Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:44 (3656987): wrapper (7.7.26015): starting
12:34:44 (3656987): wrapper: running run_atlas (--nthreads 2)
[2026-02-08 12:34:44] Arguments: --nthreads 2
[2026-02-08 12:34:44] Threads: 2
[2026-02-08 12:34:44] Checking for CVMFS
[2026-02-08 12:34:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 12:34:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 12:34:44] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 12:34:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 12:34:44] 2.9.2.0 3340523 3281 56820 156018 1 50 29038779 36864000 0 130560 0 940359 99.976 127152 12542 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 12:34:44] CVMFS is ok
[2026-02-08 12:34:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 12:34:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 12:34:44] Further information can be found at the LHC@home message board.
[2026-02-08 12:34:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 12:34:44] Checking for apptainer binary...
[2026-02-08 12:34:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 12:34:44] Running /usr/bin/apptainer --version
[2026-02-08 12:34:44] apptainer version 1.4.1-1.1
[2026-02-08 12:34:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 12:34:44] thA315
[2026-02-08 12:34:44] apptainer works
[2026-02-08 12:34:44] Set ATHENA_PROC_NUMBER=2
[2026-02-08 12:34:44] Set ATHENA_CORE_NUMBER=2
[2026-02-08 12:34:44] Starting ATLAS job with PandaID=7000836265
[2026-02-08 12:34:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 15:22:24]  *** The last 200 lines of the pilot log: ***
[2026-02-08 15:22:24] 2026-02-08 14:21:17,898 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 15:22:24] 2026-02-08 14:21:17,898 | INFO     | job 7000836265 has completed (purged errors)
[2026-02-08 15:22:24] 2026-02-08 14:21:17,898 | INFO     | overall cleanup function is called
[2026-02-08 15:22:24] 2026-02-08 14:21:18,904 | INFO     | --- collectZombieJob: --- 10, [3665425]
[2026-02-08 15:22:24] 2026-02-08 14:21:18,905 | INFO     | zombie collector waiting for pid 3665425
[2026-02-08 15:22:24] 2026-02-08 14:21:18,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 15:22:24] 2026-02-08 14:21:18,905 | INFO     | collected zombie processes
[2026-02-08 15:22:24] 2026-02-08 14:21:18,905 | INFO     | will attempt to kill all subprocesses of pid=3665425
[2026-02-08 15:22:24] 2026-02-08 14:21:18,938 | INFO     | process IDs to be killed: [3665425] (in reverse order)
[2026-02-08 15:22:24] 2026-02-08 14:21:18,957 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 15:22:24] 2026-02-08 14:21:18,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 15:22:24] 2026-02-08 14:21:18,958 | INFO     | did not find any defunct processes belonging to 3665425
[2026-02-08 15:22:24] 2026-02-08 14:21:18,959 | INFO     | did not find any defunct processes belonging to 3665425
[2026-02-08 15:22:24] 2026-02-08 14:21:18,959 | INFO     | ready for new job
[2026-02-08 15:22:24] 2026-02-08 14:21:18,959 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 15:22:24] 2026-02-08 14:21:18,960 | INFO     | **************************************
[2026-02-08 15:22:24] 2026-02-08 14:21:18,960 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 15:22:24] 2026-02-08 14:21:18,960 | INFO     | **************************************
[2026-02-08 15:22:24] 2026-02-08 14:21:18,960 | INFO     | 
[2026-02-08 15:22:24] 2026-02-08 14:21:18,960 | INFO     | architecture information:
[2026-02-08 15:22:24] 2026-02-08 14:21:18,960 | INFO     | executing command: cat /etc/os-release
[2026-02-08 15:22:24] 2026-02-08 14:21:18,968 | INFO     | cat /etc/os-release:
[2026-02-08 15:22:24] NAME="CentOS Linux"
[2026-02-08 15:22:24] VERSION="7 (Core)"
[2026-02-08 15:22:24] ID="centos"
[2026-02-08 15:22:24] ID_LIKE="rhel fedora"
[2026-02-08 15:22:24] VERSION_ID="7"
[2026-02-08 15:22:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 15:22:24] ANSI_COLOR="0;31"
[2026-02-08 15:22:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 15:22:24] HOME_URL="https://www.centos.org/"
[2026-02-08 15:22:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 15:22:24] 
