Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:03:52 (915718): wrapper (7.7.26015): starting
13:03:52 (915718): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 13:03:52] Arguments: --nthreads 4
[2026-02-08 13:03:52] Threads: 4
[2026-02-08 13:03:52] Checking for CVMFS
[2026-02-08 13:03:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 13:03:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 13:03:53] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 13:03:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 13:03:53] 2.9.2.0 8228 3278 92644 156018 0 50 31406433 36864001 0 130560 0 1596318 99.985 123984 10699 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 13:03:53] CVMFS is ok
[2026-02-08 13:03:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 13:03:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 13:03:53] Further information can be found at the LHC@home message board.
[2026-02-08 13:03:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 13:03:53] Checking for apptainer binary...
[2026-02-08 13:03:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 13:03:53] Running /usr/bin/apptainer --version
[2026-02-08 13:03:53] apptainer version 1.4.1-1.1
[2026-02-08 13:03:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 13:03:53] atlasA237
[2026-02-08 13:03:53] apptainer works
[2026-02-08 13:03:53] Set ATHENA_PROC_NUMBER=4
[2026-02-08 13:03:53] Set ATHENA_CORE_NUMBER=4
[2026-02-08 13:03:53] Starting ATLAS job with PandaID=7006627629
[2026-02-08 13:03:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 14:18:20]  *** The last 200 lines of the pilot log: ***
[2026-02-08 14:18:20] 2026-02-08 13:18:01,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | job 7006627629 has completed (purged errors)
[2026-02-08 14:18:20] 2026-02-08 13:18:01,390 | INFO     | overall cleanup function is called
[2026-02-08 14:18:20] 2026-02-08 13:18:02,397 | INFO     | --- collectZombieJob: --- 10, [924383]
[2026-02-08 14:18:20] 2026-02-08 13:18:02,397 | INFO     | zombie collector waiting for pid 924383
[2026-02-08 14:18:20] 2026-02-08 13:18:02,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 14:18:20] 2026-02-08 13:18:02,397 | INFO     | collected zombie processes
[2026-02-08 14:18:20] 2026-02-08 13:18:02,397 | INFO     | will attempt to kill all subprocesses of pid=924383
[2026-02-08 14:18:20] 2026-02-08 13:18:02,463 | INFO     | process IDs to be killed: [924383] (in reverse order)
[2026-02-08 14:18:20] 2026-02-08 13:18:02,503 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 14:18:20] 2026-02-08 13:18:02,503 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 14:18:20] 2026-02-08 13:18:02,505 | INFO     | did not find any defunct processes belonging to 924383
[2026-02-08 14:18:20] 2026-02-08 13:18:02,508 | INFO     | did not find any defunct processes belonging to 924383
[2026-02-08 14:18:20] 2026-02-08 13:18:02,508 | INFO     | ready for new job
[2026-02-08 14:18:20] 2026-02-08 13:18:02,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 14:18:20] 2026-02-08 13:18:02,508 | INFO     | **************************************
[2026-02-08 14:18:20] 2026-02-08 13:18:02,509 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 14:18:20] 2026-02-08 13:18:02,509 | INFO     | **************************************
[2026-02-08 14:18:20] 2026-02-08 13:18:02,509 | INFO     | 
[2026-02-08 14:18:20] 2026-02-08 13:18:02,509 | INFO     | architecture information:
[2026-02-08 14:18:20] 2026-02-08 13:18:02,509 | INFO     | executing command: cat /etc/os-release
[2026-02-08 14:18:20] 2026-02-08 13:18:02,523 | INFO     | cat /etc/os-release:
[2026-02-08 14:18:20] NAME="CentOS Linux"
[2026-02-08 14:18:20] VERSION="7 (Core)"
[2026-02-08 14:18:20] ID="centos"
[2026-02-08 14:18:20] ID_LIKE="rhel fedora"
[2026-02-08 14:18:20] VERSION_ID="7"
[2026-02-08 14:18:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 14:18:20] ANSI_COLOR="0;31"
[2026-02-08 14:18:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 14:18:20] HOME_URL="https://www.centos.org/"
[2026-02-08 14:18:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 14:18:20] 
[2026-02-08 14:18:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 14:18:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 14:18:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 14:18:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 14:18:20] 
