Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:32:49 (297168): wrapper (7.7.26015): starting
13:32:49 (297168): wrapper: running run_atlas (--nthreads 2)
[2026-02-08 13:32:49] Arguments: --nthreads 2
[2026-02-08 13:32:49] Threads: 2
[2026-02-08 13:32:49] Checking for CVMFS
[2026-02-08 13:32:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 13:32:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 13:32:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 13:32:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 13:32:50] 2.9.2.0 2935 3007 58604 156020 2 49 30524243 36864000 0 130560 0 853382 99.976 110926 11211 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 13:32:50] CVMFS is ok
[2026-02-08 13:32:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 13:32:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 13:32:50] Further information can be found at the LHC@home message board.
[2026-02-08 13:32:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 13:32:50] Checking for apptainer binary...
[2026-02-08 13:32:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 13:32:50] Running /usr/bin/apptainer --version
[2026-02-08 13:32:50] apptainer version 1.4.1-1.1
[2026-02-08 13:32:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 13:32:50] magicA244
[2026-02-08 13:32:50] apptainer works
[2026-02-08 13:32:50] Set ATHENA_PROC_NUMBER=2
[2026-02-08 13:32:50] Set ATHENA_CORE_NUMBER=2
[2026-02-08 13:32:50] Starting ATLAS job with PandaID=7000836287
[2026-02-08 13:32:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 16:26:32]  *** The last 200 lines of the pilot log: ***
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,535 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 16:26:32] 2026-02-08 15:25:27,536 | INFO     | job 7000836287 has completed (purged errors)
[2026-02-08 16:26:32] 2026-02-08 15:25:27,536 | INFO     | overall cleanup function is called
[2026-02-08 16:26:32] 2026-02-08 15:25:28,542 | INFO     | --- collectZombieJob: --- 10, [305609]
[2026-02-08 16:26:32] 2026-02-08 15:25:28,542 | INFO     | zombie collector waiting for pid 305609
[2026-02-08 16:26:32] 2026-02-08 15:25:28,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 16:26:32] 2026-02-08 15:25:28,543 | INFO     | collected zombie processes
[2026-02-08 16:26:32] 2026-02-08 15:25:28,543 | INFO     | will attempt to kill all subprocesses of pid=305609
[2026-02-08 16:26:32] 2026-02-08 15:25:28,572 | INFO     | process IDs to be killed: [305609] (in reverse order)
[2026-02-08 16:26:32] 2026-02-08 15:25:28,592 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 16:26:32] 2026-02-08 15:25:28,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 16:26:32] 2026-02-08 15:25:28,593 | INFO     | did not find any defunct processes belonging to 305609
[2026-02-08 16:26:32] 2026-02-08 15:25:28,593 | INFO     | did not find any defunct processes belonging to 305609
[2026-02-08 16:26:32] 2026-02-08 15:25:28,593 | INFO     | ready for new job
[2026-02-08 16:26:32] 2026-02-08 15:25:28,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 16:26:32] 2026-02-08 15:25:28,594 | INFO     | **************************************
[2026-02-08 16:26:32] 2026-02-08 15:25:28,594 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 16:26:32] 2026-02-08 15:25:28,594 | INFO     | **************************************
[2026-02-08 16:26:32] 2026-02-08 15:25:28,594 | INFO     | 
[2026-02-08 16:26:32] 2026-02-08 15:25:28,594 | INFO     | architecture information:
[2026-02-08 16:26:32] 2026-02-08 15:25:28,594 | INFO     | executing command: cat /etc/os-release
[2026-02-08 16:26:32] 2026-02-08 15:25:28,602 | INFO     | cat /etc/os-release:
[2026-02-08 16:26:32] NAME="CentOS Linux"
[2026-02-08 16:26:32] VERSION="7 (Core)"
[2026-02-08 16:26:32] ID="centos"
[2026-02-08 16:26:32] ID_LIKE="rhel fedora"
[2026-02-08 16:26:32] VERSION_ID="7"
[2026-02-08 16:26:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 16:26:32] ANSI_COLOR="0;31"
[2026-02-08 16:26:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 16:26:32] HOME_URL="https://www.centos.org/"
[2026-02-08 16:26:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 16:26:32] 
[2026-02-08 16:26:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 16:26:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 16:26:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 16:26:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 16:26:32] 
[2026-02-08 16:26:32] 2026-02-08 15:25:28,603 | INFO     | **************************************
