Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:30:21 (22218): wrapper (7.7.26015): starting
23:30:21 (22218): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 23:30:21] Arguments: --nthreads 12
[2026-02-07 23:30:21] Threads: 12
[2026-02-07 23:30:21] Checking for CVMFS
[2026-02-07 23:30:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 23:30:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 23:30:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 23:30:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 23:30:22] 2.11.2.0 3035 393718 98324 156007 1 50 19443816 20275200 1 130560 3 168598719 99.949 24108785 17207 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-07 23:30:22] CVMFS is ok
[2026-02-07 23:30:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 23:30:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 23:30:22] Further information can be found at the LHC@home message board.
[2026-02-07 23:30:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 23:30:22] Checking for apptainer binary...
[2026-02-07 23:30:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 23:30:22] Running /usr/bin/apptainer --version
[2026-02-07 23:30:22] apptainer version 1.3.2-1.el7
[2026-02-07 23:30:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 23:30:23] c-205-31.aglt2.org
[2026-02-07 23:30:23] apptainer works
[2026-02-07 23:30:23] Set ATHENA_PROC_NUMBER=12
[2026-02-07 23:30:23] Set ATHENA_CORE_NUMBER=12
[2026-02-07 23:30:23] Starting ATLAS job with PandaID=7000923651
[2026-02-07 23:30:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 00:44:57]  *** The last 200 lines of the pilot log: ***
[2026-02-08 00:44:57]  is_altstaged=None
[2026-02-08 00:44:57]  is_tar=False
[2026-02-08 00:44:57]  lfn=log.48318010._012051.job.log.tgz.1
[2026-02-08 00:44:57]  mtime=0
[2026-02-08 00:44:57]  protocol_id=None
[2026-02-08 00:44:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 00:44:57]  replicas=None
[2026-02-08 00:44:57]  scope=mc23_13p6TeV
[2026-02-08 00:44:57]  status=None
[2026-02-08 00:44:57]  status_code=0
[2026-02-08 00:44:57]  storage_token=
[2026-02-08 00:44:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7000923651/log.48318010._012051.job.log.tgz.1
[2026-02-08 00:44:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/b2/log.48318010._012051.job.log.tgz.1
[2026-02-08 00:44:57]  workdir=None
[2026-02-08 00:44:57] ]
[2026-02-08 00:44:57] 2026-02-08 05:44:06,027 | INFO     | transferring file log.48318010._012051.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7000923651/log.48318010._012051.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-08 00:44:57] 2026-02-08 05:44:06,028 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7000923651/log.48318010._012051.job.log.tgz.1 /tmp/boinchome/slots/0/log.48318010._012051.job
[2026-02-08 00:44:57] 2026-02-08 05:44:06,049 | INFO     | adding to output.list: log.48318010._012051.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/b2/log.48318010._012051.job.log.tg
[2026-02-08 00:44:57] 2026-02-08 05:44:06,050 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 00:44:57] 2026-02-08 05:44:06,050 | INFO     | summary of transferred files:
[2026-02-08 00:44:57] 2026-02-08 05:44:06,050 | INFO     |  -- lfn=log.48318010._012051.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 00:44:57] 2026-02-08 05:44:06,051 | INFO     | stage-out finished correctly
[2026-02-08 00:44:57] 2026-02-08 05:44:06,319 | INFO     | time since job start (4402s) is within the limit (349056.0s)
[2026-02-08 00:44:57] 2026-02-08 05:44:06,679 | WARNING  | process 30633 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 00:44:57] 2026-02-08 05:44:06,679 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7000923651/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 00:44:57] 2026-02-08 05:44:06,764 | INFO     | number of running child processes to parent process 30633: 1
[2026-02-08 00:44:57] 2026-02-08 05:44:06,764 | INFO     | maximum number of monitored processes: 6
[2026-02-08 00:44:57] 2026-02-08 05:44:08,048 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 00:44:57] 2026-02-08 05:44:08,320 | INFO     | time since job start (4404s) is within the limit (349056.0s)
[2026-02-08 00:44:57] 2026-02-08 05:44:09,267 | INFO     | monitor loop #335: job 0:7000923651 is in state 'finished'
[2026-02-08 00:44:57] 2026-02-08 05:44:09,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,325 | INFO     | time since job start (4406s) is within the limit (349056.0s)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,667 | INFO     | job 7000923651 has state=finished
