Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:12:39 (857149): wrapper (7.7.26015): starting
16:12:39 (857149): wrapper: running run_atlas (--nthreads 3)
[2026-02-08 16:12:39] Arguments: --nthreads 3
[2026-02-08 16:12:39] Threads: 3
[2026-02-08 16:12:39] Checking for CVMFS
[2026-02-08 16:12:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 16:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 16:12:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 16:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 16:12:40] 2.9.2.0 4046500 3431 82932 156023 3 49 27473370 36864000 0 130560 0 1405965 99.983 126407 19763 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 16:12:40] CVMFS is ok
[2026-02-08 16:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 16:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 16:12:40] Further information can be found at the LHC@home message board.
[2026-02-08 16:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 16:12:40] Checking for apptainer binary...
[2026-02-08 16:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 16:12:40] Running /usr/bin/apptainer --version
[2026-02-08 16:12:40] apptainer version 1.4.1-1.1
[2026-02-08 16:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 16:12:40] legendA163
[2026-02-08 16:12:40] apptainer works
[2026-02-08 16:12:40] Set ATHENA_PROC_NUMBER=3
[2026-02-08 16:12:40] Set ATHENA_CORE_NUMBER=3
[2026-02-08 16:12:40] Starting ATLAS job with PandaID=7000879393
[2026-02-08 16:12:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 17:47:09]  *** The last 200 lines of the pilot log: ***
[2026-02-08 17:47:09]  guid=8eea3e3f-a8d1-4e51-8e0e-87c02d251171
[2026-02-08 17:47:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-08 17:47:09]  is_altstaged=None
[2026-02-08 17:47:09]  is_tar=False
[2026-02-08 17:47:09]  lfn=log.48318042._012827.job.log.tgz.1
[2026-02-08 17:47:09]  mtime=0
[2026-02-08 17:47:09]  protocol_id=None
[2026-02-08 17:47:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 17:47:09]  replicas=None
[2026-02-08 17:47:09]  scope=mc23_13p6TeV
[2026-02-08 17:47:09]  status=None
[2026-02-08 17:47:09]  status_code=0
[2026-02-08 17:47:09]  storage_token=
[2026-02-08 17:47:09]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7000879393/log.48318042._012827.job.log.tgz.1
[2026-02-08 17:47:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/3c/log.48318042._012827.job.log.tgz.1
[2026-02-08 17:47:09]  workdir=None
[2026-02-08 17:47:09] ]
[2026-02-08 17:47:09] 2026-02-08 16:46:35,634 | INFO     | transferring file log.48318042._012827.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7000879393/log.48318042._012827.job.log.tgz.1 to /local/data/boinc/
[2026-02-08 17:47:09] 2026-02-08 16:46:35,634 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7000879393/log.48318042._012827.job.log.tgz.1 /local/data/boinc/slots/0/log.48318042._0128
[2026-02-08 17:47:09] 2026-02-08 16:46:35,648 | INFO     | adding to output.list: log.48318042._012827.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/3c/log.48318042._012827.job.log.tg
[2026-02-08 17:47:09] 2026-02-08 16:46:35,648 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 17:47:09] 2026-02-08 16:46:35,648 | INFO     | summary of transferred files:
[2026-02-08 17:47:09] 2026-02-08 16:46:35,648 | INFO     |  -- lfn=log.48318042._012827.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 17:47:09] 2026-02-08 16:46:35,648 | INFO     | stage-out finished correctly
[2026-02-08 17:47:09] 2026-02-08 16:46:36,008 | INFO     | time since job start (5626s) is within the limit (349056.0s)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,927 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 17:47:09] 2026-02-08 16:46:36,957 | INFO     | job 7000879393 has state=finished
[2026-02-08 17:47:09] 2026-02-08 16:46:36,958 | INFO     | preparing for final server update for job 7000879393 in state='finished'
[2026-02-08 17:47:09] 2026-02-08 16:46:36,958 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7000879393/jobReport.json
[2026-02-08 17:47:09] 2026-02-08 16:46:36,959 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-02-08 17:47:09] 2026-02-08 16:46:36,959 | INFO     | this job has now completed (state=finished)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,959 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,959 | INFO     | log transfer has been attempted: DONE
[2026-02-08 17:47:09] 2026-02-08 16:46:36,959 | INFO     | job 7000879393 has finished - writing final server update
[2026-02-08 17:47:09] 2026-02-08 16:46:36,959 | INFO     | total number of processed events: 400 (read)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,960 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7000879393/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,960 | INFO     | extracted standard info from prmon json
[2026-02-08 17:47:09] 2026-02-08 16:46:36,960 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 17:47:09] 2026-02-08 16:46:36,960 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | INFO     | fitting pss+swap vs Time
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | INFO     | sum of square deviations: 190403570.0
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | INFO     | sum of deviations: -6202993498.000001
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | INFO     | mean x: 1770566455.0
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | INFO     | mean y: 2433662.5411764705
[2026-02-08 17:47:09] 2026-02-08 16:46:36,961 | INFO     | intersect: 57684189357.25798
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | chi2: 0.02238124379951844
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | current memory leak: -32.58 B/s (using 85 data points, chi2=0.02)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | could have reported an average CPU frequency of 3667 MHz (7 samples)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | ..............................