[2026-02-08 16:26:32] 2026-02-08 15:25:29,106 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 16:26:32] 2026-02-08 15:25:29,117 | INFO     | sufficient remaining disk space (490774462464 B)
[2026-02-08 16:26:32] 2026-02-08 15:25:29,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 16:26:32] 2026-02-08 15:25:29,117 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 16:26:32] 2026-02-08 15:25:29,118 | INFO     | update_server=False
[2026-02-08 16:26:32] 2026-02-08 15:25:29,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 16:26:32] 2026-02-08 15:25:29,118 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 16:26:32] 2026-02-08 15:25:29,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 16:26:32] 2026-02-08 15:25:29,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 16:26:32] 2026-02-08 15:25:29,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 16:26:32] 2026-02-08 15:25:29,129 | INFO     | aborting loop
[2026-02-08 16:26:32] 2026-02-08 15:25:29,422 | INFO     | all data control threads have been joined
[2026-02-08 16:26:32] 2026-02-08 15:25:29,431 | INFO     | all payload control threads have been joined
[2026-02-08 16:26:32] 2026-02-08 15:25:29,799 | INFO     | all job control threads have been joined
[2026-02-08 16:26:32] 2026-02-08 15:25:30,122 | INFO     | [job] queue monitor thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:30,123 | INFO     | [job] retrieve thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:30,129 | INFO     | [payload] failed_post thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:30,134 | INFO     | [job] job monitor thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:30,428 | INFO     | [data] control thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:30,436 | INFO     | [payload] control thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:30,805 | INFO     | [job] control thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,123 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,124 | INFO     | [data] copytool_out thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,165 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,259 | INFO     | [job] validate thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,371 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,445 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,450 | INFO     | [payload] validate_post thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:31,584 | INFO     | [data] copytool_in thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:25:33,124 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 16:26:32] 2026-02-08 15:26:00,115 | INFO     | PID=301197 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 16:26:32] 2026-02-08 15:26:00,115 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 16:26:32] 2026-02-08 15:26:00,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 16:26:32] 2026-02-08 15:26:00,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 16:26:32] 2026-02-08 15:26:25,105 | INFO     | [monitor] cgroup control has ended
[2026-02-08 16:26:32] 2026-02-08 15:26:26,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140556535465792)>', '<ExcThread(monitor, started 140555665262336)>']
[2026-02-08 16:26:32] 2026-02-08 15:26:27,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 16:26:32] 2026-02-08 15:26:27,254 | INFO     | [monitor] control thread has ended
[2026-02-08 16:26:32] 2026-02-08 15:26:31,903 | INFO     | all workflow threads have been joined
[2026-02-08 16:26:32] 2026-02-08 15:26:31,904 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 16:26:32] 2026-02-08 15:26:31,904 | INFO     | traces error code: 0
[2026-02-08 16:26:32] 2026-02-08 15:26:31,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 16:26:32] 2026-02-08 15:26:31,947 [wrapper] ==== pilot stdout END ====
[2026-02-08 16:26:32] 2026-02-08 15:26:31,949 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 16:26:32] 2026-02-08 15:26:31,951 [wrapper] pilotpid: 301197
[2026-02-08 16:26:32] 2026-02-08 15:26:31,953 [wrapper] Pilot exit status: 0
[2026-02-08 16:26:32] 2026-02-08 15:26:31,958 [wrapper] pandaids: 7000836287
[2026-02-08 16:26:32] 2026-02-08 15:26:31,970 [wrapper] cleanup supervisor_pilot  311101 301198
[2026-02-08 16:26:32] 2026-02-08 15:26:31,972 [wrapper] Test setup, not cleaning
[2026-02-08 16:26:32] 2026-02-08 15:26:31,974 [wrapper] apfmon messages muted