[2026-02-08 00:44:57] 2026-02-08 05:44:10,667 | INFO     | preparing for final server update for job 7000923651 in state='finished'
[2026-02-08 00:44:57] 2026-02-08 05:44:10,667 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7000923651/jobReport.json
[2026-02-08 00:44:57] 2026-02-08 05:44:10,670 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-08 00:44:57] 2026-02-08 05:44:10,670 | INFO     | this job has now completed (state=finished)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,671 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,671 | INFO     | log transfer has been attempted: DONE
[2026-02-08 00:44:57] 2026-02-08 05:44:10,671 | INFO     | job 7000923651 has finished - writing final server update
[2026-02-08 00:44:57] 2026-02-08 05:44:10,671 | INFO     | total number of processed events: 400 (read)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,674 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7000923651/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,675 | INFO     | extracted standard info from prmon json
[2026-02-08 00:44:57] 2026-02-08 05:44:10,675 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 00:44:57] 2026-02-08 05:44:10,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 00:44:57] 2026-02-08 05:44:10,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 00:44:57] 2026-02-08 05:44:10,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 00:44:57] 2026-02-08 05:44:10,676 | INFO     | fitting pss+swap vs Time
[2026-02-08 00:44:57] 2026-02-08 05:44:10,677 | INFO     | sum of square deviations: 85136480.0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,677 | INFO     | sum of deviations: -7447064708.000004
[2026-02-08 00:44:57] 2026-02-08 05:44:10,677 | INFO     | mean x: 1770527325.0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,677 | INFO     | mean y: 2791089.0615384616
[2026-02-08 00:44:57] 2026-02-08 05:44:10,677 | INFO     | intersect: 154874493049.9266
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | chi2: 0.08604630875908788
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | current memory leak: -87.47 B/s (using 65 data points, chi2=0.09)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | could have reported an average CPU frequency of 1684 MHz (6 samples)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | ..............................
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | . Timing measurements:
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | . get job = 0 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,678 | INFO     | . initial setup = 7 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,679 | INFO     | . payload setup = 7 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,679 | INFO     | . stage-in = 0 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,679 | INFO     | . payload execution = 4379 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,679 | INFO     | . stage-out = 0 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,679 | INFO     | . log creation = 0 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,679 | INFO     | ..............................
[2026-02-08 00:44:57] 2026-02-08 05:44:10,754 | INFO     | 
[2026-02-08 00:44:57] 2026-02-08 05:44:10,754 | INFO     | job summary report
[2026-02-08 00:44:57] 2026-02-08 05:44:10,755 | INFO     | --------------------------------------------------
[2026-02-08 00:44:57] 2026-02-08 05:44:10,755 | INFO     | PanDA job id: 7000923651
[2026-02-08 00:44:57] 2026-02-08 05:44:10,755 | INFO     | task id: 48318010
[2026-02-08 00:44:57] 2026-02-08 05:44:10,755 | INFO     | errors: (none)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,755 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 00:44:57] 2026-02-08 05:44:10,755 | INFO     | pilot state: finished 
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | transexitcode: 0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | exeerrorcode: 0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | exeerrordiag: 
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | exitcode: 0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | exitmsg: OK
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | cpuconsumptiontime: 47373 s
[2026-02-08 00:44:57] 2026-02-08 05:44:10,756 | INFO     | nevents: 400
[2026-02-08 00:44:57] 2026-02-08 05:44:10,757 | INFO     | neventsw: 0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,757 | INFO     | pid: 30633
[2026-02-08 00:44:57] 2026-02-08 05:44:10,757 | INFO     | pgrp: 30633