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . Timing measurements:
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . get job = 0 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . initial setup = 3 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . payload setup = 3 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . stage-in = 0 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . payload execution = 5606 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . stage-out = 0 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | . log creation = 0 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,962 | INFO     | ..............................
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | 
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | job summary report
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | --------------------------------------------------
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | PanDA job id: 7000879393
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | task id: 48318042
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | errors: (none)
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | pilot state: finished 
[2026-02-08 17:47:09] 2026-02-08 16:46:36,988 | INFO     | transexitcode: 0
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | exeerrorcode: 0
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | exeerrordiag: 
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | exitcode: 0
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | exitmsg: OK
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | cpuconsumptiontime: 16168 s
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | nevents: 400
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | neventsw: 0
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | pid: 865658
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | pgrp: 865658
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | corecount: 3
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | event service: False
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | sizes: {0: 2283107, 11: 2283107, 5612: 2309859, 5613: 2309858, 5614: 2318918, 5615: 2319296}
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | --------------------------------------------------
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | 
[2026-02-08 17:47:09] 2026-02-08 16:46:36,989 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | job 7000879393 has completed (purged errors)
[2026-02-08 17:47:09] 2026-02-08 16:46:37,003 | INFO     | overall cleanup function is called
[2026-02-08 17:47:09] 2026-02-08 16:46:38,007 | INFO     | --- collectZombieJob: --- 10, [865658]
[2026-02-08 17:47:09] 2026-02-08 16:46:38,007 | INFO     | zombie collector waiting for pid 865658
[2026-02-08 17:47:09] 2026-02-08 16:46:38,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 17:47:09] 2026-02-08 16:46:38,007 | INFO     | collected zombie processes
[2026-02-08 17:47:09] 2026-02-08 16:46:38,007 | INFO     | will attempt to kill all subprocesses of pid=865658
[2026-02-08 17:47:09] 2026-02-08 16:46:38,063 | INFO     | process IDs to be killed: [865658] (in reverse order)
[2026-02-08 17:47:09] 2026-02-08 16:46:38,093 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 17:47:09] 2026-02-08 16:46:38,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 17:47:09] 2026-02-08 16:46:38,094 | INFO     | did not find any defunct processes belonging to 865658
[2026-02-08 17:47:09] 2026-02-08 16:46:38,096 | INFO     | did not find any defunct processes belonging to 865658
[2026-02-08 17:47:09] 2026-02-08 16:46:38,096 | INFO     | ready for new job
[2026-02-08 17:47:09] 2026-02-08 16:46:38,096 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 17:47:09] 2026-02-08 16:46:38,096 | INFO     | **************************************
[2026-02-08 17:47:09] 2026-02-08 16:46:38,097 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 17:47:09] 2026-02-08 16:46:38,097 | INFO     | **************************************
[2026-02-08 17:47:09] 2026-02-08 16:46:38,097 | INFO     | 
[2026-02-08 17:47:09] 2026-02-08 16:46:38,097 | INFO     | architecture information:
[2026-02-08 17:47:09] 2026-02-08 16:46:38,097 | INFO     | executing command: cat /etc/os-release
[2026-02-08 17:47:09] 2026-02-08 16:46:38,106 | INFO     | cat /etc/os-release:
[2026-02-08 17:47:09] NAME="CentOS Linux"
[2026-02-08 17:47:09] VERSION="7 (Core)"
[2026-02-08 17:47:09] ID="centos"
[2026-02-08 17:47:09] ID_LIKE="rhel fedora"
[2026-02-08 17:47:09] VERSION_ID="7"
[2026-02-08 17:47:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 17:47:09] ANSI_COLOR="0;31"
[2026-02-08 17:47:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 17:47:09] HOME_URL="https://www.centos.org/"
[2026-02-08 17:47:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 17:47:09] 
