Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
08:43:40 (28824): wrapper (7.7.26015): starting
08:43:40 (28824): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 08:43:40] Arguments: --nthreads 8
[2026-02-08 08:43:40] Threads: 8
[2026-02-08 08:43:40] Checking for CVMFS
[2026-02-08 08:43:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 08:43:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 08:43:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 08:43:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 08:43:40] 2.11.0.0 3896 171838 72264 156012 0 11 3340610 4096001 917 130560 2 6746561 99.261 10614160 455 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-08 08:43:40] CVMFS is ok
[2026-02-08 08:43:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 08:43:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 08:43:40] Further information can be found at the LHC@home message board.
[2026-02-08 08:43:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 08:43:40] Checking for apptainer binary...
[2026-02-08 08:43:40] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-08 08:43:40] apptainer is not installed, using version from CVMFS
[2026-02-08 08:43:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 08:43:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_11082925/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node396
[2026-02-08 08:43:41] apptainer works
[2026-02-08 08:43:41] Set ATHENA_PROC_NUMBER=8
[2026-02-08 08:43:41] Set ATHENA_CORE_NUMBER=8
[2026-02-08 08:43:41] Starting ATLAS job with PandaID=6995864066
[2026-02-08 08:43:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11082925/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 09:37:58]  *** The last 200 lines of the pilot log: ***
[2026-02-08 09:37:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-08 09:37:58]  is_altstaged=None
[2026-02-08 09:37:58]  is_tar=False
[2026-02-08 09:37:58]  lfn=log.48318026._003615.job.log.tgz.1
[2026-02-08 09:37:58]  mtime=0
[2026-02-08 09:37:58]  protocol_id=None
[2026-02-08 09:37:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 09:37:58]  replicas=None
[2026-02-08 09:37:58]  scope=mc23_13p6TeV
[2026-02-08 09:37:58]  status=None
[2026-02-08 09:37:58]  status_code=0
[2026-02-08 09:37:58]  storage_token=
[2026-02-08 09:37:58]  surl=/tmp/job_11082925/atlas/pilot/slots/0/PanDA_Pilot-6995864066/log.48318026._003615.job.log.tgz.1
[2026-02-08 09:37:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/15/log.48318026._003615.job.log.tgz.1
[2026-02-08 09:37:58]  workdir=None
[2026-02-08 09:37:58] ]
[2026-02-08 09:37:58] 2026-02-08 08:36:52,525 | INFO     | transferring file log.48318026._003615.job.log.tgz.1 from /tmp/job_11082925/atlas/pilot/slots/0/PanDA_Pilot-6995864066/log.48318026._003615.job.log.tgz.1 to /tmp/j
[2026-02-08 09:37:58] 2026-02-08 08:36:52,525 | INFO     | executing command: /usr/bin/env mv /tmp/job_11082925/atlas/pilot/slots/0/PanDA_Pilot-6995864066/log.48318026._003615.job.log.tgz.1 /tmp/job_11082925/atlas/pilot/sl
[2026-02-08 09:37:58] 2026-02-08 08:36:52,533 | INFO     | adding to output.list: log.48318026._003615.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/15/log.48318026._003615.job.log.tg
[2026-02-08 09:37:58] 2026-02-08 08:36:52,533 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 09:37:58] 2026-02-08 08:36:52,533 | INFO     | summary of transferred files:
[2026-02-08 09:37:58] 2026-02-08 08:36:52,533 | INFO     |  -- lfn=log.48318026._003615.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 09:37:58] 2026-02-08 08:36:52,534 | INFO     | stage-out finished correctly
[2026-02-08 09:37:58] 2026-02-08 08:36:52,824 | INFO     | PID=32568 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-08 09:37:58] 2026-02-08 08:36:52,824 | INFO     | .. there are 3 such processes running
[2026-02-08 09:37:58] 2026-02-08 08:36:53,824 | INFO     | time since job start (3186s) is within the limit (349056.0s)
[2026-02-08 09:37:58] 2026-02-08 08:36:54,091 | INFO     | monitor loop #243: job 0:6995864066 is in state 'finished'
[2026-02-08 09:37:58] 2026-02-08 08:36:54,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 09:37:58] 2026-02-08 08:36:55,344 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 09:37:58] 2026-02-08 08:36:55,829 | INFO     | time since job start (3188s) is within the limit (349056.0s)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,120 | INFO     | job 6995864066 has state=finished
[2026-02-08 09:37:58] 2026-02-08 08:36:56,120 | INFO     | preparing for final server update for job 6995864066 in state='finished'
[2026-02-08 09:37:58] 2026-02-08 08:36:56,120 | INFO     | reading metadata from: /tmp/job_11082925/atlas/pilot/slots/0/PanDA_Pilot-6995864066/jobReport.json
[2026-02-08 09:37:58] 2026-02-08 08:36:56,122 | INFO     | added worker_node to metadata from /tmp/job_11082925/atlas/pilot/slots/0/workernode_map.json
[2026-02-08 09:37:58] 2026-02-08 08:36:56,122 | INFO     | this job has now completed (state=finished)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,122 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,122 | INFO     | log transfer has been attempted: DONE
[2026-02-08 09:37:58] 2026-02-08 08:36:56,122 | INFO     | job 6995864066 has finished - writing final server update
