Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
19:54:41 (1430310): wrapper (7.7.26015): starting
19:54:41 (1430310): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 19:54:41] Arguments: --nthreads 12
[2026-02-08 19:54:41] Threads: 12
[2026-02-08 19:54:41] Checking for CVMFS
[2026-02-08 19:54:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 19:54:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 19:54:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 19:54:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 19:54:42] 2.12.7.0 5195 2488 67216 156038 3 50 3238620 4194305 917 130560 0 2638413 99.993 82996 2294 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-02-08 19:54:42] CVMFS is ok
[2026-02-08 19:54:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 19:54:42] Checking for apptainer binary...
[2026-02-08 19:54:42] apptainer is not installed, using version from CVMFS
[2026-02-08 19:54:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 19:54:42] Trebeth
[2026-02-08 19:54:42] apptainer works
[2026-02-08 19:54:42] Set ATHENA_PROC_NUMBER=12
[2026-02-08 19:54:42] Set ATHENA_CORE_NUMBER=12
[2026-02-08 19:54:42] Starting ATLAS job with PandaID=7000875785
[2026-02-08 19:54:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 21:01:28]  *** The last 200 lines of the pilot log: ***
[2026-02-08 21:01:28]  replicas=None
[2026-02-08 21:01:28]  scope=mc23_13p6TeV
[2026-02-08 21:01:28]  status=None
[2026-02-08 21:01:28]  status_code=0
[2026-02-08 21:01:28]  storage_token=
[2026-02-08 21:01:28]  surl=/var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/log.48442031._004288.job.log.tgz.1
[2026-02-08 21:01:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/3c/log.48442031._004288.job.log.tgz.1
[2026-02-08 21:01:28]  workdir=None
[2026-02-08 21:01:28] ]
[2026-02-08 21:01:28] 2026-02-09 02:00:53,999 | INFO     | transferring file log.48442031._004288.job.log.tgz.1 from /var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/log.48442031._004288.job.log.tgz.1 to /var/lib/boinc
[2026-02-08 21:01:28] 2026-02-09 02:00:53,999 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/log.48442031._004288.job.log.tgz.1 /var/lib/boinc-client/slots/9/log.484420
[2026-02-08 21:01:28] 2026-02-09 02:00:54,009 | INFO     | adding to output.list: log.48442031._004288.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1c/3c/log.48442031._004288.job.log.tg
[2026-02-08 21:01:28] 2026-02-09 02:00:54,010 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 21:01:28] 2026-02-09 02:00:54,010 | INFO     | summary of transferred files:
[2026-02-08 21:01:28] 2026-02-09 02:00:54,010 | INFO     |  -- lfn=log.48442031._004288.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 21:01:28] 2026-02-09 02:00:54,010 | INFO     | stage-out finished correctly
[2026-02-08 21:01:28] 2026-02-09 02:00:54,682 | INFO     | time since job start (3958s) is within the limit (349056.0s)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,509 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 21:01:28] 2026-02-09 02:00:55,598 | INFO     | job 7000875785 has state=finished
[2026-02-08 21:01:28] 2026-02-09 02:00:55,598 | INFO     | preparing for final server update for job 7000875785 in state='finished'
[2026-02-08 21:01:28] 2026-02-09 02:00:55,598 | INFO     | reading metadata from: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/jobReport.json
[2026-02-08 21:01:28] 2026-02-09 02:00:55,602 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/9/workernode_map.json
[2026-02-08 21:01:28] 2026-02-09 02:00:55,602 | INFO     | this job has now completed (state=finished)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,602 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,602 | INFO     | log transfer has been attempted: DONE
[2026-02-08 21:01:28] 2026-02-09 02:00:55,602 | INFO     | job 7000875785 has finished - writing final server update
[2026-02-08 21:01:28] 2026-02-09 02:00:55,603 | INFO     | total number of processed events: 400 (read)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,630 | INFO     | using path: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,630 | INFO     | extracted standard info from prmon json
[2026-02-08 21:01:28] 2026-02-09 02:00:55,630 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 21:01:28] 2026-02-09 02:00:55,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 21:01:28] 2026-02-09 02:00:55,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 21:01:28] 2026-02-09 02:00:55,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 21:01:28] 2026-02-09 02:00:55,633 | INFO     | fitting pss+swap vs Time
[2026-02-08 21:01:28] 2026-02-09 02:00:55,633 | INFO     | sum of square deviations: 60482994.5
[2026-02-08 21:01:28] 2026-02-09 02:00:55,634 | INFO     | sum of deviations: -5434389899.0
[2026-02-08 21:01:28] 2026-02-09 02:00:55,634 | INFO     | mean x: 1770600557.5
[2026-02-08 21:01:28] 2026-02-09 02:00:55,634 | INFO     | mean y: 2778279.6896551726
[2026-02-08 21:01:28] 2026-02-09 02:00:55,634 | INFO     | intersect: 159091028859.6402
[2026-02-08 21:01:28] 2026-02-09 02:00:55,634 | INFO     | chi2: 0.1352463971680906
[2026-02-08 21:01:28] 2026-02-09 02:00:55,634 | INFO     | current memory leak: -89.85 B/s (using 58 data points, chi2=0.14)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | could have reported an average CPU frequency of 3078 MHz (6 samples)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | ..............................
