Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:13:37 (3697804): wrapper (7.7.26015): starting
20:13:37 (3697804): wrapper: running run_atlas (--nthreads 2)
[2026-02-08 20:13:37] Arguments: --nthreads 2
[2026-02-08 20:13:37] Threads: 2
[2026-02-08 20:13:37] Checking for CVMFS
[2026-02-08 20:13:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 20:13:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 20:13:37] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 20:13:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 20:13:37] 2.9.2.0 3340523 3740 57772 156031 4 1 29101764 36864001 0 130560 0 1063622 99.975 143898 13126 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 20:13:37] CVMFS is ok
[2026-02-08 20:13:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 20:13:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 20:13:37] Further information can be found at the LHC@home message board.
[2026-02-08 20:13:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 20:13:37] Checking for apptainer binary...
[2026-02-08 20:13:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 20:13:37] Running /usr/bin/apptainer --version
[2026-02-08 20:13:37] apptainer version 1.4.1-1.1
[2026-02-08 20:13:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 20:13:38] thA315
[2026-02-08 20:13:38] apptainer works
[2026-02-08 20:13:38] Set ATHENA_PROC_NUMBER=2
[2026-02-08 20:13:38] Set ATHENA_CORE_NUMBER=2
[2026-02-08 20:13:38] Starting ATLAS job with PandaID=7003944673
[2026-02-08 20:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 22:34:16]  *** The last 200 lines of the pilot log: ***
[2026-02-08 22:34:16] 2026-02-08 21:33:21,529 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 22:34:16] 2026-02-08 21:33:21,529 | INFO     | job 7003944673 has completed (purged errors)
[2026-02-08 22:34:16] 2026-02-08 21:33:21,529 | INFO     | overall cleanup function is called
[2026-02-08 22:34:16] 2026-02-08 21:33:22,536 | INFO     | --- collectZombieJob: --- 10, [3706246]
[2026-02-08 22:34:16] 2026-02-08 21:33:22,536 | INFO     | zombie collector waiting for pid 3706246
[2026-02-08 22:34:16] 2026-02-08 21:33:22,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 22:34:16] 2026-02-08 21:33:22,537 | INFO     | collected zombie processes
[2026-02-08 22:34:16] 2026-02-08 21:33:22,537 | INFO     | will attempt to kill all subprocesses of pid=3706246
[2026-02-08 22:34:16] 2026-02-08 21:33:22,569 | INFO     | process IDs to be killed: [3706246] (in reverse order)
[2026-02-08 22:34:16] 2026-02-08 21:33:22,590 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 22:34:16] 2026-02-08 21:33:22,591 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 22:34:16] 2026-02-08 21:33:22,591 | INFO     | did not find any defunct processes belonging to 3706246
[2026-02-08 22:34:16] 2026-02-08 21:33:22,592 | INFO     | did not find any defunct processes belonging to 3706246
[2026-02-08 22:34:16] 2026-02-08 21:33:22,592 | INFO     | ready for new job
[2026-02-08 22:34:16] 2026-02-08 21:33:22,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 22:34:16] 2026-02-08 21:33:22,593 | INFO     | **************************************
[2026-02-08 22:34:16] 2026-02-08 21:33:22,593 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 22:34:16] 2026-02-08 21:33:22,593 | INFO     | **************************************
[2026-02-08 22:34:16] 2026-02-08 21:33:22,593 | INFO     | 
[2026-02-08 22:34:16] 2026-02-08 21:33:22,593 | INFO     | architecture information:
[2026-02-08 22:34:16] 2026-02-08 21:33:22,593 | INFO     | executing command: cat /etc/os-release
[2026-02-08 22:34:16] 2026-02-08 21:33:22,602 | INFO     | cat /etc/os-release:
[2026-02-08 22:34:16] NAME="CentOS Linux"
[2026-02-08 22:34:16] VERSION="7 (Core)"
[2026-02-08 22:34:16] ID="centos"
[2026-02-08 22:34:16] ID_LIKE="rhel fedora"
[2026-02-08 22:34:16] VERSION_ID="7"
[2026-02-08 22:34:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 22:34:16] ANSI_COLOR="0;31"
[2026-02-08 22:34:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 22:34:16] HOME_URL="https://www.centos.org/"
[2026-02-08 22:34:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 22:34:16] 
[2026-02-08 22:34:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 22:34:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 22:34:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 22:34:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 22:34:16] 
[2026-02-08 22:34:16] 2026-02-08 21:33:22,602 | INFO     | **************************************
[2026-02-08 22:34:16] 2026-02-08 21:33:23,106 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | INFO     | sufficient remaining disk space (492799262720 B)
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | INFO     | update_server=False
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 22:34:16] 2026-02-08 21:33:23,118 | INFO     | aborting loop
[2026-02-08 22:34:16] 2026-02-08 21:33:23,385 | INFO     | all data control threads have been joined
[2026-02-08 22:34:16] 2026-02-08 21:33:23,726 | INFO     | all job control threads have been joined
[2026-02-08 22:34:16] 2026-02-08 21:33:23,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 22:34:16] 2026-02-08 21:33:24,124 | INFO     | [job] retrieve thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:24,124 | INFO     | [job] job monitor thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:24,269 | INFO     | all payload control threads have been joined
[2026-02-08 22:34:16] 2026-02-08 21:33:24,345 | INFO     | [data] copytool_in thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:24,391 | INFO     | [data] control thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:24,600 | INFO     | [payload] validate_post thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:24,731 | INFO     | [job] control thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,275 | INFO     | [payload] control thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 22:34:16] 2026-02-08 21:33:25,370 | INFO     | [payload] failed_post thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,497 | INFO     | [job] validate thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,570 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,580 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,604 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:25,895 | INFO     | [data] copytool_out thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:26,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 22:34:16] 2026-02-08 21:33:27,128 | INFO     | [job] queue monitor thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:29,348 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:33,959 | INFO     | job.realtimelogging is not enabled
[2026-02-08 22:34:16] 2026-02-08 21:33:34,965 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 22:34:16] 2026-02-08 21:33:52,933 | INFO     | PID=3701836 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 22:34:16] 2026-02-08 21:33:52,934 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 22:34:16] 2026-02-08 21:33:52,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 22:34:16] 2026-02-08 21:33:52,934 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 22:34:16] 2026-02-08 21:34:10,610 | INFO     | [monitor] cgroup control has ended
[2026-02-08 22:34:16] 2026-02-08 21:34:11,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495425627968)>', '<ExcThread(monitor, started 140494931740416)>']
[2026-02-08 22:34:16] 2026-02-08 21:34:12,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 22:34:16] 2026-02-08 21:34:12,029 | INFO     | [monitor] control thread has ended
[2026-02-08 22:34:16] 2026-02-08 21:34:16,217 | INFO     | all workflow threads have been joined
[2026-02-08 22:34:16] 2026-02-08 21:34:16,217 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 22:34:16] 2026-02-08 21:34:16,218 | INFO     | traces error code: 0
[2026-02-08 22:34:16] 2026-02-08 21:34:16,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 22:34:16] 2026-02-08 21:34:16,261 [wrapper] ==== pilot stdout END ====
[2026-02-08 22:34:16] 2026-02-08 21:34:16,264 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 22:34:16] 2026-02-08 21:34:16,266 [wrapper] pilotpid: 3701836
[2026-02-08 22:34:16] 2026-02-08 21:34:16,267 [wrapper] Pilot exit status: 0
[2026-02-08 22:34:16] 2026-02-08 21:34:16,273 [wrapper] pandaids: 7003944673
[2026-02-08 22:34:16] 2026-02-08 21:34:16,285 [wrapper] cleanup supervisor_pilot 3711233 3701837
[2026-02-08 22:34:16] 2026-02-08 21:34:16,287 [wrapper] Test setup, not cleaning
[2026-02-08 22:34:16] 2026-02-08 21:34:16,289 [wrapper] apfmon messages muted
[2026-02-08 22:34:16] 2026-02-08 21:34:16,291 [wrapper] ==== wrapper stdout END ====
[2026-02-08 22:34:16] 2026-02-08 21:34:16,293 [wrapper] ==== wrapper stderr END ====