[2026-02-08 09:37:58] 2026-02-08 08:36:56,122 | INFO     | total number of processed events: 400 (read)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,140 | INFO     | using path: /tmp/job_11082925/atlas/pilot/slots/0/PanDA_Pilot-6995864066/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,140 | INFO     | extracted standard info from prmon json
[2026-02-08 09:37:58] 2026-02-08 08:36:56,140 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 09:37:58] 2026-02-08 08:36:56,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 09:37:58] 2026-02-08 08:36:56,140 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 09:37:58] 2026-02-08 08:36:56,141 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 09:37:58] 2026-02-08 08:36:56,141 | INFO     | fitting pss+swap vs Time
[2026-02-08 09:37:58] 2026-02-08 08:36:56,141 | INFO     | sum of square deviations: 28242390.0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,141 | INFO     | sum of deviations: -5960340377.999999
[2026-02-08 09:37:58] 2026-02-08 08:36:56,141 | INFO     | mean x: 1770538290.0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,141 | INFO     | mean y: 2732155.4
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | intersect: 373661295070.2975
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | chi2: 0.02748500394625699
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | current memory leak: -211.04 B/s (using 45 data points, chi2=0.03)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | could have reported an average CPU frequency of 2489 MHz (5 samples)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | ..............................
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . Timing measurements:
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . get job = 0 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . initial setup = 2 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . payload setup = 2 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . stage-in = 0 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . payload execution = 3168 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . stage-out = 0 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | . log creation = 0 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,142 | INFO     | ..............................
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | 
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | job summary report
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | --------------------------------------------------
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | PanDA job id: 6995864066
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | task id: 48318026
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | errors: (none)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | pilot state: finished 
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | transexitcode: 0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,191 | INFO     | exeerrorcode: 0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | exeerrordiag: 
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | exitcode: 0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | exitmsg: OK
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | cpuconsumptiontime: 22275 s
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | nevents: 400
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | neventsw: 0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | pid: 5175
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | pgrp: 5175
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | corecount: 8
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | event service: False
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | sizes: {0: 2283209, 11: 2283209, 3174: 2317805, 3177: 2317805, 3178: 2318031}
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | --------------------------------------------------
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | 
[2026-02-08 09:37:58] 2026-02-08 08:36:56,192 | INFO     | executing command: ls -lF /tmp/job_11082925/atlas/pilot/slots/0
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,202 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | job 6995864066 has completed (purged errors)
[2026-02-08 09:37:58] 2026-02-08 08:36:56,203 | INFO     | overall cleanup function is called
[2026-02-08 09:37:58] 2026-02-08 08:36:57,209 | INFO     | --- collectZombieJob: --- 10, [5175]
[2026-02-08 09:37:58] 2026-02-08 08:36:57,209 | INFO     | zombie collector waiting for pid 5175
[2026-02-08 09:37:58] 2026-02-08 08:36:57,209 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 09:37:58] 2026-02-08 08:36:57,209 | INFO     | collected zombie processes
[2026-02-08 09:37:58] 2026-02-08 08:36:57,209 | INFO     | will attempt to kill all subprocesses of pid=5175
[2026-02-08 09:37:58] 2026-02-08 08:36:57,306 | INFO     | process IDs to be killed: [5175] (in reverse order)
[2026-02-08 09:37:58] 2026-02-08 08:36:57,340 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 09:37:58] 2026-02-08 08:36:57,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 09:37:58] 2026-02-08 08:36:57,344 | INFO     | did not find any defunct processes belonging to 5175
[2026-02-08 09:37:58] 2026-02-08 08:36:57,347 | INFO     | did not find any defunct processes belonging to 5175
[2026-02-08 09:37:58] 2026-02-08 08:36:57,347 | INFO     | ready for new job