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . Timing measurements:
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . get job = 0 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . initial setup = 6 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . payload setup = 4 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . stage-in = 0 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . payload execution = 3938 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,635 | INFO     | . stage-out = 0 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,636 | INFO     | . log creation = 0 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,636 | INFO     | ..............................
[2026-02-08 21:01:28] 2026-02-09 02:00:55,717 | INFO     | 
[2026-02-08 21:01:28] 2026-02-09 02:00:55,717 | INFO     | job summary report
[2026-02-08 21:01:28] 2026-02-09 02:00:55,717 | INFO     | --------------------------------------------------
[2026-02-08 21:01:28] 2026-02-09 02:00:55,717 | INFO     | PanDA job id: 7000875785
[2026-02-08 21:01:28] 2026-02-09 02:00:55,717 | INFO     | task id: 48442031
[2026-02-08 21:01:28] 2026-02-09 02:00:55,717 | INFO     | errors: (none)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | pilot state: finished 
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | transexitcode: 0
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | exeerrorcode: 0
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | exeerrordiag: 
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | exitcode: 0
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | exitmsg: OK
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | cpuconsumptiontime: 40974 s
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | nevents: 400
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | neventsw: 0
[2026-02-08 21:01:28] 2026-02-09 02:00:55,718 | INFO     | pid: 1439536
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | pgrp: 1439536
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | corecount: 12
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | event service: False
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | sizes: {0: 2282676, 1: 2283080, 11: 2283080, 3946: 2308958, 3947: 2317970, 3948: 2318026, 3949: 2318348}
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | --------------------------------------------------
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | 
[2026-02-08 21:01:28] 2026-02-09 02:00:55,719 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/9
[2026-02-08 21:01:28] 2026-02-09 02:00:55,737 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,740 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,740 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,740 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 21:01:28] 2026-02-09 02:00:55,740 | INFO     | job 7000875785 has completed (purged errors)
[2026-02-08 21:01:28] 2026-02-09 02:00:55,740 | INFO     | overall cleanup function is called
[2026-02-08 21:01:28] 2026-02-09 02:00:56,748 | INFO     | --- collectZombieJob: --- 10, [1439536]
[2026-02-08 21:01:28] 2026-02-09 02:00:56,748 | INFO     | zombie collector waiting for pid 1439536
[2026-02-08 21:01:28] 2026-02-09 02:00:56,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 21:01:28] 2026-02-09 02:00:56,749 | INFO     | collected zombie processes
[2026-02-08 21:01:28] 2026-02-09 02:00:56,749 | INFO     | will attempt to kill all subprocesses of pid=1439536
[2026-02-08 21:01:28] 2026-02-09 02:00:56,973 | INFO     | process IDs to be killed: [1439536] (in reverse order)
[2026-02-08 21:01:28] 2026-02-09 02:00:57,032 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 21:01:28] 2026-02-09 02:00:57,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 21:01:28] 2026-02-09 02:00:57,038 | INFO     | did not find any defunct processes belonging to 1439536
[2026-02-08 21:01:28] 2026-02-09 02:00:57,041 | INFO     | did not find any defunct processes belonging to 1439536
[2026-02-08 21:01:28] 2026-02-09 02:00:57,042 | INFO     | ready for new job
