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:35,112 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:35,147 | INFO     | [job] control thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:35,162 | INFO     | [data] copytool_in thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:35,554 | INFO     | [payload] validate_post thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:36,377 | INFO     | [data] copytool_out thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:37,654 | INFO     | [monitor] cgroup control has ended
[2026-02-09 00:03:02] 2026-02-08 23:02:38,903 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:43,966 | INFO     | job.realtimelogging is not enabled
[2026-02-09 00:03:02] 2026-02-08 23:02:44,971 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 00:03:02] 2026-02-08 23:02:47,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405504005952)>', '<ExcThread(monitor, started 140405014255360)>']
[2026-02-09 00:03:02] 2026-02-08 23:02:52,091 | INFO     | all workflow threads have been joined
[2026-02-09 00:03:02] 2026-02-08 23:02:52,092 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 00:03:02] 2026-02-08 23:02:52,092 | INFO     | traces error code: 0
[2026-02-09 00:03:02] 2026-02-08 23:02:52,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | INFO     | PID=342913 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | CRITICAL | thread 'MainThread' is not alive
[2026-02-09 00:03:02] 2026-02-08 23:03:02,715 | INFO     | [monitor] control thread has ended
[2026-02-09 00:03:02] 2026-02-08 23:03:02,754 [wrapper] ==== pilot stdout END ====
[2026-02-09 00:03:02] 2026-02-08 23:03:02,756 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 00:03:02] 2026-02-08 23:03:02,758 [wrapper] pilotpid: 342913
[2026-02-09 00:03:02] 2026-02-08 23:03:02,760 [wrapper] Pilot exit status: 0
[2026-02-09 00:03:02] 2026-02-08 23:03:02,765 [wrapper] pandaids: 7007172589
[2026-02-09 00:03:02] 2026-02-08 23:03:02,776 [wrapper] cleanup supervisor_pilot  352925 342914
[2026-02-09 00:03:02] 2026-02-08 23:03:02,778 [wrapper] Test setup, not cleaning
[2026-02-09 00:03:02] 2026-02-08 23:03:02,780 [wrapper] apfmon messages muted
[2026-02-09 00:03:02] 2026-02-08 23:03:02,782 [wrapper] ==== wrapper stdout END ====
[2026-02-09 00:03:02] 2026-02-08 23:03:02,784 [wrapper] ==== wrapper stderr END ====
[2026-02-09 00:03:02]  *** Error codes and diagnostics ***
[2026-02-09 00:03:02]     "exeErrorCode": 0,
[2026-02-09 00:03:02]     "exeErrorDiag": "",
[2026-02-09 00:03:02]     "pilotErrorCode": 0,
[2026-02-09 00:03:02]     "pilotErrorDiag": "",
[2026-02-09 00:03:02]  *** Listing of results directory ***
[2026-02-09 00:03:02] total 947728
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc    584627 Feb  8 04:10 pilot3.tar.gz
[2026-02-09 00:03:02] -rwx------ 1 boinc boinc     36322 Feb  8 04:16 runpilot2-wrapper.sh
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc      5111 Feb  8 04:17 queuedata.json
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc       100 Feb  8 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 00:03:02] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 20:57 run_atlas
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc       105 Feb  8 20:57 job.xml
[2026-02-09 00:03:02] -rw-r--r-- 2 boinc boinc 679455216 Feb  8 20:57 EVNT.48431094._000421.pool.root.1
[2026-02-09 00:03:02] drwxrwx--x 2 boinc boinc      4096 Feb  8 20:57 shared
[2026-02-09 00:03:02] -rw-r--r-- 2 boinc boinc    597953 Feb  8 20:57 input.tar.gz
[2026-02-09 00:03:02] -rw-r--r-- 2 boinc boinc     15845 Feb  8 20:57 start_atlas.sh
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc         0 Feb  8 20:57 boinc_setup_complete
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc      6208 Feb  8 20:57 init_data.xml
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc         0 Feb  8 20:57 boinc_lockfile
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc      2553 Feb  8 20:57 pandaJob.out
[2026-02-09 00:03:02] -rw------- 1 boinc boinc   1009496 Feb  8 20:57 agis_schedconf.cvmfs.json
[2026-02-09 00:03:02] -rw------- 1 boinc boinc       428 Feb  8 20:57 workernode_map.json
[2026-02-09 00:03:02] drwx------ 5 boinc boinc      4096 Feb  8 20:57 pilot3
[2026-02-09 00:03:02] -rw------- 1 boinc boinc 283262437 Feb  9 00:02 HITS.48431096._009978.pool.root.1
[2026-02-09 00:03:02] -rw------- 1 boinc boinc        95 Feb  9 00:02 pilot_heartbeat.json
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc       531 Feb  9 00:02 boinc_task_state.xml
[2026-02-09 00:03:02] -rw------- 1 boinc boinc      1028 Feb  9 00:02 memory_monitor_summary.json
[2026-02-09 00:03:02] -rw------- 1 boinc boinc   1513088 Feb  9 00:02 agis_ddmendpoints.agis.ALL.json
[2026-02-09 00:03:02] -rw------- 1 boinc boinc    333953 Feb  9 00:02 log.48431096._009978.job.log.tgz.1
[2026-02-09 00:03:02] -rw------- 1 boinc boinc      6311 Feb  9 00:02 heartbeat.json
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc      8192 Feb  9 00:02 boinc_mmap_file
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc        28 Feb  9 00:02 wrapper_checkpoint.txt
[2026-02-09 00:03:02] -rw------- 1 boinc boinc       816 Feb  9 00:03 pilotlog.txt
[2026-02-09 00:03:02] -rw------- 1 boinc boinc   1580521 Feb  9 00:03 log.48431096._009978.job.log.1
[2026-02-09 00:03:02] -rw------- 1 boinc boinc       357 Feb  9 00:03 output.list
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc       620 Feb  9 00:03 runtime_log
[2026-02-09 00:03:02] -rw------- 1 boinc boinc   1935360 Feb  9 00:03 result.tar.gz
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc      8912 Feb  9 00:03 runtime_log.err
[2026-02-09 00:03:02] -rw------- 1 boinc boinc       662 Feb  9 00:03 XdsNDmbSA98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQrcKDmCkIaim.diag
[2026-02-09 00:03:02] -rw-r--r-- 1 boinc boinc     11283 Feb  9 00:03 stderr.txt
[2026-02-09 00:03:02] HITS file was successfully produced:
[2026-02-09 00:03:02] -rw------- 1 boinc boinc 283262437 Feb  9 00:02 shared/HITS.pool.root.1
[2026-02-09 00:03:02]  *** Contents of shared directory: ***
[2026-02-09 00:03:02] total 942656
[2026-02-09 00:03:02] -rw-r--r-- 2 boinc boinc 679455216 Feb  8 20:57 ATLAS.root_0
[2026-02-09 00:03:02] -rw-r--r-- 2 boinc boinc    597953 Feb  8 20:57 input.tar.gz
[2026-02-09 00:03:02] -rw-r--r-- 2 boinc boinc     15845 Feb  8 20:57 start_atlas.sh
[2026-02-09 00:03:02] -rw------- 1 boinc boinc 283262437 Feb  9 00:02 HITS.pool.root.1
[2026-02-09 00:03:02] -rw------- 1 boinc boinc   1935360 Feb  9 00:03 result.tar.gz
00:03:04 (338882): run_atlas exited; CPU time 21809.889741
00:03:04 (338882): called boinc_finish(0)

</stderr_txt>
]]>

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