[2026-02-08 09:37:58] 2026-02-08 08:36:57,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 09:37:58] 2026-02-08 08:36:57,347 | INFO     | **************************************
[2026-02-08 09:37:58] 2026-02-08 08:36:57,347 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 09:37:58] 2026-02-08 08:36:57,348 | INFO     | **************************************
[2026-02-08 09:37:58] 2026-02-08 08:36:57,348 | INFO     | 
[2026-02-08 09:37:58] 2026-02-08 08:36:57,361 | INFO     | architecture information:
[2026-02-08 09:37:58] 2026-02-08 08:36:57,362 | INFO     | executing command: cat /etc/os-release
[2026-02-08 09:37:58] 2026-02-08 08:36:57,367 | INFO     | cat /etc/os-release:
[2026-02-08 09:37:58] NAME="CentOS Linux"
[2026-02-08 09:37:58] VERSION="7 (Core)"
[2026-02-08 09:37:58] ID="centos"
[2026-02-08 09:37:58] ID_LIKE="rhel fedora"
[2026-02-08 09:37:58] VERSION_ID="7"
[2026-02-08 09:37:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 09:37:58] ANSI_COLOR="0;31"
[2026-02-08 09:37:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 09:37:58] HOME_URL="https://www.centos.org/"
[2026-02-08 09:37:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 09:37:58] 
[2026-02-08 09:37:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 09:37:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 09:37:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 09:37:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 09:37:58] 
[2026-02-08 09:37:58] 2026-02-08 08:36:57,367 | INFO     | **************************************
[2026-02-08 09:37:58] 2026-02-08 08:36:57,870 | INFO     | executing command: df -mP /tmp/job_11082925/atlas/pilot/slots/0
[2026-02-08 09:37:58] 2026-02-08 08:36:57,874 | INFO     | sufficient remaining disk space (223050989568 B)
[2026-02-08 09:37:58] 2026-02-08 08:36:57,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 09:37:58] 2026-02-08 08:36:57,874 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 09:37:58] 2026-02-08 08:36:57,874 | INFO     | update_server=False
[2026-02-08 09:37:58] 2026-02-08 08:36:57,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 09:37:58] 2026-02-08 08:36:57,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 09:37:58] 2026-02-08 08:36:57,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:37:58] 2026-02-08 08:36:57,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:37:58] 2026-02-08 08:36:57,875 | INFO     | aborting loop
[2026-02-08 09:37:58] 2026-02-08 08:36:57,896 | INFO     | all data control threads have been joined
[2026-02-08 09:37:58] 2026-02-08 08:36:58,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 09:37:58] 2026-02-08 08:36:58,198 | INFO     | all job control threads have been joined
[2026-02-08 09:37:58] 2026-02-08 08:36:58,880 | INFO     | [job] retrieve thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:58,880 | INFO     | [job] queue monitor thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:58,880 | INFO     | [job] job monitor thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:58,901 | INFO     | [data] control thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:58,901 | INFO     | all payload control threads have been joined
[2026-02-08 09:37:58] 2026-02-08 08:36:58,905 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:59,204 | INFO     | [job] control thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:59,397 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:59,538 | INFO     | [payload] validate_post thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:59,764 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:59,906 | INFO     | [payload] control thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:36:59,932 | INFO     | [payload] failed_post thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:37:00,049 | INFO     | [job] validate thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:37:00,093 | INFO     | [data] copytool_out thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:37:00,097 | INFO     | [data] copytool_in thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:37:01,880 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:37:08,844 | INFO     | job.realtimelogging is not enabled
[2026-02-08 09:37:58] 2026-02-08 08:37:09,849 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 09:37:58] 2026-02-08 08:37:29,011 | INFO     | PID=32568 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-08 09:37:58] 2026-02-08 08:37:29,011 | INFO     | .. there are 3 such processes running
[2026-02-08 09:37:58] 2026-02-08 08:37:29,011 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 09:37:58] 2026-02-08 08:37:29,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 09:37:58] 2026-02-08 08:37:29,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 09:37:58] 2026-02-08 08:37:52,152 | INFO     | [monitor] cgroup control has ended
[2026-02-08 09:37:58] 2026-02-08 08:37:53,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-08 09:37:58] 2026-02-08 08:37:54,134 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 09:37:58] 2026-02-08 08:37:54,134 | INFO     | [monitor] control thread has ended
[2026-02-08 09:37:58] 2026-02-08 08:37:58,183 | INFO     | all workflow threads have been joined
[2026-02-08 09:37:58] 2026-02-08 08:37:58,183 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 09:37:58] 2026-02-08 08:37:58,183 | INFO     | traces error code: 0