[2026-02-08 00:44:57] 2026-02-08 05:44:10,757 | INFO     | corecount: 12
[2026-02-08 00:44:57] 2026-02-08 05:44:10,757 | INFO     | event service: False
[2026-02-08 00:44:57] 2026-02-08 05:44:10,757 | INFO     | sizes: {0: 2282007, 1: 2283125, 12: 2283125, 4389: 2309201, 4390: 2318199, 4392: 2318255, 4395: 2318577}
[2026-02-08 00:44:57] 2026-02-08 05:44:10,758 | INFO     | --------------------------------------------------
[2026-02-08 00:44:57] 2026-02-08 05:44:10,758 | INFO     | 
[2026-02-08 00:44:57] 2026-02-08 05:44:10,758 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-08 00:44:57] 2026-02-08 05:44:10,780 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,780 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,780 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,781 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,781 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,781 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,781 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,781 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,781 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,782 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,782 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,782 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,782 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,782 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,782 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,783 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,783 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,783 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,783 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,783 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 00:44:57] 2026-02-08 05:44:10,784 | INFO     | job 7000923651 has completed (purged errors)
[2026-02-08 00:44:57] 2026-02-08 05:44:10,784 | INFO     | overall cleanup function is called
[2026-02-08 00:44:57] 2026-02-08 05:44:11,792 | INFO     | --- collectZombieJob: --- 10, [30633]
[2026-02-08 00:44:57] 2026-02-08 05:44:11,792 | INFO     | zombie collector waiting for pid 30633
[2026-02-08 00:44:57] 2026-02-08 05:44:11,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 00:44:57] 2026-02-08 05:44:11,793 | INFO     | collected zombie processes
[2026-02-08 00:44:57] 2026-02-08 05:44:11,793 | INFO     | will attempt to kill all subprocesses of pid=30633
[2026-02-08 00:44:57] 2026-02-08 05:44:11,879 | INFO     | process IDs to be killed: [30633] (in reverse order)
[2026-02-08 00:44:57] 2026-02-08 05:44:11,931 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 00:44:57] 2026-02-08 05:44:11,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 00:44:57] 2026-02-08 05:44:11,935 | INFO     | did not find any defunct processes belonging to 30633
[2026-02-08 00:44:57] 2026-02-08 05:44:11,937 | INFO     | did not find any defunct processes belonging to 30633
[2026-02-08 00:44:57] 2026-02-08 05:44:11,937 | INFO     | ready for new job
[2026-02-08 00:44:57] 2026-02-08 05:44:11,937 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 00:44:57] 2026-02-08 05:44:11,938 | INFO     | **************************************
[2026-02-08 00:44:57] 2026-02-08 05:44:11,938 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 00:44:57] 2026-02-08 05:44:11,939 | INFO     | **************************************
[2026-02-08 00:44:57] 2026-02-08 05:44:11,939 | INFO     | 
[2026-02-08 00:44:57] 2026-02-08 05:44:11,939 | INFO     | architecture information:
[2026-02-08 00:44:57] 2026-02-08 05:44:11,940 | INFO     | executing command: cat /etc/os-release
[2026-02-08 00:44:57] 2026-02-08 05:44:11,955 | INFO     | cat /etc/os-release:
[2026-02-08 00:44:57] NAME="CentOS Linux"
[2026-02-08 00:44:57] VERSION="7 (Core)"
[2026-02-08 00:44:57] ID="centos"
[2026-02-08 00:44:57] ID_LIKE="rhel fedora"
[2026-02-08 00:44:57] VERSION_ID="7"
[2026-02-08 00:44:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 00:44:57] ANSI_COLOR="0;31"
[2026-02-08 00:44:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 00:44:57] HOME_URL="https://www.centos.org/"
[2026-02-08 00:44:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 00:44:57] 
[2026-02-08 00:44:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 00:44:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 00:44:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 00:44:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 00:44:57] 
[2026-02-08 00:44:57] 2026-02-08 05:44:11,955 | INFO     | **************************************