[2026-02-08 17:47:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 17:47:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 17:47:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 17:47:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 17:47:09] 
[2026-02-08 17:47:09] 2026-02-08 16:46:38,107 | INFO     | **************************************
[2026-02-08 17:47:09] 2026-02-08 16:46:38,279 | WARNING  | process 865658 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 17:47:09] 2026-02-08 16:46:38,317 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 17:47:09] 2026-02-08 16:46:38,365 | INFO     | number of running child processes to parent process 865658: 1
[2026-02-08 17:47:09] 2026-02-08 16:46:38,365 | INFO     | maximum number of monitored processes: 6
[2026-02-08 17:47:09] 2026-02-08 16:46:38,366 | INFO     | aborting job monitoring since job object (job id=7000879393) has expired
[2026-02-08 17:47:09] 2026-02-08 16:46:38,609 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 17:47:09] 2026-02-08 16:46:38,622 | INFO     | sufficient remaining disk space (374088925184 B)
[2026-02-08 17:47:09] 2026-02-08 16:46:38,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 17:47:09] 2026-02-08 16:46:38,622 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 17:47:09] 2026-02-08 16:46:38,622 | INFO     | update_server=False
[2026-02-08 17:47:09] 2026-02-08 16:46:38,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 17:47:09] 2026-02-08 16:46:38,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 17:47:09] 2026-02-08 16:46:38,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 17:47:09] 2026-02-08 16:46:38,623 | INFO     | will abort loop
[2026-02-08 17:47:09] 2026-02-08 16:46:38,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 17:47:09] 2026-02-08 16:46:38,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 17:47:09] 2026-02-08 16:46:38,784 | INFO     | all payload control threads have been joined
[2026-02-08 17:47:09] 2026-02-08 16:46:39,527 | INFO     | all job control threads have been joined
[2026-02-08 17:47:09] 2026-02-08 16:46:39,538 | INFO     | all data control threads have been joined
[2026-02-08 17:47:09] 2026-02-08 16:46:39,627 | INFO     | [job] queue monitor thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:39,628 | INFO     | [job] retrieve thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:39,628 | INFO     | [job] job monitor thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:39,790 | INFO     | [payload] control thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:39,819 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:39,819 | INFO     | [payload] failed_post thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,344 | INFO     | [payload] validate_post thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,533 | INFO     | [job] control thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,543 | INFO     | [data] control thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,590 | INFO     | [job] validate thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,655 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,690 | INFO     | [data] copytool_out thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,728 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:40,819 | INFO     | [data] copytool_in thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:42,629 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:49,502 | INFO     | job.realtimelogging is not enabled
[2026-02-08 17:47:09] 2026-02-08 16:46:50,508 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 17:47:09] 2026-02-08 16:46:56,479 | INFO     | [monitor] cgroup control has ended
[2026-02-08 17:47:09] 2026-02-08 16:46:57,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784721217344)>', '<ExcThread(monitor, started 139784366302976)>']
[2026-02-08 17:47:09] 2026-02-08 16:47:02,507 | INFO     | all workflow threads have been joined
[2026-02-08 17:47:09] 2026-02-08 16:47:02,507 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 17:47:09] 2026-02-08 16:47:02,507 | INFO     | traces error code: 0
[2026-02-08 17:47:09] 2026-02-08 16:47:02,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 17:47:09] 2026-02-08 16:47:09,148 | INFO     | PID=861207 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 17:47:09] 2026-02-08 16:47:09,149 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 17:47:09] 2026-02-08 16:47:09,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 17:47:09] 2026-02-08 16:47:09,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 17:47:09] 2026-02-08 16:47:09,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 17:47:09] 2026-02-08 16:47:09,149 | INFO     | [monitor] control thread has ended
[2026-02-08 17:47:09] 2026-02-08 16:47:09,195 [wrapper] ==== pilot stdout END ====
[2026-02-08 17:47:09] 2026-02-08 16:47:09,198 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 17:47:09] 2026-02-08 16:47:09,201 [wrapper] pilotpid: 861207