[2026-02-08 09:37:58] 2026-02-08 08:37:58,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 09:37:58] 2026-02-08 08:37:58,242 [wrapper] ==== pilot stdout END ====
[2026-02-08 09:37:58] 2026-02-08 08:37:58,244 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 09:37:58] 2026-02-08 08:37:58,245 [wrapper] pilotpid: 32568
[2026-02-08 09:37:58] 2026-02-08 08:37:58,246 [wrapper] Pilot exit status: 0
[2026-02-08 09:37:58] 2026-02-08 08:37:58,250 [wrapper] pandaids: 6995864066
[2026-02-08 09:37:58] 2026-02-08 08:37:58,272 [wrapper] cleanup supervisor_pilot 12530 32569
[2026-02-08 09:37:58] 2026-02-08 08:37:58,273 [wrapper] Test setup, not cleaning
[2026-02-08 09:37:58] 2026-02-08 08:37:58,274 [wrapper] apfmon messages muted
[2026-02-08 09:37:58] 2026-02-08 08:37:58,275 [wrapper] ==== wrapper stdout END ====
[2026-02-08 09:37:58] 2026-02-08 08:37:58,276 [wrapper] ==== wrapper stderr END ====
[2026-02-08 09:37:58]  *** Error codes and diagnostics ***
[2026-02-08 09:37:58]     "exeErrorCode": 0,
[2026-02-08 09:37:58]     "exeErrorDiag": "",
[2026-02-08 09:37:58]     "pilotErrorCode": 0,
[2026-02-08 09:37:58]     "pilotErrorDiag": "",
[2026-02-08 09:37:58]  *** Listing of results directory ***
[2026-02-08 09:37:58] total 725916
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user    584627 Feb  6 05:58 pilot3.tar.gz
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      5111 Feb  6 06:07 queuedata.json
[2026-02-08 09:37:58] -rwx------ 1 mf493845 unix-user     36322 Feb  6 06:08 runpilot2-wrapper.sh
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user       100 Feb  8 06:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 09:37:58] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  8 06:26 run_atlas
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user       105 Feb  8 06:26 job.xml
[2026-02-08 09:37:58] -rw-r--r-- 2 mf493845 unix-user 538156808 Feb  8 08:43 EVNT.48318024._000073.pool.root.1
[2026-02-08 09:37:58] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 08:43 start_atlas.sh
[2026-02-08 09:37:58] drwxrwx--x 2 mf493845 unix-user       100 Feb  8 08:43 shared
[2026-02-08 09:37:58] -rw-r--r-- 2 mf493845 unix-user    597965 Feb  8 08:43 input.tar.gz
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      6389 Feb  8 08:43 init_data.xml
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user         0 Feb  8 08:43 boinc_setup_complete
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      8192 Feb  8 08:43 boinc_mmap_file
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user         0 Feb  8 08:43 boinc_lockfile
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      2526 Feb  8 08:43 pandaJob.out
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user   1009526 Feb  8 08:43 agis_schedconf.cvmfs.json
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user   1513088 Feb  8 08:43 agis_ddmendpoints.agis.ALL.json
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user       420 Feb  8 08:43 workernode_map.json
[2026-02-08 09:37:58] drwx------ 5 mf493845 unix-user       440 Feb  8 08:43 pilot3
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user 199664258 Feb  8 09:36 HITS.48318026._003615.pool.root.1
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      1016 Feb  8 09:36 memory_monitor_summary.json
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user    299073 Feb  8 09:36 log.48318026._003615.job.log.tgz.1
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      6317 Feb  8 09:36 heartbeat.json
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user        95 Feb  8 09:37 pilot_heartbeat.json
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      4903 Feb  8 09:37 pilotlog.txt
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user    500815 Feb  8 09:37 log.48318026._003615.job.log.1
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user       357 Feb  8 09:37 output.list
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user       620 Feb  8 09:37 runtime_log
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user    819200 Feb  8 09:37 result.tar.gz
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user       644 Feb  8 09:37 zRJODmLGT88n9Rq4apOajLDm4fhM0noT9bVooX4SDmDUXKDmDFEMEn.diag
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user      9219 Feb  8 09:37 runtime_log.err
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user     21962 Feb  8 09:37 stderr.txt
[2026-02-08 09:37:58] HITS file was successfully produced:
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user 199664258 Feb  8 09:36 shared/HITS.pool.root.1
[2026-02-08 09:37:58]  *** Contents of shared directory: ***
[2026-02-08 09:37:58] total 721932
[2026-02-08 09:37:58] -rw-r--r-- 2 mf493845 unix-user 538156808 Feb  8 08:43 ATLAS.root_0
[2026-02-08 09:37:58] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 08:43 start_atlas.sh
[2026-02-08 09:37:58] -rw-r--r-- 2 mf493845 unix-user    597965 Feb  8 08:43 input.tar.gz
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user 199664258 Feb  8 09:36 HITS.pool.root.1
[2026-02-08 09:37:58] -rw------- 1 mf493845 unix-user    819200 Feb  8 09:37 result.tar.gz
09:37:59 (28824): run_atlas exited; CPU time 22313.652576
09:37:59 (28824): called boinc_finish(0)

</stderr_txt>
]]>

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