[2026-02-08 21:01:28] 2026-02-09 02:00:57,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 21:01:28] 2026-02-09 02:00:57,043 | INFO     | **************************************
[2026-02-08 21:01:28] 2026-02-09 02:00:57,043 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 21:01:28] 2026-02-09 02:00:57,043 | INFO     | **************************************
[2026-02-08 21:01:28] 2026-02-09 02:00:57,043 | INFO     | 
[2026-02-08 21:01:28] 2026-02-09 02:00:57,064 | INFO     | architecture information:
[2026-02-08 21:01:28] 2026-02-09 02:00:57,064 | INFO     | executing command: cat /etc/os-release
[2026-02-08 21:01:28] 2026-02-09 02:00:57,078 | INFO     | cat /etc/os-release:
[2026-02-08 21:01:28] NAME="CentOS Linux"
[2026-02-08 21:01:28] VERSION="7 (Core)"
[2026-02-08 21:01:28] ID="centos"
[2026-02-08 21:01:28] ID_LIKE="rhel fedora"
[2026-02-08 21:01:28] VERSION_ID="7"
[2026-02-08 21:01:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 21:01:28] ANSI_COLOR="0;31"
[2026-02-08 21:01:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 21:01:28] HOME_URL="https://www.centos.org/"
[2026-02-08 21:01:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 21:01:28] 
[2026-02-08 21:01:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 21:01:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 21:01:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 21:01:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 21:01:28] 
[2026-02-08 21:01:28] 2026-02-09 02:00:57,078 | INFO     | **************************************
[2026-02-08 21:01:28] 2026-02-09 02:00:57,580 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2026-02-08 21:01:28] 2026-02-09 02:00:57,595 | INFO     | sufficient remaining disk space (372684881920 B)
[2026-02-08 21:01:28] 2026-02-09 02:00:57,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 21:01:28] 2026-02-09 02:00:57,595 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 21:01:28] 2026-02-09 02:00:57,596 | INFO     | update_server=False
[2026-02-08 21:01:28] 2026-02-09 02:00:57,596 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 21:01:28] 2026-02-09 02:00:57,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 21:01:28] 2026-02-09 02:00:57,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 21:01:28] 2026-02-09 02:00:57,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 21:01:28] 2026-02-09 02:00:58,268 | INFO     | all data control threads have been joined
[2026-02-08 21:01:28] 2026-02-09 02:00:58,440 | INFO     | all payload control threads have been joined
[2026-02-08 21:01:28] 2026-02-09 02:00:58,600 | INFO     | [job] retrieve thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,604 | INFO     | [job] queue monitor thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,613 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,692 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,808 | INFO     | [data] copytool_in thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,920 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,922 | INFO     | [payload] failed_post thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:58,975 | INFO     | all job control threads have been joined
[2026-02-08 21:01:28] 2026-02-09 02:00:59,076 | INFO     | [payload] validate_post thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:59,272 | INFO     | [data] control thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:59,444 | INFO     | [payload] control thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:59,593 | WARNING  | process 1439536 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 21:01:28] 2026-02-09 02:00:59,604 | INFO     | [data] copytool_out thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:59,737 | INFO     | using path: /var/lib/boinc-client/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 21:01:28] 2026-02-09 02:00:59,739 | INFO     | using path: /var/lib/boinc-client/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 21:01:28] 2026-02-09 02:00:59,739 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-08 21:01:28] 2026-02-09 02:00:59,739 | WARNING  | maxPSS not found in memory monitor output
