Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
06:12:51 (3773258): wrapper (7.7.26015): starting
06:12:51 (3773258): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 06:12:51] Arguments: --nthreads 4
[2026-02-08 06:12:51] Threads: 4
[2026-02-08 06:12:51] Checking for CVMFS
[2026-02-08 06:12:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 06:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 06:12:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 06:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 06:12:52] 2.11.3.0 3588909 1405 74076 156018 1 50 2196158 4194304 0 130560 0 411402 99.972 48946 530 http://s1unl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.59.5:3128 1
[2026-02-08 06:12:52] CVMFS is ok
[2026-02-08 06:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 06:12:52] Checking for apptainer binary...
[2026-02-08 06:12:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 06:12:52] Running /usr/bin/apptainer --version
[2026-02-08 06:12:52] apptainer version 1.4.5-2.fc42
[2026-02-08 06:12:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 06:12:53] R7OwensSE
[2026-02-08 06:12:53] apptainer works
[2026-02-08 06:12:53] Set ATHENA_PROC_NUMBER=4
[2026-02-08 06:12:53] Set ATHENA_CORE_NUMBER=4
[2026-02-08 06:12:53] Starting ATLAS job with PandaID=7007143642
[2026-02-08 06:12:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 06:50:24]  *** The last 200 lines of the pilot log: ***
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | could have reported an average CPU frequency of 3283 MHz (5 samples)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | ..............................
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . Timing measurements:
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . get job = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . initial setup = 8 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . payload setup = 7 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . stage-in = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . payload execution = 2037 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . stage-out = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . log creation = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | ..............................
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | executing command: tail -n 20 /data/boinc/slots/7/PanDA_Pilot-7007143642/pilotlog.txt
[2026-02-08 06:50:24] 2026-02-08 12:49:35,692 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-08 06:50:24] - Log from pilotlog.txt -
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | sum of square deviations: 6094998.0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | sum of deviations: -1764910011.0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | mean x: 1770553915.0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | mean y: 2466725.1481481483
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | intersect: 512696372383.31946
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | chi2: 0.05844581445519068
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | current memory leak: -289.57 B/s (using 27 data points, chi2=0.06)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | could have reported an average CPU frequency of 3283 MHz (5 samples)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | ..............................
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . Timing measurements:
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . get job = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . initial setup = 8 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . payload setup = 7 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . stage-in = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . payload execution = 2037 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . stage-out = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . log creation = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | ..............................
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | executing command: tail -n 20 /data/boinc/slots/7/PanDA_Pilot-7007143642/pilotlog.txt
[2026-02-08 06:50:24] 2026-02-08 12:49:35,692 | WARNING  | 
[2026-02-08 06:50:24] [begin log extracts]
[2026-02-08 06:50:24] - Log from pilotlog.txt -
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | sum of square deviations: 6094998.0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | sum of deviations: -1764910011.0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | mean x: 1770553915.0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | mean y: 2466725.1481481483
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | intersect: 512696372383.31946
[2026-02-08 06:50:24] 2026-02-08 12:49:35,670 | INFO     | chi2: 0.05844581445519068
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | current memory leak: -289.57 B/s (using 27 data points, chi2=0.06)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | could have reported an average CPU frequency of 3283 MHz (5 samples)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | ..............................
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . Timing measurements:
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . get job = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . initial setup = 8 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . payload setup = 7 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . stage-in = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . payload execution = 2037 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . stage-out = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,671 | INFO     | . log creation = 0 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | ..............................
