Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:56 (3513715): wrapper (7.7.26015): starting
00:02:56 (3513715): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 00:02:56] Arguments: --nthreads 8
[2026-02-08 00:02:56] Threads: 8
[2026-02-08 00:02:56] Checking for CVMFS
[2026-02-08 00:02:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 00:02:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 00:02:57] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 00:02:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 00:02:57] 2.13.3.0 10097 64256 158252 156007 2 287 35950355 39288833 6535 16776704 0 33215314 99.673 43624159 40935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-08 00:02:57] CVMFS is ok
[2026-02-08 00:02:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 00:02:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 00:02:57] Further information can be found at the LHC@home message board.
[2026-02-08 00:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 00:02:57] Checking for apptainer binary...
[2026-02-08 00:02:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 00:02:57] Running /usr/bin/apptainer --version
[2026-02-08 00:02:57] apptainer version 1.4.5-2.el9
[2026-02-08 00:02:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 00:02:57] c-210-15.aglt2.org
[2026-02-08 00:02:57] apptainer works
[2026-02-08 00:02:57] Set ATHENA_PROC_NUMBER=8
[2026-02-08 00:02:57] Set ATHENA_CORE_NUMBER=8
[2026-02-08 00:02:57] Starting ATLAS job with PandaID=7000924576
[2026-02-08 00:02:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 05:42:21]  *** The last 200 lines of the pilot log: ***
[2026-02-08 05:42:21] 2026-02-08 10:41:33,100 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 05:42:21] 2026-02-08 10:41:33,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 05:42:21] 2026-02-08 10:41:33,106 | INFO     | fitting pss+swap vs Time
[2026-02-08 05:42:21] 2026-02-08 10:41:33,107 | INFO     | sum of square deviations: 11345428161.045153
[2026-02-08 05:42:21] 2026-02-08 10:41:33,110 | INFO     | sum of deviations: 132197326884.87659
[2026-02-08 05:42:21] 2026-02-08 10:41:33,111 | INFO     | mean x: 1770537133.689759
[2026-02-08 05:42:21] 2026-02-08 10:41:33,111 | INFO     | mean y: 2478495.5813253014
[2026-02-08 05:42:21] 2026-02-08 10:41:33,111 | INFO     | intersect: -20627882289.554142
[2026-02-08 05:42:21] 2026-02-08 10:41:33,112 | INFO     | chi2: 2.431590575772699
[2026-02-08 05:42:21] 2026-02-08 10:41:33,112 | INFO     | sum of square deviations: 10840532619.272148
[2026-02-08 05:42:21] 2026-02-08 10:41:33,115 | INFO     | sum of deviations: 129484293855.96036
[2026-02-08 05:42:21] 2026-02-08 10:41:33,116 | INFO     | mean x: 1770536981.2048929
[2026-02-08 05:42:21] 2026-02-08 10:41:33,116 | INFO     | mean y: 2477676.149847095
[2026-02-08 05:42:21] 2026-02-08 10:41:33,116 | INFO     | intersect: -21145628123.523674
[2026-02-08 05:42:21] 2026-02-08 10:41:33,116 | INFO     | chi2: 2.431597089556244
[2026-02-08 05:42:21] 2026-02-08 10:41:33,117 | INFO     | current chi2=2.431597089556244 (change=-0.0002678815919872743 %)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,117 | INFO     | right removable region: 326
[2026-02-08 05:42:21] 2026-02-08 10:41:33,117 | INFO     | sum of square deviations: 10840312163.85927
[2026-02-08 05:42:21] 2026-02-08 10:41:33,120 | INFO     | sum of deviations: 53806872531.091805
[2026-02-08 05:42:21] 2026-02-08 10:41:33,121 | INFO     | mean x: 1770537286.207951
[2026-02-08 05:42:21] 2026-02-08 10:41:33,121 | INFO     | mean y: 2502096.7339449544
[2026-02-08 05:42:21] 2026-02-08 10:41:33,121 | INFO     | intersect: -8785720293.03719
[2026-02-08 05:42:21] 2026-02-08 10:41:33,122 | INFO     | chi2: 0.19798677868646217