[2026-02-08 00:44:57] 2026-02-08 05:44:12,458 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-08 00:44:57] 2026-02-08 05:44:12,474 | INFO     | sufficient remaining disk space (28797042688 B)
[2026-02-08 00:44:57] 2026-02-08 05:44:12,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 00:44:57] 2026-02-08 05:44:12,475 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 00:44:57] 2026-02-08 05:44:12,475 | INFO     | update_server=False
[2026-02-08 00:44:57] 2026-02-08 05:44:12,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 00:44:57] 2026-02-08 05:44:12,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 00:44:57] 2026-02-08 05:44:12,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 00:44:57] 2026-02-08 05:44:12,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 00:44:57] 2026-02-08 05:44:12,774 | INFO     | aborting loop
[2026-02-08 00:44:57] 2026-02-08 05:44:12,899 | INFO     | all data control threads have been joined
[2026-02-08 00:44:57] 2026-02-08 05:44:13,481 | INFO     | [job] retrieve thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,482 | INFO     | [job] queue monitor thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,730 | INFO     | [payload] failed_post thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,779 | INFO     | [job] job monitor thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,834 | INFO     | all payload control threads have been joined
[2026-02-08 00:44:57] 2026-02-08 05:44:13,857 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,905 | INFO     | [data] control thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,952 | INFO     | [job] validate thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:13,958 | INFO     | all job control threads have been joined
[2026-02-08 00:44:57] 2026-02-08 05:44:14,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 00:44:57] 2026-02-08 05:44:14,180 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,316 | INFO     | [payload] validate_post thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,348 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,354 | INFO     | [data] copytool_in thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,482 | INFO     | [data] copytool_out thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,839 | INFO     | [payload] control thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,956 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:14,963 | INFO     | [job] control thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:18,138 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 00:44:57] 2026-02-08 05:44:43,516 | INFO     | PID=26198 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-08 00:44:57] 2026-02-08 05:44:43,517 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 00:44:57] 2026-02-08 05:44:43,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 00:44:57] 2026-02-08 05:44:43,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 00:44:57] 2026-02-08 05:44:50,739 | INFO     | [monitor] cgroup control has ended
[2026-02-08 00:44:57] 2026-02-08 05:44:52,681 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470687344448)>', '<ExcThread(monitor, started 140469522659072)>']
[2026-02-08 00:44:57] 2026-02-08 05:44:53,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 00:44:57] 2026-02-08 05:44:53,565 | INFO     | [monitor] control thread has ended
[2026-02-08 00:44:57] 2026-02-08 05:44:57,683 | INFO     | all workflow threads have been joined
[2026-02-08 00:44:57] 2026-02-08 05:44:57,683 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 00:44:57] 2026-02-08 05:44:57,683 | INFO     | traces error code: 0
[2026-02-08 00:44:57] 2026-02-08 05:44:57,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 00:44:57] 2026-02-08 05:44:57,774 [wrapper] ==== pilot stdout END ====
[2026-02-08 00:44:57] 2026-02-08 05:44:57,778 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 00:44:57] 2026-02-08 05:44:57,782 [wrapper] pilotpid: 26198
[2026-02-08 00:44:57] 2026-02-08 05:44:57,785 [wrapper] Pilot exit status: 0
[2026-02-08 00:44:57] 2026-02-08 05:44:57,802 [wrapper] pandaids: 7000923651
[2026-02-08 00:44:57] 2026-02-08 05:44:57,847 [wrapper] cleanup supervisor_pilot 16614 26199
[2026-02-08 00:44:57] 2026-02-08 05:44:57,851 [wrapper] Test setup, not cleaning
[2026-02-08 00:44:57] 2026-02-08 05:44:57,855 [wrapper] apfmon messages muted
[2026-02-08 00:44:57] 2026-02-08 05:44:57,859 [wrapper] ==== wrapper stdout END ====
[2026-02-08 00:44:57] 2026-02-08 05:44:57,863 [wrapper] ==== wrapper stderr END ====