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-08 06:50:24] 2026-02-08 12:49:35,672 | INFO     | executing command: tail -n 20 /data/boinc/slots/7/PanDA_Pilot-7007143642/pilotlog.txt
[2026-02-08 06:50:24] [end log extracts]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,692 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,693 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2026-02-08 06:50:24] 2026-02-08 12:49:35,816 | INFO     | time since job start (2181s) is within the limit (349056.0s)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,816 | INFO     | 2189s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-08 06:50:24] 2026-02-08 12:49:35,876 | INFO     | 
[2026-02-08 06:50:24] 2026-02-08 12:49:35,876 | INFO     | job summary report
[2026-02-08 06:50:24] 2026-02-08 12:49:35,876 | INFO     | --------------------------------------------------
[2026-02-08 06:50:24] 2026-02-08 12:49:35,876 | INFO     | PanDA job id: 7007143642
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | task id: 48310589
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-08 12:47:26,273 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "Co
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | pilot error code: 1328
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "C
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | pilot state: failed 
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | transexitcode: 65
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | exeerrorcode: 0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | exeerrordiag: 
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | exitcode: 65
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2026-02-08 06:50:24] 2026-02-08 12:49:35,877 | INFO     | cpuconsumptiontime: 6813 s
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | nevents: 0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | neventsw: 0
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | pid: 3781560
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | pgrp: 3781560
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | corecount: 4
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | event service: False
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | sizes: {0: 2283040, 11: 2283040, 2048: 2310767, 2049: 2315059, 2053: 2315143, 2170: 2315369}
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | --------------------------------------------------
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | 
[2026-02-08 06:50:24] 2026-02-08 12:49:35,878 | INFO     | executing command: ls -lF /data/boinc/slots/7
[2026-02-08 06:50:24] 2026-02-08 12:49:35,911 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,911 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,911 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,911 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,913 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,913 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 06:50:24] 2026-02-08 12:49:35,913 | INFO     | job 7007143642 has completed (purged errors)
[2026-02-08 06:50:24] 2026-02-08 12:49:35,913 | INFO     | overall cleanup function is called
[2026-02-08 06:50:24] 2026-02-08 12:49:36,921 | INFO     | --- collectZombieJob: --- 10, [3781560]
[2026-02-08 06:50:24] 2026-02-08 12:49:36,921 | INFO     | zombie collector waiting for pid 3781560
[2026-02-08 06:50:24] 2026-02-08 12:49:36,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 06:50:24] 2026-02-08 12:49:36,922 | INFO     | collected zombie processes
[2026-02-08 06:50:24] 2026-02-08 12:49:36,922 | INFO     | will attempt to kill all subprocesses of pid=3781560
[2026-02-08 06:50:24] 2026-02-08 12:49:37,029 | INFO     | process IDs to be killed: [3781560] (in reverse order)
[2026-02-08 06:50:24] 2026-02-08 12:49:37,088 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 06:50:24] 2026-02-08 12:49:37,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 06:50:24] 2026-02-08 12:49:37,092 | INFO     | did not find any defunct processes belonging to 3781560
[2026-02-08 06:50:24] 2026-02-08 12:49:37,095 | INFO     | did not find any defunct processes belonging to 3781560
[2026-02-08 06:50:24] 2026-02-08 12:49:37,095 | INFO     | ready for new job
[2026-02-08 06:50:24] 2026-02-08 12:49:37,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 06:50:24] 2026-02-08 12:49:37,096 | INFO     | **************************************
[2026-02-08 06:50:24] 2026-02-08 12:49:37,096 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 06:50:24] 2026-02-08 12:49:37,097 | INFO     | **************************************
[2026-02-08 06:50:24] 2026-02-08 12:49:37,097 | INFO     | 
[2026-02-08 06:50:24] 2026-02-08 12:49:37,097 | INFO     | architecture information:
[2026-02-08 06:50:24] 2026-02-08 12:49:37,098 | INFO     | executing command: cat /etc/os-release