[2026-02-08 05:42:21] 2026-02-08 10:41:33,122 | INFO     | current chi2=0.19798677868646217 (change=91.85772552916121 %)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,122 | INFO     | sum of square deviations: 10350425824.400667
[2026-02-08 05:42:21] 2026-02-08 10:41:33,125 | INFO     | sum of deviations: 30954087350.6615
[2026-02-08 05:42:21] 2026-02-08 10:41:33,126 | INFO     | mean x: 1770537438.7236025
[2026-02-08 05:42:21] 2026-02-08 10:41:33,126 | INFO     | mean y: 2509190.636645963
[2026-02-08 05:42:21] 2026-02-08 10:41:33,126 | INFO     | intersect: -5292477843.294427
[2026-02-08 05:42:21] 2026-02-08 10:41:33,126 | INFO     | chi2: 0.027343064374766992
[2026-02-08 05:42:21] 2026-02-08 10:41:33,127 | INFO     | current chi2=0.027343064374766992 (change=86.18944933789327 %)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,127 | INFO     | sum of square deviations: 9875516631.77918
[2026-02-08 05:42:21] 2026-02-08 10:41:33,130 | INFO     | sum of deviations: 23929565740.189266
[2026-02-08 05:42:21] 2026-02-08 10:41:33,130 | INFO     | mean x: 1770537591.2397475
[2026-02-08 05:42:21] 2026-02-08 10:41:33,130 | INFO     | mean y: 2511432.365930599
[2026-02-08 05:42:21] 2026-02-08 10:41:33,131 | INFO     | intersect: -4287714311.238007
[2026-02-08 05:42:21] 2026-02-08 10:41:33,131 | INFO     | chi2: 0.002314445368110193
[2026-02-08 05:42:21] 2026-02-08 10:41:33,131 | INFO     | current chi2=0.002314445368110193 (change=91.53553041316746 %)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,132 | INFO     | sum of square deviations: 9415448099.971107
[2026-02-08 05:42:21] 2026-02-08 10:41:33,135 | INFO     | sum of deviations: 21634465522.375053
[2026-02-08 05:42:21] 2026-02-08 10:41:33,135 | INFO     | mean x: 1770537743.7403846
[2026-02-08 05:42:21] 2026-02-08 10:41:33,135 | INFO     | mean y: 2512193.375
[2026-02-08 05:42:21] 2026-02-08 10:41:33,135 | INFO     | intersect: -4065763407.1386504
[2026-02-08 05:42:21] 2026-02-08 10:41:33,136 | INFO     | chi2: 0.0017900724241540684
[2026-02-08 05:42:21] 2026-02-08 10:41:33,136 | INFO     | current chi2=0.0017900724241540684 (change=22.65652718276471 %)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,136 | INFO     | left removable region: 40
[2026-02-08 05:42:21] 2026-02-08 10:41:33,137 | INFO     | sum of square deviations: 7251820547.122331
[2026-02-08 05:42:21] 2026-02-08 10:41:33,139 | INFO     | sum of deviations: 15159764261.590912
[2026-02-08 05:42:21] 2026-02-08 10:41:33,139 | INFO     | mean x: 1770538170.7797203
[2026-02-08 05:42:21] 2026-02-08 10:41:33,139 | INFO     | mean y: 2513776.1363636362
[2026-02-08 05:42:21] 2026-02-08 10:41:33,140 | INFO     | intersect: -3698755596.25868
[2026-02-08 05:42:21] 2026-02-08 10:41:33,140 | INFO     | chi2: 0.001155582054302494
[2026-02-08 05:42:21] 2026-02-08 10:41:33,140 | INFO     | current memory leak: 2.09 B/s (using 286 data points, chi2=0.00)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,141 | INFO     | could have reported an average CPU frequency of 2600 MHz (15 samples)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,141 | INFO     | ..............................
[2026-02-08 05:42:21] 2026-02-08 10:41:33,141 | INFO     | . Timing measurements:
[2026-02-08 05:42:21] 2026-02-08 10:41:33,141 | INFO     | . get job = 0 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | . initial setup = 15 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | . payload setup = 10 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | . stage-in = 0 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | . payload execution = 20258 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | . stage-out = 3 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | . log creation = 0 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,142 | INFO     | ..............................