[2026-02-08 14:18:20] 2026-02-08 13:18:02,523 | INFO     | **************************************
[2026-02-08 14:18:20] 2026-02-08 13:18:03,026 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 14:18:20] 2026-02-08 13:18:03,040 | INFO     | sufficient remaining disk space (323552804864 B)
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | INFO     | update_server=False
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 14:18:20] 2026-02-08 13:18:03,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 14:18:20] 2026-02-08 13:18:03,322 | INFO     | all data control threads have been joined
[2026-02-08 14:18:20] 2026-02-08 13:18:03,581 | INFO     | all payload control threads have been joined
[2026-02-08 14:18:20] 2026-02-08 13:18:03,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 14:18:20] 2026-02-08 13:18:03,748 | INFO     | aborting loop
[2026-02-08 14:18:20] 2026-02-08 13:18:04,046 | INFO     | [job] retrieve thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,046 | INFO     | [job] queue monitor thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,139 | INFO     | [payload] validate_post thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,228 | INFO     | all job control threads have been joined
[2026-02-08 14:18:20] 2026-02-08 13:18:04,327 | INFO     | [data] control thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,360 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 14:18:20] 2026-02-08 13:18:04,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 14:18:20] 2026-02-08 13:18:04,586 | INFO     | [payload] control thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,753 | INFO     | [job] job monitor thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,758 | INFO     | [payload] failed_post thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,926 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:04,953 | INFO     | [job] validate thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:05,015 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:05,101 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:05,114 | INFO     | [data] copytool_in thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:05,234 | INFO     | [job] control thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:06,363 | INFO     | [data] copytool_out thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:08,390 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:10,477 | INFO     | [monitor] cgroup control has ended
[2026-02-08 14:18:20] 2026-02-08 13:18:13,566 | INFO     | job.realtimelogging is not enabled
[2026-02-08 14:18:20] 2026-02-08 13:18:14,571 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 14:18:20] 2026-02-08 13:18:15,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472961533760)>', '<ExcThread(monitor, started 140471728858880)>']
[2026-02-08 14:18:20] 2026-02-08 13:18:16,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 14:18:20] 2026-02-08 13:18:16,107 | INFO     | [monitor] control thread has ended
[2026-02-08 14:18:20] 2026-02-08 13:18:20,266 | INFO     | all workflow threads have been joined
[2026-02-08 14:18:20] 2026-02-08 13:18:20,266 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 14:18:20] 2026-02-08 13:18:20,266 | INFO     | traces error code: 0
[2026-02-08 14:18:20] 2026-02-08 13:18:20,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 14:18:20] 2026-02-08 13:18:20,333 [wrapper] ==== pilot stdout END ====
[2026-02-08 14:18:20] 2026-02-08 13:18:20,337 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 14:18:20] 2026-02-08 13:18:20,341 [wrapper] pilotpid: 919839
[2026-02-08 14:18:20] 2026-02-08 13:18:20,345 [wrapper] Pilot exit status: 0
[2026-02-08 14:18:20] 2026-02-08 13:18:20,355 [wrapper] pandaids: 7006627629
[2026-02-08 14:18:20] 2026-02-08 13:18:20,381 [wrapper] cleanup supervisor_pilot  933968 919840
[2026-02-08 14:18:20] 2026-02-08 13:18:20,384 [wrapper] Test setup, not cleaning
[2026-02-08 14:18:20] 2026-02-08 13:18:20,388 [wrapper] apfmon messages muted
[2026-02-08 14:18:20] 2026-02-08 13:18:20,392 [wrapper] ==== wrapper stdout END ====
[2026-02-08 14:18:20] 2026-02-08 13:18:20,395 [wrapper] ==== wrapper stderr END ====
[2026-02-08 14:18:20]  *** Error codes and diagnostics ***