[2026-02-08 21:01:28] 2026-02-09 02:00:59,740 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/payload.stdout) since it has not been created yet
[2026-02-08 21:01:28] 2026-02-09 02:00:59,740 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2026-02-08 21:01:28] 2026-02-09 02:00:59,756 | INFO     | sufficient remaining disk space (372684881920 B)
[2026-02-08 21:01:28] 2026-02-09 02:00:59,756 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-08 21:01:28] 2026-02-09 02:00:59,756 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/9/PanDA_Pilot-7000875785/HITS.48442031._004288.pool.root.1 since it does not exist
[2026-02-08 21:01:28] 2026-02-09 02:00:59,772 | INFO     | [job] validate thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:59,980 | INFO     | [job] control thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:00:59,985 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:01:00,001 | INFO     | number of running child processes to parent process 1439536: 1
[2026-02-08 21:01:28] 2026-02-09 02:01:00,001 | INFO     | maximum number of monitored processes: 6
[2026-02-08 21:01:28] 2026-02-09 02:01:00,001 | INFO     | aborting job monitoring since job object (job id=7000875785) has expired
[2026-02-08 21:01:28] 2026-02-09 02:01:00,001 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 21:01:28] 2026-02-09 02:01:00,001 | INFO     | will abort loop
[2026-02-08 21:01:28] 2026-02-09 02:01:01,005 | INFO     | [job] job monitor thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:01:01,604 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 21:01:28] 2026-02-09 02:01:02,176 | INFO     | [monitor] cgroup control has ended
[2026-02-08 21:01:28] 2026-02-09 02:01:02,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746349016896)>', '<ExcThread(monitor, started 139745619343104)>']
[2026-02-08 21:01:28] 2026-02-09 02:01:07,304 | INFO     | all workflow threads have been joined
[2026-02-08 21:01:28] 2026-02-09 02:01:07,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 21:01:28] 2026-02-09 02:01:07,304 | INFO     | traces error code: 0
[2026-02-08 21:01:28] 2026-02-09 02:01:07,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 21:01:28] 2026-02-09 02:01:27,953 | INFO     | PID=1434715 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 21:01:28] 2026-02-09 02:01:27,954 | INFO     | .. there are 2 such processes running
[2026-02-08 21:01:28] 2026-02-09 02:01:27,954 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 21:01:28] 2026-02-09 02:01:27,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 21:01:28] 2026-02-09 02:01:27,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 21:01:28] 2026-02-09 02:01:27,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 21:01:28] 2026-02-09 02:01:27,954 | INFO     | [monitor] control thread has ended
[2026-02-08 21:01:28] 2026-02-09 02:01:28,057 [wrapper] ==== pilot stdout END ====
[2026-02-08 21:01:28] 2026-02-09 02:01:28,059 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 21:01:28] 2026-02-09 02:01:28,060 [wrapper] pilotpid: 1434715
[2026-02-08 21:01:28] 2026-02-09 02:01:28,062 [wrapper] Pilot exit status: 0
[2026-02-08 21:01:28] 2026-02-09 02:01:28,068 [wrapper] pandaids: 7000875785
[2026-02-08 21:01:28] 2026-02-09 02:01:28,107 [wrapper] cleanup supervisor_pilot 1469905 1434716
[2026-02-08 21:01:28] 2026-02-09 02:01:28,109 [wrapper] Test setup, not cleaning
[2026-02-08 21:01:28] 2026-02-09 02:01:28,110 [wrapper] apfmon messages muted
[2026-02-08 21:01:28] 2026-02-09 02:01:28,112 [wrapper] ==== wrapper stdout END ====
[2026-02-08 21:01:28] 2026-02-09 02:01:28,113 [wrapper] ==== wrapper stderr END ====
[2026-02-08 21:01:28]  *** Error codes and diagnostics ***
[2026-02-08 21:01:28]     "exeErrorCode": 0,
[2026-02-08 21:01:28]     "exeErrorDiag": "",
[2026-02-08 21:01:28]     "pilotErrorCode": 0,
[2026-02-08 21:01:28]     "pilotErrorDiag": "",
[2026-02-08 21:01:28]  *** Listing of results directory ***