[2026-02-08 06:50:24] 2026-02-08 12:49:37,118 | INFO     | cat /etc/os-release:
[2026-02-08 06:50:24] NAME="CentOS Linux"
[2026-02-08 06:50:24] VERSION="7 (Core)"
[2026-02-08 06:50:24] ID="centos"
[2026-02-08 06:50:24] ID_LIKE="rhel fedora"
[2026-02-08 06:50:24] VERSION_ID="7"
[2026-02-08 06:50:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 06:50:24] ANSI_COLOR="0;31"
[2026-02-08 06:50:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 06:50:24] HOME_URL="https://www.centos.org/"
[2026-02-08 06:50:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 06:50:24] 
[2026-02-08 06:50:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 06:50:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 06:50:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 06:50:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 06:50:24] 
[2026-02-08 06:50:24] 2026-02-08 12:49:37,118 | INFO     | **************************************
[2026-02-08 06:50:24] 2026-02-08 12:49:37,621 | INFO     | executing command: df -mP /data/boinc/slots/7
[2026-02-08 06:50:24] 2026-02-08 12:49:37,641 | INFO     | sufficient remaining disk space (410017333248 B)
[2026-02-08 06:50:24] 2026-02-08 12:49:37,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 06:50:24] 2026-02-08 12:49:37,642 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 06:50:24] 2026-02-08 12:49:37,642 | INFO     | update_server=False
[2026-02-08 06:50:24] 2026-02-08 12:49:37,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 06:50:24] 2026-02-08 12:49:37,643 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 06:50:24] 2026-02-08 12:49:37,643 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 06:50:24] 2026-02-08 12:49:37,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 06:50:24] 2026-02-08 12:49:37,643 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-08 06:50:24] 2026-02-08 12:49:37,643 | INFO     | aborting loop
[2026-02-08 06:50:24] 2026-02-08 12:49:37,644 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 06:50:24] 2026-02-08 12:49:37,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 06:50:24] 2026-02-08 12:49:37,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 06:50:24] 2026-02-08 12:49:37,893 | INFO     | all data control threads have been joined
[2026-02-08 06:50:24] 2026-02-08 12:49:38,262 | INFO     | all job control threads have been joined
[2026-02-08 06:50:24] 2026-02-08 12:49:38,349 | INFO     | all payload control threads have been joined
[2026-02-08 06:50:24] 2026-02-08 12:49:38,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 06:50:24] 2026-02-08 12:49:38,647 | INFO     | [job] retrieve thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:38,648 | INFO     | [job] job monitor thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:38,649 | INFO     | [job] queue monitor thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:38,672 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:38,698 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:38,765 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:38,899 | INFO     | [data] control thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,073 | INFO     | [data] copytool_in thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,223 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,267 | INFO     | [job] control thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,355 | INFO     | [payload] control thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,636 | INFO     | [payload] failed_post thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,759 | INFO     | [payload] validate_post thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:39,980 | INFO     | [job] validate thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:40,428 | INFO     | [data] copytool_out thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:49:41,649 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 06:50:24] 2026-02-08 12:50:17,507 | INFO     | [monitor] cgroup control has ended
[2026-02-08 06:50:24] 2026-02-08 12:50:19,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140277955721024)>', '<ExcThread(monitor, started 140277314479872)>']
[2026-02-08 06:50:24] 2026-02-08 12:50:19,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 06:50:24] 2026-02-08 12:50:19,851 | INFO     | [monitor] control thread has ended
[2026-02-08 06:50:24] 2026-02-08 12:50:24,292 | INFO     | all workflow threads have been joined
[2026-02-08 06:50:24] 2026-02-08 12:50:24,293 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 06:50:24] 2026-02-08 12:50:24,293 | INFO     | traces error code: 0
[2026-02-08 06:50:24] 2026-02-08 12:50:24,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 06:50:24] 2026-02-08 12:50:24,446 [wrapper] ==== pilot stdout END ====