[2026-02-08 17:47:09] 2026-02-08 16:47:09,203 [wrapper] Pilot exit status: 0
[2026-02-08 17:47:09] 2026-02-08 16:47:09,211 [wrapper] pandaids: 7000879393
[2026-02-08 17:47:09] 2026-02-08 16:47:09,230 [wrapper] cleanup supervisor_pilot  875924 861208
[2026-02-08 17:47:09] 2026-02-08 16:47:09,233 [wrapper] Test setup, not cleaning
[2026-02-08 17:47:09] 2026-02-08 16:47:09,235 [wrapper] apfmon messages muted
[2026-02-08 17:47:09] 2026-02-08 16:47:09,238 [wrapper] ==== wrapper stdout END ====
[2026-02-08 17:47:09] 2026-02-08 16:47:09,240 [wrapper] ==== wrapper stderr END ====
[2026-02-08 17:47:09]  *** Error codes and diagnostics ***
[2026-02-08 17:47:09]     "exeErrorCode": 0,
[2026-02-08 17:47:09]     "exeErrorDiag": "",
[2026-02-08 17:47:09]     "pilotErrorCode": 0,
[2026-02-08 17:47:09]     "pilotErrorDiag": "",
[2026-02-08 17:47:09]  *** Listing of results directory ***
[2026-02-08 17:47:09] total 676056
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc    584627 Feb  7 23:56 pilot3.tar.gz
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc      5111 Feb  7 23:57 queuedata.json
[2026-02-08 17:47:09] -rwx------ 1 boinc boinc     36322 Feb  7 23:57 runpilot2-wrapper.sh
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc       100 Feb  8 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 17:47:09] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 16:12 run_atlas
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc       105 Feb  8 16:12 job.xml
[2026-02-08 17:47:09] -rw-r--r-- 2 boinc boinc 496499320 Feb  8 16:12 EVNT.48318040._000247.pool.root.1
[2026-02-08 17:47:09] -rw-r--r-- 2 boinc boinc    597962 Feb  8 16:12 input.tar.gz
[2026-02-08 17:47:09] -rw-r--r-- 2 boinc boinc     15845 Feb  8 16:12 start_atlas.sh
[2026-02-08 17:47:09] drwxrwx--x 2 boinc boinc      4096 Feb  8 16:12 shared
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc         0 Feb  8 16:12 boinc_setup_complete
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc      6449 Feb  8 16:12 init_data.xml
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc         0 Feb  8 16:12 boinc_lockfile
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc      2537 Feb  8 16:12 pandaJob.out
[2026-02-08 17:47:09] -rw------- 1 boinc boinc   1009496 Feb  8 16:12 agis_schedconf.cvmfs.json
[2026-02-08 17:47:09] -rw------- 1 boinc boinc   1513088 Feb  8 16:12 agis_ddmendpoints.agis.ALL.json
[2026-02-08 17:47:09] -rw------- 1 boinc boinc       427 Feb  8 16:12 workernode_map.json
[2026-02-08 17:47:09] drwx------ 5 boinc boinc      4096 Feb  8 16:12 pilot3
[2026-02-08 17:47:09] -rw------- 1 boinc boinc 189691313 Feb  8 17:46 HITS.48318042._012827.pool.root.1
[2026-02-08 17:47:09] -rw------- 1 boinc boinc        95 Feb  8 17:46 pilot_heartbeat.json
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc       530 Feb  8 17:46 boinc_task_state.xml
[2026-02-08 17:47:09] -rw------- 1 boinc boinc      1028 Feb  8 17:46 memory_monitor_summary.json
[2026-02-08 17:47:09] -rw------- 1 boinc boinc    257798 Feb  8 17:46 log.48318042._012827.job.log.tgz.1
[2026-02-08 17:47:09] -rw------- 1 boinc boinc      6309 Feb  8 17:46 heartbeat.json
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc      8192 Feb  8 17:46 boinc_mmap_file
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc        27 Feb  8 17:46 wrapper_checkpoint.txt
[2026-02-08 17:47:09] -rw------- 1 boinc boinc       746 Feb  8 17:47 pilotlog.txt
[2026-02-08 17:47:09] -rw------- 1 boinc boinc    817122 Feb  8 17:47 log.48318042._012827.job.log.1
[2026-02-08 17:47:09] -rw------- 1 boinc boinc       357 Feb  8 17:47 output.list
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc       620 Feb  8 17:47 runtime_log
[2026-02-08 17:47:09] -rw------- 1 boinc boinc   1095680 Feb  8 17:47 result.tar.gz
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc      8916 Feb  8 17:47 runtime_log.err
[2026-02-08 17:47:09] -rw------- 1 boinc boinc       661 Feb  8 17:47 CJlLDmDQ688n9Rq4apOajLDm4fhM0noT9bVooX4SDmLsbKDm4EZ6Jm.diag
[2026-02-08 17:47:09] -rw-r--r-- 1 boinc boinc     21375 Feb  8 17:47 stderr.txt
[2026-02-08 17:47:09] HITS file was successfully produced:
[2026-02-08 17:47:09] -rw------- 1 boinc boinc 189691313 Feb  8 17:46 shared/HITS.pool.root.1
[2026-02-08 17:47:09]  *** Contents of shared directory: ***
[2026-02-08 17:47:09] total 671792
[2026-02-08 17:47:09] -rw-r--r-- 2 boinc boinc 496499320 Feb  8 16:12 ATLAS.root_0
[2026-02-08 17:47:09] -rw-r--r-- 2 boinc boinc    597962 Feb  8 16:12 input.tar.gz
[2026-02-08 17:47:09] -rw-r--r-- 2 boinc boinc     15845 Feb  8 16:12 start_atlas.sh
[2026-02-08 17:47:09] -rw------- 1 boinc boinc 189691313 Feb  8 17:46 HITS.pool.root.1
[2026-02-08 17:47:09] -rw------- 1 boinc boinc   1095680 Feb  8 17:47 result.tar.gz
17:47:11 (857149): run_atlas exited; CPU time 16203.488100
17:47:11 (857149): called boinc_finish(0)

</stderr_txt>
]]>

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