[2026-02-08 15:22:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 15:22:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 15:22:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 15:22:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 15:22:24] 
[2026-02-08 15:22:24] 2026-02-08 14:21:18,968 | INFO     | **************************************
[2026-02-08 15:22:24] 2026-02-08 14:21:19,472 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | INFO     | sufficient remaining disk space (492337889280 B)
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | INFO     | update_server=False
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 15:22:24] 2026-02-08 14:21:19,484 | INFO     | aborting loop
[2026-02-08 15:22:24] 2026-02-08 14:21:19,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 15:22:24] 2026-02-08 14:21:19,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 15:22:24] 2026-02-08 14:21:19,537 | INFO     | all payload control threads have been joined
[2026-02-08 15:22:24] 2026-02-08 14:21:19,592 | INFO     | all data control threads have been joined
[2026-02-08 15:22:24] 2026-02-08 14:21:20,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 15:22:24] 2026-02-08 14:21:20,469 | INFO     | all job control threads have been joined
[2026-02-08 15:22:24] 2026-02-08 14:21:20,490 | INFO     | [job] retrieve thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,491 | INFO     | [job] queue monitor thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,491 | INFO     | [job] job monitor thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,543 | INFO     | [payload] control thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,547 | INFO     | [payload] failed_post thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,598 | INFO     | [data] control thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,726 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:20,764 | INFO     | [data] copytool_in thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:21,111 | INFO     | [payload] validate_post thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:21,294 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:21,475 | INFO     | [job] control thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:21,840 | INFO     | [job] validate thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:21,855 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:21,921 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:22,428 | INFO     | [data] copytool_out thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:21:23,492 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 15:22:24] 2026-02-08 14:22:18,503 | INFO     | [monitor] cgroup control has ended
[2026-02-08 15:22:24] 2026-02-08 14:22:19,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318531938112)>', '<ExcThread(monitor, started 140318015989504)>']
[2026-02-08 15:22:24] 2026-02-08 14:22:19,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 15:22:24] 2026-02-08 14:22:19,794 | INFO     | [monitor] control thread has ended
[2026-02-08 15:22:24] 2026-02-08 14:22:24,333 | INFO     | all workflow threads have been joined
[2026-02-08 15:22:24] 2026-02-08 14:22:24,334 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 15:22:24] 2026-02-08 14:22:24,334 | INFO     | traces error code: 0
[2026-02-08 15:22:24] 2026-02-08 14:22:24,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 15:22:24] 2026-02-08 14:22:24,378 [wrapper] ==== pilot stdout END ====
[2026-02-08 15:22:24] 2026-02-08 14:22:24,381 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 15:22:24] 2026-02-08 14:22:24,383 [wrapper] pilotpid: 3661013
[2026-02-08 15:22:24] 2026-02-08 14:22:24,385 [wrapper] Pilot exit status: 0
[2026-02-08 15:22:24] 2026-02-08 14:22:24,390 [wrapper] pandaids: 7000836265
[2026-02-08 15:22:24] 2026-02-08 14:22:24,403 [wrapper] cleanup supervisor_pilot 3670535 3661014
[2026-02-08 15:22:24] 2026-02-08 14:22:24,405 [wrapper] Test setup, not cleaning
[2026-02-08 15:22:24] 2026-02-08 14:22:24,407 [wrapper] apfmon messages muted
[2026-02-08 15:22:24] 2026-02-08 14:22:24,409 [wrapper] ==== wrapper stdout END ====
[2026-02-08 15:22:24] 2026-02-08 14:22:24,411 [wrapper] ==== wrapper stderr END ====
[2026-02-08 15:22:24]  *** Error codes and diagnostics ***
[2026-02-08 15:22:24]     "exeErrorCode": 0,