[2026-02-08 16:26:32] 2026-02-08 15:26:31,976 [wrapper] ==== wrapper stdout END ====
[2026-02-08 16:26:32] 2026-02-08 15:26:31,978 [wrapper] ==== wrapper stderr END ====
[2026-02-08 16:26:32]  *** Error codes and diagnostics ***
[2026-02-08 16:26:32]     "exeErrorCode": 0,
[2026-02-08 16:26:32]     "exeErrorDiag": "",
[2026-02-08 16:26:32]     "pilotErrorCode": 0,
[2026-02-08 16:26:32]     "pilotErrorDiag": "",
[2026-02-08 16:26:32]  *** Listing of results directory ***
[2026-02-08 16:26:32] total 893888
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc    584627 Feb  7 19:32 pilot3.tar.gz
[2026-02-08 16:26:32] -rwx------ 1 boinc boinc     36322 Feb  7 19:34 runpilot2-wrapper.sh
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc      5111 Feb  7 19:35 queuedata.json
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc       100 Feb  8 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 16:26:32] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 13:32 run_atlas
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc       105 Feb  8 13:32 job.xml
[2026-02-08 16:26:32] -rw-r--r-- 2 boinc boinc 649296753 Feb  8 13:32 EVNT.48431111._000117.pool.root.1
[2026-02-08 16:26:32] -rw-r--r-- 2 boinc boinc    597956 Feb  8 13:32 input.tar.gz
[2026-02-08 16:26:32] -rw-r--r-- 2 boinc boinc     15845 Feb  8 13:32 start_atlas.sh
[2026-02-08 16:26:32] drwxrwx--x 2 boinc boinc      4096 Feb  8 13:32 shared
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc         0 Feb  8 13:32 boinc_setup_complete
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc      6208 Feb  8 13:32 init_data.xml
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc         0 Feb  8 13:32 boinc_lockfile
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc      2544 Feb  8 13:32 pandaJob.out
[2026-02-08 16:26:32] -rw------- 1 boinc boinc   1009518 Feb  8 13:33 agis_schedconf.cvmfs.json
[2026-02-08 16:26:32] -rw------- 1 boinc boinc   1513088 Feb  8 13:33 agis_ddmendpoints.agis.ALL.json
[2026-02-08 16:26:32] -rw------- 1 boinc boinc       421 Feb  8 13:33 workernode_map.json
[2026-02-08 16:26:32] drwx------ 5 boinc boinc      4096 Feb  8 13:33 pilot3
[2026-02-08 16:26:32] -rw------- 1 boinc boinc 258545937 Feb  8 16:25 HITS.48431113._005894.pool.root.1
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc       531 Feb  8 16:25 boinc_task_state.xml
[2026-02-08 16:26:32] -rw------- 1 boinc boinc      1016 Feb  8 16:25 memory_monitor_summary.json
[2026-02-08 16:26:32] -rw------- 1 boinc boinc    316283 Feb  8 16:25 log.48431113._005894.job.log.tgz.1
[2026-02-08 16:26:32] -rw------- 1 boinc boinc      6306 Feb  8 16:25 heartbeat.json
[2026-02-08 16:26:32] -rw------- 1 boinc boinc        95 Feb  8 16:26 pilot_heartbeat.json
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc      8192 Feb  8 16:26 boinc_mmap_file
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc        28 Feb  8 16:26 wrapper_checkpoint.txt
[2026-02-08 16:26:32] -rw------- 1 boinc boinc      4747 Feb  8 16:26 pilotlog.txt
[2026-02-08 16:26:32] -rw------- 1 boinc boinc   1464635 Feb  8 16:26 log.48431113._005894.job.log.1
[2026-02-08 16:26:32] -rw------- 1 boinc boinc       357 Feb  8 16:26 output.list
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc       620 Feb  8 16:26 runtime_log
[2026-02-08 16:26:32] -rw------- 1 boinc boinc   1802240 Feb  8 16:26 result.tar.gz
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc      8912 Feb  8 16:26 runtime_log.err
[2026-02-08 16:26:32] -rw------- 1 boinc boinc       662 Feb  8 16:26 2WyNDmSJ288n9Rq4apOajLDm4fhM0noT9bVooX4SDmdRbKDmD4uJkm.diag
[2026-02-08 16:26:32] -rw-r--r-- 1 boinc boinc     12817 Feb  8 16:26 stderr.txt
[2026-02-08 16:26:32] HITS file was successfully produced:
[2026-02-08 16:26:32] -rw------- 1 boinc boinc 258545937 Feb  8 16:25 shared/HITS.pool.root.1
[2026-02-08 16:26:32]  *** Contents of shared directory: ***
[2026-02-08 16:26:32] total 888936
[2026-02-08 16:26:32] -rw-r--r-- 2 boinc boinc 649296753 Feb  8 13:32 ATLAS.root_0
[2026-02-08 16:26:32] -rw-r--r-- 2 boinc boinc    597956 Feb  8 13:32 input.tar.gz
[2026-02-08 16:26:32] -rw-r--r-- 2 boinc boinc     15845 Feb  8 13:32 start_atlas.sh
[2026-02-08 16:26:32] -rw------- 1 boinc boinc 258545937 Feb  8 16:25 HITS.pool.root.1
[2026-02-08 16:26:32] -rw------- 1 boinc boinc   1802240 Feb  8 16:26 result.tar.gz
16:26:33 (297168): run_atlas exited; CPU time 20292.347970
16:26:33 (297168): called boinc_finish(0)

</stderr_txt>
]]>

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