[2026-02-08 21:01:28] total 669720
[2026-02-08 21:01:28] -rwx------ 1 boinc boinc     36322 Feb  7 13:36 runpilot2-wrapper.sh
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc    584627 Feb  7 13:39 pilot3.tar.gz
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc      5111 Feb  7 13:40 queuedata.json
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc       100 Feb  8 19:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 21:01:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 19:54 run_atlas
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc       105 Feb  8 19:54 job.xml
[2026-02-08 21:01:28] -rw-r--r-- 2 boinc boinc     15845 Feb  8 19:54 start_atlas.sh
[2026-02-08 21:01:28] drwxrwx--x 2 boinc boinc      4096 Feb  8 19:54 shared
[2026-02-08 21:01:28] -rw-r--r-- 2 boinc boinc    597955 Feb  8 19:54 input.tar.gz
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc      7579 Feb  8 19:54 init_data.xml
[2026-02-08 21:01:28] -rw-r--r-- 2 boinc boinc 495384563 Feb  8 19:54 EVNT.48442027._000085.pool.root.1
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc         0 Feb  8 19:54 boinc_lockfile
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc      2529 Feb  8 19:54 pandaJob.out
[2026-02-08 21:01:28] -rw------- 1 boinc boinc        50 Feb  8 19:54 setup.sh.local
[2026-02-08 21:01:28] -rw------- 1 boinc boinc   1009504 Feb  8 19:54 agis_schedconf.cvmfs.json
[2026-02-08 21:01:28] -rw------- 1 boinc boinc   1513088 Feb  8 19:54 agis_ddmendpoints.agis.ALL.json
[2026-02-08 21:01:28] -rw------- 1 boinc boinc       430 Feb  8 19:54 workernode_map.json
[2026-02-08 21:01:28] drwx------ 5 boinc boinc      4096 Feb  8 19:54 pilot3
[2026-02-08 21:01:28] -rw------- 1 boinc boinc 184451935 Feb  8 21:00 HITS.48442031._004288.pool.root.1
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc       530 Feb  8 21:00 boinc_task_state.xml
[2026-02-08 21:01:28] -rw------- 1 boinc boinc        95 Feb  8 21:00 pilot_heartbeat.json
[2026-02-08 21:01:28] -rw------- 1 boinc boinc      1029 Feb  8 21:00 memory_monitor_summary.json
[2026-02-08 21:01:28] -rw------- 1 boinc boinc    408761 Feb  8 21:00 log.48442031._004288.job.log.tgz.1
[2026-02-08 21:01:28] -rw------- 1 boinc boinc      6335 Feb  8 21:00 heartbeat.json
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc      8192 Feb  8 21:01 boinc_mmap_file
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc        27 Feb  8 21:01 wrapper_checkpoint.txt
[2026-02-08 21:01:28] -rw------- 1 boinc boinc       822 Feb  8 21:01 pilotlog.txt
[2026-02-08 21:01:28] -rw------- 1 boinc boinc    600260 Feb  8 21:01 log.48442031._004288.job.log.1
[2026-02-08 21:01:28] -rw------- 1 boinc boinc       357 Feb  8 21:01 output.list
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc       620 Feb  8 21:01 runtime_log
[2026-02-08 21:01:28] -rw------- 1 boinc boinc   1024000 Feb  8 21:01 result.tar.gz
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc      9403 Feb  8 21:01 runtime_log.err
[2026-02-08 21:01:28] -rw------- 1 boinc boinc       650 Feb  8 21:01 15ZKDmqL288nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlzbKDm2uvQ0n.diag
[2026-02-08 21:01:28] -rw-r--r-- 1 boinc boinc     21819 Feb  8 21:01 stderr.txt
[2026-02-08 21:01:28] HITS file was successfully produced:
[2026-02-08 21:01:28] -rw------- 1 boinc boinc 184451935 Feb  8 21:00 shared/HITS.pool.root.1
[2026-02-08 21:01:28]  *** Contents of shared directory: ***
[2026-02-08 21:01:28] total 665516
[2026-02-08 21:01:28] -rw-r--r-- 2 boinc boinc     15845 Feb  8 19:54 start_atlas.sh
[2026-02-08 21:01:28] -rw-r--r-- 2 boinc boinc    597955 Feb  8 19:54 input.tar.gz
[2026-02-08 21:01:28] -rw-r--r-- 2 boinc boinc 495384563 Feb  8 19:54 ATLAS.root_0
[2026-02-08 21:01:28] -rw------- 1 boinc boinc 184451935 Feb  8 21:00 HITS.pool.root.1
[2026-02-08 21:01:28] -rw------- 1 boinc boinc   1024000 Feb  8 21:01 result.tar.gz
21:01:29 (1430310): run_atlas exited; CPU time 41040.052433
21:01:29 (1430310): called boinc_finish(0)

</stderr_txt>
]]>

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