[2026-02-08 06:50:24] 2026-02-08 12:50:24,452 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 06:50:24] 2026-02-08 12:50:24,458 [wrapper] pilotpid: 3777060
[2026-02-08 06:50:24] 2026-02-08 12:50:24,464 [wrapper] Pilot exit status: 0
[2026-02-08 06:50:24] 2026-02-08 12:50:24,482 [wrapper] pandaids: 7007143642
[2026-02-08 06:50:24] 2026-02-08 12:50:24,542 [wrapper] cleanup supervisor_pilot 3787157 3777061
[2026-02-08 06:50:24] 2026-02-08 12:50:24,545 [wrapper] Test setup, not cleaning
[2026-02-08 06:50:24] 2026-02-08 12:50:24,549 [wrapper] apfmon messages muted
[2026-02-08 06:50:24] 2026-02-08 12:50:24,554 [wrapper] ==== wrapper stdout END ====
[2026-02-08 06:50:24] 2026-02-08 12:50:24,558 [wrapper] ==== wrapper stderr END ====
[2026-02-08 06:50:24]  *** Error codes and diagnostics ***
[2026-02-08 06:50:24]     "exeErrorCode": 0,
[2026-02-08 06:50:24]     "exeErrorDiag": "",
[2026-02-08 06:50:24]     "pilotErrorCode": 1305,
[2026-02-08 06:50:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-02-08 06:50:24]  *** Listing of results directory ***
[2026-02-08 06:50:24] total 488748
[2026-02-08 06:50:24] -rwx------ 1 boinc boinc     36322 Feb  7 19:03 runpilot2-wrapper.sh
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc    584627 Feb  7 19:03 pilot3.tar.gz
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc      5111 Feb  7 19:03 queuedata.json
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc       100 Feb  8 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 06:50:24] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 06:12 run_atlas
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc       105 Feb  8 06:12 job.xml
[2026-02-08 06:50:24] -rw-r--r-- 2 boinc boinc 495404340 Feb  8 06:12 EVNT.48310585._000125.pool.root.1
[2026-02-08 06:50:24] -rw-r--r-- 2 boinc boinc    597952 Feb  8 06:12 input.tar.gz
[2026-02-08 06:50:24] -rw-r--r-- 2 boinc boinc     15845 Feb  8 06:12 start_atlas.sh
[2026-02-08 06:50:24] drwxrwx--x 2 boinc boinc      4096 Feb  8 06:12 shared
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc         0 Feb  8 06:12 boinc_setup_complete
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc      9286 Feb  8 06:12 init_data.xml
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc         0 Feb  8 06:12 boinc_lockfile
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc      2528 Feb  8 06:12 pandaJob.out
[2026-02-08 06:50:24] -rw------- 1 boinc boinc   1009518 Feb  8 06:13 agis_schedconf.cvmfs.json
[2026-02-08 06:50:24] -rw------- 1 boinc boinc   1513088 Feb  8 06:13 agis_ddmendpoints.agis.ALL.json
[2026-02-08 06:50:24] -rw------- 1 boinc boinc       420 Feb  8 06:13 workernode_map.json
[2026-02-08 06:50:24] drwx------ 5 boinc boinc      4096 Feb  8 06:13 pilot3
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc       529 Feb  8 06:47 boinc_task_state.xml
[2026-02-08 06:50:24] -rw------- 1 boinc boinc      1014 Feb  8 06:47 memory_monitor_summary.json
[2026-02-08 06:50:24] -rw------- 1 boinc boinc    215651 Feb  8 06:47 log.48310589._011059.job.log.tgz.1
[2026-02-08 06:50:24] -rw------- 1 boinc boinc        95 Feb  8 06:49 pilot_heartbeat.json
[2026-02-08 06:50:24] -rw------- 1 boinc boinc      7923 Feb  8 06:49 heartbeat.json
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc      8192 Feb  8 06:50 boinc_mmap_file
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc        26 Feb  8 06:50 wrapper_checkpoint.txt
[2026-02-08 06:50:24] -rw------- 1 boinc boinc      4546 Feb  8 06:50 pilotlog.txt
[2026-02-08 06:50:24] -rw------- 1 boinc boinc    352106 Feb  8 06:50 log.48310589._011059.job.log.1
[2026-02-08 06:50:24] -rw------- 1 boinc boinc       188 Feb  8 06:50 output.list
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc       620 Feb  8 06:50 runtime_log
[2026-02-08 06:50:24] -rw------- 1 boinc boinc    583680 Feb  8 06:50 result.tar.gz
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc      8577 Feb  8 06:50 runtime_log.err
[2026-02-08 06:50:24] -rw------- 1 boinc boinc       639 Feb  8 06:50 GsfKDmAO888nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmOVcKDm9jfMam.diag
[2026-02-08 06:50:24] -rw-r--r-- 1 boinc boinc     21436 Feb  8 06:50 stderr.txt
[2026-02-08 06:50:24] No HITS result produced
[2026-02-08 06:50:24]  *** Contents of shared directory: ***
[2026-02-08 06:50:24] total 484972
[2026-02-08 06:50:24] -rw-r--r-- 2 boinc boinc 495404340 Feb  8 06:12 ATLAS.root_0
[2026-02-08 06:50:24] -rw-r--r-- 2 boinc boinc    597952 Feb  8 06:12 input.tar.gz
[2026-02-08 06:50:24] -rw-r--r-- 2 boinc boinc     15845 Feb  8 06:12 start_atlas.sh
[2026-02-08 06:50:24] -rw------- 1 boinc boinc    583680 Feb  8 06:50 result.tar.gz
06:50:26 (3773258): run_atlas exited; CPU time 6815.654253
06:50:26 (3773258): called boinc_finish(0)

</stderr_txt>
]]>

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