[2026-02-08 15:22:24]     "exeErrorDiag": "",
[2026-02-08 15:22:24]     "pilotErrorCode": 0,
[2026-02-08 15:22:24]     "pilotErrorDiag": "",
[2026-02-08 15:22:24]  *** Listing of results directory ***
[2026-02-08 15:22:24] total 886660
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc    584627 Feb  7 19:32 pilot3.tar.gz
[2026-02-08 15:22:24] -rwx------ 1 boinc boinc     36322 Feb  7 19:34 runpilot2-wrapper.sh
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc      5111 Feb  7 19:35 queuedata.json
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc       100 Feb  8 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 15:22:24] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 12:34 run_atlas
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc       105 Feb  8 12:34 job.xml
[2026-02-08 15:22:24] -rw-r--r-- 2 boinc boinc 647901988 Feb  8 12:34 EVNT.48431111._000116.pool.root.1
[2026-02-08 15:22:24] drwxrwx--x 2 boinc boinc      4096 Feb  8 12:34 shared
[2026-02-08 15:22:24] -rw-r--r-- 2 boinc boinc    597951 Feb  8 12:34 input.tar.gz
[2026-02-08 15:22:24] -rw-r--r-- 2 boinc boinc     15845 Feb  8 12:34 start_atlas.sh
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc         0 Feb  8 12:34 boinc_setup_complete
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc      6206 Feb  8 12:34 init_data.xml
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc         0 Feb  8 12:34 boinc_lockfile
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc      2545 Feb  8 12:34 pandaJob.out
[2026-02-08 15:22:24] -rw------- 1 boinc boinc   1009518 Feb  8 12:34 agis_schedconf.cvmfs.json
[2026-02-08 15:22:24] -rw------- 1 boinc boinc   1513088 Feb  8 12:34 agis_ddmendpoints.agis.ALL.json
[2026-02-08 15:22:24] -rw------- 1 boinc boinc       425 Feb  8 12:35 workernode_map.json
[2026-02-08 15:22:24] drwx------ 5 boinc boinc      4096 Feb  8 12:35 pilot3
[2026-02-08 15:22:24] -rw------- 1 boinc boinc        95 Feb  8 15:20 pilot_heartbeat.json
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc       530 Feb  8 15:20 boinc_task_state.xml
[2026-02-08 15:22:24] -rw------- 1 boinc boinc 252585930 Feb  8 15:20 HITS.48431113._005872.pool.root.1
[2026-02-08 15:22:24] -rw------- 1 boinc boinc      1015 Feb  8 15:21 memory_monitor_summary.json
[2026-02-08 15:22:24] -rw------- 1 boinc boinc    343660 Feb  8 15:21 log.48431113._005872.job.log.tgz.1
[2026-02-08 15:22:24] -rw------- 1 boinc boinc      6303 Feb  8 15:21 heartbeat.json
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc        28 Feb  8 15:22 wrapper_checkpoint.txt
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc      8192 Feb  8 15:22 boinc_mmap_file
[2026-02-08 15:22:24] -rw------- 1 boinc boinc      4552 Feb  8 15:22 pilotlog.txt
[2026-02-08 15:22:24] -rw------- 1 boinc boinc   1416835 Feb  8 15:22 log.48431113._005872.job.log.1
[2026-02-08 15:22:24] -rw------- 1 boinc boinc       357 Feb  8 15:22 output.list
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc       620 Feb  8 15:22 runtime_log
[2026-02-08 15:22:24] -rw------- 1 boinc boinc   1781760 Feb  8 15:22 result.tar.gz
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc      8897 Feb  8 15:22 runtime_log.err
[2026-02-08 15:22:24] -rw------- 1 boinc boinc       659 Feb  8 15:22 mUSNDmSJ288n9Rq4apOajLDm4fhM0noT9bVooX4SDmNRbKDmIJiAom.diag
[2026-02-08 15:22:24] -rw-r--r-- 1 boinc boinc     10826 Feb  8 15:22 stderr.txt
[2026-02-08 15:22:24] HITS file was successfully produced:
[2026-02-08 15:22:24] -rw------- 1 boinc boinc 252585930 Feb  8 15:20 shared/HITS.pool.root.1
[2026-02-08 15:22:24]  *** Contents of shared directory: ***
[2026-02-08 15:22:24] total 881736
[2026-02-08 15:22:24] -rw-r--r-- 2 boinc boinc 647901988 Feb  8 12:34 ATLAS.root_0
[2026-02-08 15:22:24] -rw-r--r-- 2 boinc boinc    597951 Feb  8 12:34 input.tar.gz
[2026-02-08 15:22:24] -rw-r--r-- 2 boinc boinc     15845 Feb  8 12:34 start_atlas.sh
[2026-02-08 15:22:24] -rw------- 1 boinc boinc 252585930 Feb  8 15:20 HITS.pool.root.1
[2026-02-08 15:22:24] -rw------- 1 boinc boinc   1781760 Feb  8 15:22 result.tar.gz
15:22:26 (3656987): run_atlas exited; CPU time 19509.523667
15:22:26 (3656987): called boinc_finish(0)

</stderr_txt>
]]>

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