[2026-02-08 05:42:21] 2026-02-08 10:41:33,343 | INFO     | 
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | job summary report
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | --------------------------------------------------
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | PanDA job id: 7000924576
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | task id: 48310749
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | errors: (none)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | pilot state: finished 
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | transexitcode: 0
[2026-02-08 05:42:21] 2026-02-08 10:41:33,344 | INFO     | exeerrorcode: 0
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | exeerrordiag: 
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | exitcode: 0
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | exitmsg: OK
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | cpuconsumptiontime: 45169 s
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | nevents: 400
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | neventsw: 0
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | pid: 3523578
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | pgrp: 3523578
[2026-02-08 05:42:21] 2026-02-08 10:41:33,345 | INFO     | corecount: 8
[2026-02-08 05:42:21] 2026-02-08 10:41:33,346 | INFO     | event service: False
[2026-02-08 05:42:21] 2026-02-08 10:41:33,346 | INFO     | sizes: {0: 2282606, 1: 2283067, 2: 2283067, 20272: 2316424, 20276: 2325478, 20277: 2325616}
[2026-02-08 05:42:21] 2026-02-08 10:41:33,346 | INFO     | --------------------------------------------------
[2026-02-08 05:42:21] 2026-02-08 10:41:33,346 | INFO     | 
[2026-02-08 05:42:21] 2026-02-08 10:41:33,346 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-02-08 05:42:21] 2026-02-08 10:41:33,398 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,399 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,399 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,399 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,399 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,399 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | job 7000924576 has completed (purged errors)
[2026-02-08 05:42:21] 2026-02-08 10:41:33,401 | INFO     | overall cleanup function is called
[2026-02-08 05:42:21] 2026-02-08 10:41:34,415 | INFO     | --- collectZombieJob: --- 10, [3523578]
[2026-02-08 05:42:21] 2026-02-08 10:41:34,415 | INFO     | zombie collector waiting for pid 3523578
[2026-02-08 05:42:21] 2026-02-08 10:41:34,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 05:42:21] 2026-02-08 10:41:34,416 | INFO     | collected zombie processes
[2026-02-08 05:42:21] 2026-02-08 10:41:34,416 | INFO     | will attempt to kill all subprocesses of pid=3523578
[2026-02-08 05:42:21] 2026-02-08 10:41:34,766 | INFO     | process IDs to be killed: [3523578] (in reverse order)
[2026-02-08 05:42:21] 2026-02-08 10:41:34,842 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 05:42:21] 2026-02-08 10:41:34,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 05:42:21] 2026-02-08 10:41:34,851 | INFO     | did not find any defunct processes belonging to 3523578
[2026-02-08 05:42:21] 2026-02-08 10:41:34,859 | INFO     | did not find any defunct processes belonging to 3523578
[2026-02-08 05:42:21] 2026-02-08 10:41:34,859 | INFO     | ready for new job
[2026-02-08 05:42:21] 2026-02-08 10:41:34,859 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 05:42:21] 2026-02-08 10:41:34,862 | INFO     | **************************************
[2026-02-08 05:42:21] 2026-02-08 10:41:34,862 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 05:42:21] 2026-02-08 10:41:34,863 | INFO     | **************************************
[2026-02-08 05:42:21] 2026-02-08 10:41:34,863 | INFO     | 
[2026-02-08 05:42:21] 2026-02-08 10:41:34,865 | INFO     | architecture information:
[2026-02-08 05:42:21] 2026-02-08 10:41:34,865 | INFO     | executing command: cat /etc/os-release
[2026-02-08 05:42:21] 2026-02-08 10:41:34,883 | INFO     | cat /etc/os-release:
[2026-02-08 05:42:21] NAME="CentOS Linux"
[2026-02-08 05:42:21] VERSION="7 (Core)"
[2026-02-08 05:42:21] ID="centos"
[2026-02-08 05:42:21] ID_LIKE="rhel fedora"
[2026-02-08 05:42:21] VERSION_ID="7"
[2026-02-08 05:42:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 05:42:21] ANSI_COLOR="0;31"
[2026-02-08 05:42:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 05:42:21] HOME_URL="https://www.centos.org/"
[2026-02-08 05:42:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 05:42:21] 
[2026-02-08 05:42:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 05:42:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 05:42:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 05:42:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 05:42:21] 
[2026-02-08 05:42:21] 2026-02-08 10:41:34,883 | INFO     | **************************************
[2026-02-08 05:42:21] 2026-02-08 10:41:35,387 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-02-08 05:42:21] 2026-02-08 10:41:35,435 | INFO     | sufficient remaining disk space (49820991488 B)
[2026-02-08 05:42:21] 2026-02-08 10:41:35,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 05:42:21] 2026-02-08 10:41:35,435 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 05:42:21] 2026-02-08 10:41:35,435 | INFO     | update_server=False
[2026-02-08 05:42:21] 2026-02-08 10:41:35,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 05:42:21] 2026-02-08 10:41:35,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 05:42:21] 2026-02-08 10:41:35,613 | INFO     | all data control threads have been joined
[2026-02-08 05:42:21] 2026-02-08 10:41:36,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 05:42:21] 2026-02-08 10:41:36,006 | INFO     | aborting loop
[2026-02-08 05:42:21] 2026-02-08 10:41:36,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 05:42:21] 2026-02-08 10:41:36,442 | INFO     | [job] retrieve thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,489 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,511 | INFO     | all job control threads have been joined
[2026-02-08 05:42:21] 2026-02-08 10:41:36,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,619 | INFO     | [data] control thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,737 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,755 | INFO     | [data] copytool_in thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,795 | INFO     | [payload] validate_post thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:36,838 | INFO     | all payload control threads have been joined
[2026-02-08 05:42:21] 2026-02-08 10:41:36,889 | INFO     | [job] validate thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:37,011 | INFO     | [job] job monitor thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:37,447 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:37,517 | INFO     | [job] control thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:37,804 | INFO     | [payload] failed_post thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:37,844 | INFO     | [payload] control thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:38,024 | INFO     | [data] copytool_out thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:38,263 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 05:42:21] 2026-02-08 10:41:39,269 | INFO     | [job] queue monitor thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:41:39,446 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 05:42:21] 2026-02-08 10:42:04,100 | INFO     | 20295s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-08 05:42:21] 2026-02-08 10:42:05,550 | INFO     | PID=3518707 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 05:42:21] 2026-02-08 10:42:05,551 | INFO     | .. there are 8 such processes running
[2026-02-08 05:42:21] 2026-02-08 10:42:05,552 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 05:42:21] 2026-02-08 10:42:05,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 05:42:21] 2026-02-08 10:42:05,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 05:42:21] 2026-02-08 10:42:13,461 | INFO     | [monitor] cgroup control has ended
[2026-02-08 05:42:21] 2026-02-08 10:42:15,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187997595456)>', '<ExcThread(monitor, started 140187464103680)>']
[2026-02-08 05:42:21] 2026-02-08 10:42:15,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 05:42:21] 2026-02-08 10:42:15,634 | INFO     | [monitor] control thread has ended
[2026-02-08 05:42:21] 2026-02-08 10:42:20,522 | INFO     | all workflow threads have been joined
[2026-02-08 05:42:21] 2026-02-08 10:42:20,523 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 05:42:21] 2026-02-08 10:42:20,523 | INFO     | traces error code: 0
[2026-02-08 05:42:21] 2026-02-08 10:42:20,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 05:42:21] 2026-02-08 10:42:20,853 [wrapper] ==== pilot stdout END ====
[2026-02-08 05:42:21] 2026-02-08 10:42:20,857 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 05:42:21] 2026-02-08 10:42:20,860 [wrapper] pilotpid: 3518707
[2026-02-08 05:42:21] 2026-02-08 10:42:20,863 [wrapper] Pilot exit status: 0
[2026-02-08 05:42:21] 2026-02-08 10:42:20,880 [wrapper] pandaids: 7000924576
[2026-02-08 05:42:21] 2026-02-08 10:42:20,977 [wrapper] cleanup supervisor_pilot 4080933 3518708
[2026-02-08 05:42:21] 2026-02-08 10:42:20,981 [wrapper] Test setup, not cleaning
[2026-02-08 05:42:21] 2026-02-08 10:42:20,984 [wrapper] apfmon messages muted