[2026-02-08 22:34:16]  *** Error codes and diagnostics ***
[2026-02-08 22:34:16]     "exeErrorCode": 0,
[2026-02-08 22:34:16]     "exeErrorDiag": "",
[2026-02-08 22:34:16]     "pilotErrorCode": 0,
[2026-02-08 22:34:16]     "pilotErrorDiag": "",
[2026-02-08 22:34:16]  *** Listing of results directory ***
[2026-02-08 22:34:16] total 683120
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc    584627 Feb  8 04:10 pilot3.tar.gz
[2026-02-08 22:34:16] -rwx------ 1 boinc boinc     36322 Feb  8 04:16 runpilot2-wrapper.sh
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc      5111 Feb  8 04:17 queuedata.json
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc       100 Feb  8 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 22:34:16] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 20:13 run_atlas
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc       105 Feb  8 20:13 job.xml
[2026-02-08 22:34:16] -rw-r--r-- 2 boinc boinc 499322841 Feb  8 20:13 EVNT.48318016._000058.pool.root.1
[2026-02-08 22:34:16] -rw-r--r-- 2 boinc boinc    597943 Feb  8 20:13 input.tar.gz
[2026-02-08 22:34:16] -rw-r--r-- 2 boinc boinc     15845 Feb  8 20:13 start_atlas.sh
[2026-02-08 22:34:16] drwxrwx--x 2 boinc boinc      4096 Feb  8 20:13 shared
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc         0 Feb  8 20:13 boinc_setup_complete
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc      6206 Feb  8 20:13 init_data.xml
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc         0 Feb  8 20:13 boinc_lockfile
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc      2521 Feb  8 20:13 pandaJob.out
[2026-02-08 22:34:16] -rw------- 1 boinc boinc   1009496 Feb  8 20:13 agis_schedconf.cvmfs.json
[2026-02-08 22:34:16] -rw------- 1 boinc boinc   1513088 Feb  8 20:13 agis_ddmendpoints.agis.ALL.json
[2026-02-08 22:34:16] -rw------- 1 boinc boinc       418 Feb  8 20:13 workernode_map.json
[2026-02-08 22:34:16] drwx------ 5 boinc boinc      4096 Feb  8 20:14 pilot3
[2026-02-08 22:34:16] -rw------- 1 boinc boinc 193249647 Feb  8 22:32 HITS.48318018._002970.pool.root.1
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc       530 Feb  8 22:32 boinc_task_state.xml
[2026-02-08 22:34:16] -rw------- 1 boinc boinc      1015 Feb  8 22:33 memory_monitor_summary.json
[2026-02-08 22:34:16] -rw------- 1 boinc boinc    313859 Feb  8 22:33 log.48318018._002970.job.log.tgz.1
[2026-02-08 22:34:16] -rw------- 1 boinc boinc      6295 Feb  8 22:33 heartbeat.json
[2026-02-08 22:34:16] -rw------- 1 boinc boinc        95 Feb  8 22:33 pilot_heartbeat.json
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc      8192 Feb  8 22:33 boinc_mmap_file
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc        27 Feb  8 22:33 wrapper_checkpoint.txt
[2026-02-08 22:34:16] -rw------- 1 boinc boinc      4820 Feb  8 22:34 pilotlog.txt
[2026-02-08 22:34:16] -rw------- 1 boinc boinc   1195751 Feb  8 22:34 log.48318018._002970.job.log.1
[2026-02-08 22:34:16] -rw------- 1 boinc boinc       357 Feb  8 22:34 output.list
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc       620 Feb  8 22:34 runtime_log
[2026-02-08 22:34:16] -rw------- 1 boinc boinc   1525760 Feb  8 22:34 result.tar.gz
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc      8896 Feb  8 22:34 runtime_log.err
[2026-02-08 22:34:16] -rw------- 1 boinc boinc       657 Feb  8 22:34 HAVKDmmSA98n9Rq4apOajLDm4fhM0noT9bVooX4SDmMLcKDmKmOG3n.diag
[2026-02-08 22:34:16] -rw-r--r-- 1 boinc boinc     10998 Feb  8 22:34 stderr.txt
[2026-02-08 22:34:16] HITS file was successfully produced:
[2026-02-08 22:34:16] -rw------- 1 boinc boinc 193249647 Feb  8 22:32 shared/HITS.pool.root.1
[2026-02-08 22:34:16]  *** Contents of shared directory: ***
[2026-02-08 22:34:16] total 678440
[2026-02-08 22:34:16] -rw-r--r-- 2 boinc boinc 499322841 Feb  8 20:13 ATLAS.root_0
[2026-02-08 22:34:16] -rw-r--r-- 2 boinc boinc    597943 Feb  8 20:13 input.tar.gz
[2026-02-08 22:34:16] -rw-r--r-- 2 boinc boinc     15845 Feb  8 20:13 start_atlas.sh
[2026-02-08 22:34:16] -rw------- 1 boinc boinc 193249647 Feb  8 22:32 HITS.pool.root.1
[2026-02-08 22:34:16] -rw------- 1 boinc boinc   1525760 Feb  8 22:34 result.tar.gz
22:34:17 (3697804): run_atlas exited; CPU time 16307.756465
22:34:17 (3697804): called boinc_finish(0)

</stderr_txt>
]]>

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