[2026-02-08 00:44:57]  *** Error codes and diagnostics ***
[2026-02-08 00:44:57]     "exeErrorCode": 0,
[2026-02-08 00:44:57]     "exeErrorDiag": "",
[2026-02-08 00:44:57]     "pilotErrorCode": 0,
[2026-02-08 00:44:57]     "pilotErrorDiag": "",
[2026-02-08 00:44:57]  *** Listing of results directory ***
[2026-02-08 00:44:57] total 671100
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas    584627 Feb  7 17:56 pilot3.tar.gz
[2026-02-08 00:44:57] -rwx------ 1 boincer umatlas     36322 Feb  7 18:00 runpilot2-wrapper.sh
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas      5111 Feb  7 18:00 queuedata.json
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas       100 Feb  7 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 00:44:57] -rwxr-xr-x 1 boincer umatlas      7986 Feb  7 23:30 run_atlas
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas       105 Feb  7 23:30 job.xml
[2026-02-08 00:44:57] -rw-r--r-- 2 boincer umatlas 495263181 Feb  7 23:30 EVNT.48318008._000220.pool.root.1
[2026-02-08 00:44:57] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 23:30 start_atlas.sh
[2026-02-08 00:44:57] drwxrwx--x 2 boincer umatlas      4096 Feb  7 23:30 shared
[2026-02-08 00:44:57] -rw-r--r-- 2 boincer umatlas    597950 Feb  7 23:30 input.tar.gz
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas         0 Feb  7 23:30 boinc_lockfile
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas      2529 Feb  7 23:30 pandaJob.out
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas        57 Feb  7 23:30 setup.sh.local
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas   1009518 Feb  7 23:30 agis_schedconf.cvmfs.json
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas   1513088 Feb  7 23:30 agis_ddmendpoints.agis.ALL.json
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas       434 Feb  7 23:30 workernode_map.json
[2026-02-08 00:44:57] drwx------ 5 boincer umatlas      4096 Feb  7 23:30 pilot3
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas      5953 Feb  8 00:37 init_data.xml
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas 185886127 Feb  8 00:43 HITS.48318010._012051.pool.root.1
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas      1043 Feb  8 00:44 memory_monitor_summary.json
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas       531 Feb  8 00:44 boinc_task_state.xml
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas    414233 Feb  8 00:44 log.48318010._012051.job.log.tgz.1
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas      6412 Feb  8 00:44 heartbeat.json
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas        27 Feb  8 00:44 wrapper_checkpoint.txt
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas      8192 Feb  8 00:44 boinc_mmap_file
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas        95 Feb  8 00:44 pilot_heartbeat.json
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas      4742 Feb  8 00:44 pilotlog.txt
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas    642075 Feb  8 00:44 log.48318010._012051.job.log.1
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas       357 Feb  8 00:44 output.list
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas       620 Feb  8 00:44 runtime_log
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas   1075200 Feb  8 00:44 result.tar.gz
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas      9343 Feb  8 00:44 runtime_log.err
[2026-02-08 00:44:57] -rw------- 1 boincer umatlas       659 Feb  8 00:44 CYdLDmoS688nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlQcKDmREIcMo.diag
[2026-02-08 00:44:57] -rw-r--r-- 1 boincer umatlas     21524 Feb  8 00:44 stderr.txt
[2026-02-08 00:44:58] HITS file was successfully produced:
[2026-02-08 00:44:58] -rw------- 1 boincer umatlas 185886127 Feb  8 00:43 shared/HITS.pool.root.1
[2026-02-08 00:44:58]  *** Contents of shared directory: ***
[2026-02-08 00:44:58] total 666844
[2026-02-08 00:44:58] -rw-r--r-- 2 boincer umatlas 495263181 Feb  7 23:30 ATLAS.root_0
[2026-02-08 00:44:58] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 23:30 start_atlas.sh
[2026-02-08 00:44:58] -rw-r--r-- 2 boincer umatlas    597950 Feb  7 23:30 input.tar.gz
[2026-02-08 00:44:58] -rw------- 1 boincer umatlas 185886127 Feb  8 00:43 HITS.pool.root.1
[2026-02-08 00:44:58] -rw------- 1 boincer umatlas   1075200 Feb  8 00:44 result.tar.gz
00:44:59 (22218): run_atlas exited; CPU time 47362.522867
00:44:59 (22218): called boinc_finish(0)

</stderr_txt>
]]>

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