[2026-02-08 05:42:21] 2026-02-08 10:42:20,988 [wrapper] ==== wrapper stdout END ====
[2026-02-08 05:42:21] 2026-02-08 10:42:20,991 [wrapper] ==== wrapper stderr END ====
[2026-02-08 05:42:21]  *** Error codes and diagnostics ***
[2026-02-08 05:42:21]     "exeErrorCode": 0,
[2026-02-08 05:42:21]     "exeErrorDiag": "",
[2026-02-08 05:42:21]     "pilotErrorCode": 0,
[2026-02-08 05:42:21]     "pilotErrorDiag": "",
[2026-02-08 05:42:21]  *** Listing of results directory ***
[2026-02-08 05:42:21] total 673672
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas    584627 Feb  7 17:56 pilot3.tar.gz
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas      5111 Feb  7 17:57 queuedata.json
[2026-02-08 05:42:21] -rwx------. 1 boincer umatlas     36322 Feb  7 17:57 runpilot2-wrapper.sh
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas       100 Feb  8 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 05:42:21] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  8 00:02 run_atlas
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas       105 Feb  8 00:02 job.xml
[2026-02-08 05:42:21] -rw-r--r--. 2 boincer umatlas 498126490 Feb  8 00:02 EVNT.48310747._000140.pool.root.1
[2026-02-08 05:42:21] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 00:02 start_atlas.sh
[2026-02-08 05:42:21] drwxrwx--x. 2 boincer umatlas      4096 Feb  8 00:02 shared
[2026-02-08 05:42:21] -rw-r--r--. 2 boincer umatlas    597954 Feb  8 00:02 input.tar.gz
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas         0 Feb  8 00:02 boinc_lockfile
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas      2523 Feb  8 00:02 pandaJob.out
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas        57 Feb  8 00:02 setup.sh.local
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas   1009518 Feb  8 00:03 agis_schedconf.cvmfs.json
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas       434 Feb  8 00:03 workernode_map.json
[2026-02-08 05:42:21] drwx------. 5 boincer umatlas      4096 Feb  8 00:03 pilot3
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas      6660 Feb  8 05:36 init_data.xml
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas 181482517 Feb  8 05:40 HITS.48310749._007443.pool.root.1
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas       531 Feb  8 05:40 boinc_task_state.xml
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas      1042 Feb  8 05:41 memory_monitor_summary.json
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas   1513088 Feb  8 05:41 agis_ddmendpoints.agis.ALL.json
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas    575410 Feb  8 05:41 log.48310749._007443.job.log.tgz.1
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas      6383 Feb  8 05:41 heartbeat.json
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas        95 Feb  8 05:42 pilot_heartbeat.json
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas      8192 Feb  8 05:42 boinc_mmap_file
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas      4935 Feb  8 05:42 pilotlog.txt
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas        28 Feb  8 05:42 wrapper_checkpoint.txt
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas   2566352 Feb  8 05:42 log.48310749._007443.job.log.1
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas       357 Feb  8 05:42 output.list
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas       620 Feb  8 05:42 runtime_log
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas   3164160 Feb  8 05:42 result.tar.gz
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas      9342 Feb  8 05:42 runtime_log.err
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas       658 Feb  8 05:42 7eIKDmeQ688n9Rq4apOajLDm4fhM0noT9bVooX4SDmEvbKDm5leKim.diag
[2026-02-08 05:42:21] -rw-r--r--. 1 boincer umatlas     21022 Feb  8 05:42 stderr.txt
[2026-02-08 05:42:21] HITS file was successfully produced:
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas 181482517 Feb  8 05:40 shared/HITS.pool.root.1
[2026-02-08 05:42:21]  *** Contents of shared directory: ***
[2026-02-08 05:42:21] total 667380
[2026-02-08 05:42:21] -rw-r--r--. 2 boincer umatlas 498126490 Feb  8 00:02 ATLAS.root_0
[2026-02-08 05:42:21] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 00:02 start_atlas.sh
[2026-02-08 05:42:21] -rw-r--r--. 2 boincer umatlas    597954 Feb  8 00:02 input.tar.gz
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas 181482517 Feb  8 05:40 HITS.pool.root.1
[2026-02-08 05:42:21] -rw-------. 1 boincer umatlas   3164160 Feb  8 05:42 result.tar.gz
05:42:22 (3513715): run_atlas exited; CPU time 45708.547980
05:42:22 (3513715): called boinc_finish(0)

</stderr_txt>
]]>

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