[2026-02-08 14:18:20]     "exeErrorCode": 0,
[2026-02-08 14:18:20]     "exeErrorDiag": "",
[2026-02-08 14:18:20]     "pilotErrorCode": 0,
[2026-02-08 14:18:20]     "pilotErrorDiag": "",
[2026-02-08 14:18:20]  *** Listing of results directory ***
[2026-02-08 14:18:20] total 673092
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc    584627 Feb  7 19:32 pilot3.tar.gz
[2026-02-08 14:18:20] -rwx------ 1 boinc boinc     36322 Feb  7 19:33 runpilot2-wrapper.sh
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc      5111 Feb  7 19:34 queuedata.json
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc       100 Feb  8 13:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 14:18:20] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 13:03 run_atlas
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc       105 Feb  8 13:03 job.xml
[2026-02-08 14:18:20] -rw-r--r-- 2 boinc boinc 501868360 Feb  8 13:03 EVNT.48317929._000273.pool.root.1
[2026-02-08 14:18:20] -rw-r--r-- 2 boinc boinc    597950 Feb  8 13:03 input.tar.gz
[2026-02-08 14:18:20] -rw-r--r-- 2 boinc boinc     15845 Feb  8 13:03 start_atlas.sh
[2026-02-08 14:18:20] drwxrwx--x 2 boinc boinc      4096 Feb  8 13:03 shared
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc         0 Feb  8 13:03 boinc_setup_complete
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc      6371 Feb  8 13:03 init_data.xml
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc         0 Feb  8 13:03 boinc_lockfile
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc      2513 Feb  8 13:03 pandaJob.out
[2026-02-08 14:18:20] -rw------- 1 boinc boinc   1009518 Feb  8 13:04 agis_schedconf.cvmfs.json
[2026-02-08 14:18:20] -rw------- 1 boinc boinc   1513088 Feb  8 13:04 agis_ddmendpoints.agis.ALL.json
[2026-02-08 14:18:20] -rw------- 1 boinc boinc       430 Feb  8 13:04 workernode_map.json
[2026-02-08 14:18:20] drwx------ 5 boinc boinc      4096 Feb  8 13:04 pilot3
[2026-02-08 14:18:20] -rw------- 1 boinc boinc        95 Feb  8 14:17 pilot_heartbeat.json
[2026-02-08 14:18:20] -rw------- 1 boinc boinc 181569305 Feb  8 14:17 HITS.48317931._018293.pool.root.1
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc       530 Feb  8 14:17 boinc_task_state.xml
[2026-02-08 14:18:20] -rw------- 1 boinc boinc      1025 Feb  8 14:17 memory_monitor_summary.json
[2026-02-08 14:18:20] -rw------- 1 boinc boinc    285153 Feb  8 14:17 log.48317931._018293.job.log.tgz.1
[2026-02-08 14:18:20] -rw------- 1 boinc boinc      6330 Feb  8 14:18 heartbeat.json
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc        27 Feb  8 14:18 wrapper_checkpoint.txt
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc      8192 Feb  8 14:18 boinc_mmap_file
[2026-02-08 14:18:20] -rw------- 1 boinc boinc      4624 Feb  8 14:18 pilotlog.txt
[2026-02-08 14:18:20] -rw------- 1 boinc boinc    653662 Feb  8 14:18 log.48317931._018293.job.log.1
[2026-02-08 14:18:20] -rw------- 1 boinc boinc       357 Feb  8 14:18 output.list
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc       620 Feb  8 14:18 runtime_log
[2026-02-08 14:18:20] -rw------- 1 boinc boinc    952320 Feb  8 14:18 result.tar.gz
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc      8911 Feb  8 14:18 runtime_log.err
[2026-02-08 14:18:20] -rw------- 1 boinc boinc       660 Feb  8 14:18 p2PNDmiI288nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJnbKDmOgQain.diag
[2026-02-08 14:18:20] -rw-r--r-- 1 boinc boinc     12455 Feb  8 14:18 stderr.txt
[2026-02-08 14:18:20] HITS file was successfully produced:
[2026-02-08 14:18:20] -rw------- 1 boinc boinc 181569305 Feb  8 14:17 shared/HITS.pool.root.1
[2026-02-08 14:18:20]  *** Contents of shared directory: ***
[2026-02-08 14:18:20] total 668964
[2026-02-08 14:18:20] -rw-r--r-- 2 boinc boinc 501868360 Feb  8 13:03 ATLAS.root_0
[2026-02-08 14:18:20] -rw-r--r-- 2 boinc boinc    597950 Feb  8 13:03 input.tar.gz
[2026-02-08 14:18:20] -rw-r--r-- 2 boinc boinc     15845 Feb  8 13:03 start_atlas.sh
[2026-02-08 14:18:20] -rw------- 1 boinc boinc 181569305 Feb  8 14:17 HITS.pool.root.1
[2026-02-08 14:18:20] -rw------- 1 boinc boinc    952320 Feb  8 14:18 result.tar.gz
14:18:22 (915718): run_atlas exited; CPU time 16692.547203
14:18:22 (915718): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN