Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:01:05 (26210): wrapper (7.7.26015): starting
03:01:05 (26210): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 03:01:05] Arguments: --nthreads 8
[2026-02-08 03:01:05] Threads: 8
[2026-02-08 03:01:05] Checking for CVMFS
[2026-02-08 03:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 03:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 03:01:05] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 03:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 03:01:05] 2.11.0.0 4324 171428 92272 156002 1 188 2174496 4096000 1834 130560 6 13727241 99.523 12683542 535 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-08 03:01:05] CVMFS is ok
[2026-02-08 03:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 03:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 03:01:05] Further information can be found at the LHC@home message board.
[2026-02-08 03:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 03:01:05] Checking for apptainer binary...
[2026-02-08 03:01:05] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-08 03:01:05] apptainer is not installed, using version from CVMFS
[2026-02-08 03:01:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 03:01:05] WARNING: Environment variable TMPDIR already has value [/tmp/job_11082556/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node291
[2026-02-08 03:01:05] apptainer works
[2026-02-08 03:01:05] Set ATHENA_PROC_NUMBER=8
[2026-02-08 03:01:05] Set ATHENA_CORE_NUMBER=8
[2026-02-08 03:01:05] Starting ATLAS job with PandaID=6986360376
[2026-02-08 03:01:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11082556/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 03:56:25]  *** The last 200 lines of the pilot log: ***
[2026-02-08 03:56:25]  guid=4781a478-42d2-4e5d-a15c-5ea080ff3e57
[2026-02-08 03:56:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-08 03:56:25]  is_altstaged=None
[2026-02-08 03:56:25]  is_tar=False
[2026-02-08 03:56:25]  lfn=log.48318026._001793.job.log.tgz.1
[2026-02-08 03:56:25]  mtime=0
[2026-02-08 03:56:25]  protocol_id=None
[2026-02-08 03:56:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 03:56:25]  replicas=None
[2026-02-08 03:56:25]  scope=mc23_13p6TeV
[2026-02-08 03:56:25]  status=None
[2026-02-08 03:56:25]  status_code=0
[2026-02-08 03:56:25]  storage_token=
[2026-02-08 03:56:25]  surl=/tmp/job_11082556/atlas/pilot/slots/0/PanDA_Pilot-6986360376/log.48318026._001793.job.log.tgz.1
[2026-02-08 03:56:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/8e/log.48318026._001793.job.log.tgz.1
[2026-02-08 03:56:25]  workdir=None
[2026-02-08 03:56:25] ]
[2026-02-08 03:56:25] 2026-02-08 02:55:49,106 | INFO     | transferring file log.48318026._001793.job.log.tgz.1 from /tmp/job_11082556/atlas/pilot/slots/0/PanDA_Pilot-6986360376/log.48318026._001793.job.log.tgz.1 to /tmp/j
[2026-02-08 03:56:25] 2026-02-08 02:55:49,106 | INFO     | executing command: /usr/bin/env mv /tmp/job_11082556/atlas/pilot/slots/0/PanDA_Pilot-6986360376/log.48318026._001793.job.log.tgz.1 /tmp/job_11082556/atlas/pilot/sl
[2026-02-08 03:56:25] 2026-02-08 02:55:49,115 | INFO     | adding to output.list: log.48318026._001793.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/8e/log.48318026._001793.job.log.tg
[2026-02-08 03:56:25] 2026-02-08 02:55:49,115 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 03:56:25] 2026-02-08 02:55:49,115 | INFO     | summary of transferred files:
[2026-02-08 03:56:25] 2026-02-08 02:55:49,115 | INFO     |  -- lfn=log.48318026._001793.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 03:56:25] 2026-02-08 02:55:49,116 | INFO     | stage-out finished correctly
[2026-02-08 03:56:25] 2026-02-08 02:55:49,703 | INFO     | time since job start (3277s) is within the limit (349056.0s)
[2026-02-08 03:56:25] 2026-02-08 02:55:49,703 | INFO     | 3280s have passed since pilot start - server update state is 'RUNNING'
[2026-02-08 03:56:25] 2026-02-08 02:55:50,331 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 03:56:25] 2026-02-08 02:55:51,433 | INFO     | monitor loop #251: job 0:6986360376 is in state 'finished'
[2026-02-08 03:56:25] 2026-02-08 02:55:51,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 03:56:25] 2026-02-08 02:55:51,709 | INFO     | time since job start (3279s) is within the limit (349056.0s)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,964 | INFO     | job 6986360376 has state=finished
[2026-02-08 03:56:25] 2026-02-08 02:55:52,965 | INFO     | preparing for final server update for job 6986360376 in state='finished'
[2026-02-08 03:56:25] 2026-02-08 02:55:52,965 | INFO     | reading metadata from: /tmp/job_11082556/atlas/pilot/slots/0/PanDA_Pilot-6986360376/jobReport.json
[2026-02-08 03:56:25] 2026-02-08 02:55:52,966 | INFO     | added worker_node to metadata from /tmp/job_11082556/atlas/pilot/slots/0/workernode_map.json
[2026-02-08 03:56:25] 2026-02-08 02:55:52,966 | INFO     | this job has now completed (state=finished)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,966 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,967 | INFO     | log transfer has been attempted: DONE
[2026-02-08 03:56:25] 2026-02-08 02:55:52,967 | INFO     | job 6986360376 has finished - writing final server update
[2026-02-08 03:56:25] 2026-02-08 02:55:52,967 | INFO     | total number of processed events: 400 (read)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,996 | INFO     | using path: /tmp/job_11082556/atlas/pilot/slots/0/PanDA_Pilot-6986360376/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,996 | INFO     | extracted standard info from prmon json
[2026-02-08 03:56:25] 2026-02-08 02:55:52,996 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 03:56:25] 2026-02-08 02:55:52,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 03:56:25] 2026-02-08 02:55:52,997 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 03:56:25] 2026-02-08 02:55:52,997 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 03:56:25] 2026-02-08 02:55:52,997 | INFO     | fitting pss+swap vs Time
[2026-02-08 03:56:25] 2026-02-08 02:55:52,997 | INFO     | sum of square deviations: 32179208.0
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | sum of deviations: -776721052.0000001
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | mean x: 1770517797.0
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | mean y: 2550766.936170213
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | intersect: 42738172037.3715
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | chi2: 0.009444448676393996
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | current memory leak: -24.14 B/s (using 47 data points, chi2=0.01)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | could have reported an average CPU frequency of 2594 MHz (5 samples)
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | ..............................
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . Timing measurements:
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . get job = 0 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . initial setup = 2 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . payload setup = 2 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . stage-in = 0 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . payload execution = 3259 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . stage-out = 0 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | . log creation = 0 s
[2026-02-08 03:56:25] 2026-02-08 02:55:52,998 | INFO     | ..............................
[2026-02-08 03:56:25] 2026-02-08 02:55:53,377 | INFO     | 
[2026-02-08 03:56:25] 2026-02-08 02:55:53,377 | INFO     | job summary report
[2026-02-08 03:56:25] 2026-02-08 02:55:53,377 | INFO     | --------------------------------------------------
[2026-02-08 03:56:25] 2026-02-08 02:55:53,377 | INFO     | PanDA job id: 6986360376
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | task id: 48318026
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | errors: (none)
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | pilot state: finished 
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | transexitcode: 0
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | exeerrorcode: 0
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | exeerrordiag: 
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | exitcode: 0
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | exitmsg: OK
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | cpuconsumptiontime: 22315 s
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | nevents: 400
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | neventsw: 0
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | pid: 2218
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | pgrp: 2218
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | corecount: 8
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | event service: False
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | sizes: {0: 2261927, 1: 2283233, 11: 2283233, 3265: 2308832, 3266: 2317860, 3267: 2317916, 3270: 2318270}
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | --------------------------------------------------
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | 
[2026-02-08 03:56:25] 2026-02-08 02:55:53,378 | INFO     | executing command: ls -lF /tmp/job_11082556/atlas/pilot/slots/0
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | job 6986360376 has completed (purged errors)
[2026-02-08 03:56:25] 2026-02-08 02:55:53,390 | INFO     | overall cleanup function is called
[2026-02-08 03:56:25] 2026-02-08 02:55:54,396 | INFO     | --- collectZombieJob: --- 10, [2218]
[2026-02-08 03:56:25] 2026-02-08 02:55:54,396 | INFO     | zombie collector waiting for pid 2218
[2026-02-08 03:56:25] 2026-02-08 02:55:54,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 03:56:25] 2026-02-08 02:55:54,396 | INFO     | collected zombie processes
[2026-02-08 03:56:25] 2026-02-08 02:55:54,396 | INFO     | will attempt to kill all subprocesses of pid=2218
[2026-02-08 03:56:25] 2026-02-08 02:55:54,494 | INFO     | process IDs to be killed: [2218] (in reverse order)
[2026-02-08 03:56:25] 2026-02-08 02:55:54,530 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 03:56:25] 2026-02-08 02:55:54,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 03:56:25] 2026-02-08 02:55:54,534 | INFO     | did not find any defunct processes belonging to 2218
[2026-02-08 03:56:25] 2026-02-08 02:55:54,537 | INFO     | did not find any defunct processes belonging to 2218
[2026-02-08 03:56:25] 2026-02-08 02:55:54,537 | INFO     | ready for new job
[2026-02-08 03:56:25] 2026-02-08 02:55:54,537 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 03:56:25] 2026-02-08 02:55:54,538 | INFO     | **************************************
[2026-02-08 03:56:25] 2026-02-08 02:55:54,538 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-08 03:56:25] 2026-02-08 02:55:54,538 | INFO     | **************************************
[2026-02-08 03:56:25] 2026-02-08 02:55:54,538 | INFO     | 
[2026-02-08 03:56:25] 2026-02-08 02:55:54,551 | INFO     | architecture information:
[2026-02-08 03:56:25] 2026-02-08 02:55:54,551 | INFO     | executing command: cat /etc/os-release
[2026-02-08 03:56:25] 2026-02-08 02:55:54,559 | INFO     | cat /etc/os-release:
[2026-02-08 03:56:25] NAME="CentOS Linux"
[2026-02-08 03:56:25] VERSION="7 (Core)"
[2026-02-08 03:56:25] ID="centos"
[2026-02-08 03:56:25] ID_LIKE="rhel fedora"
[2026-02-08 03:56:25] VERSION_ID="7"
[2026-02-08 03:56:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 03:56:25] ANSI_COLOR="0;31"
[2026-02-08 03:56:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 03:56:25] HOME_URL="https://www.centos.org/"
[2026-02-08 03:56:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 03:56:25] 
[2026-02-08 03:56:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 03:56:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 03:56:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 03:56:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 03:56:25] 
[2026-02-08 03:56:25] 2026-02-08 02:55:54,559 | INFO     | **************************************
[2026-02-08 03:56:25] 2026-02-08 02:55:55,062 | INFO     | executing command: df -mP /tmp/job_11082556/atlas/pilot/slots/0
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | INFO     | sufficient remaining disk space (224032456704 B)
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | INFO     | update_server=False
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 03:56:25] 2026-02-08 02:55:55,069 | INFO     | aborting loop
[2026-02-08 03:56:25] 2026-02-08 02:55:55,390 | INFO     | all payload control threads have been joined
[2026-02-08 03:56:25] 2026-02-08 02:55:56,053 | INFO     | all data control threads have been joined
[2026-02-08 03:56:25] 2026-02-08 02:55:56,074 | INFO     | [job] retrieve thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:56,074 | INFO     | [job] job monitor thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:56,391 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 03:56:25] 2026-02-08 02:55:56,395 | INFO     | [payload] control thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:56,511 | INFO     | all job control threads have been joined
[2026-02-08 03:56:25] 2026-02-08 02:55:56,530 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:56,994 | INFO     | [payload] failed_post thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,058 | INFO     | [data] control thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,074 | INFO     | [data] copytool_out thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,173 | INFO     | [job] validate thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,318 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,353 | INFO     | [data] copytool_in thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,370 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,514 | INFO     | [job] control thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:57,539 | INFO     | [payload] validate_post thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:55:58,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 03:56:25] 2026-02-08 02:55:59,064 | INFO     | [job] queue monitor thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:56:00,392 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:56:05,953 | INFO     | job.realtimelogging is not enabled
[2026-02-08 03:56:25] 2026-02-08 02:56:06,958 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 03:56:25] 2026-02-08 02:56:17,153 | INFO     | [monitor] cgroup control has ended
[2026-02-08 03:56:25] 2026-02-08 02:56:18,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-08 03:56:25] 2026-02-08 02:56:23,615 | INFO     | all workflow threads have been joined
[2026-02-08 03:56:25] 2026-02-08 02:56:23,615 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 03:56:25] 2026-02-08 02:56:23,616 | INFO     | traces error code: 0
[2026-02-08 03:56:25] 2026-02-08 02:56:23,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | INFO     | PID=29949 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | INFO     | .. there are 3 such processes running
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 03:56:25] 2026-02-08 02:56:24,890 | INFO     | [monitor] control thread has ended
[2026-02-08 03:56:25] 2026-02-08 02:56:24,975 [wrapper] ==== pilot stdout END ====
[2026-02-08 03:56:25] 2026-02-08 02:56:24,977 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 03:56:25] 2026-02-08 02:56:24,978 [wrapper] pilotpid: 29949
[2026-02-08 03:56:25] 2026-02-08 02:56:24,979 [wrapper] Pilot exit status: 0
[2026-02-08 03:56:25] 2026-02-08 02:56:24,983 [wrapper] pandaids: 6986360376
[2026-02-08 03:56:25] 2026-02-08 02:56:25,006 [wrapper] cleanup supervisor_pilot 29347 29950
[2026-02-08 03:56:25] 2026-02-08 02:56:25,007 [wrapper] Test setup, not cleaning
[2026-02-08 03:56:25] 2026-02-08 02:56:25,008 [wrapper] apfmon messages muted
[2026-02-08 03:56:25] 2026-02-08 02:56:25,009 [wrapper] ==== wrapper stdout END ====
[2026-02-08 03:56:25] 2026-02-08 02:56:25,010 [wrapper] ==== wrapper stderr END ====
[2026-02-08 03:56:25]  *** Error codes and diagnostics ***
[2026-02-08 03:56:25]     "exeErrorCode": 0,
[2026-02-08 03:56:25]     "exeErrorDiag": "",
[2026-02-08 03:56:25]     "pilotErrorCode": 0,
[2026-02-08 03:56:25]     "pilotErrorDiag": "",
[2026-02-08 03:56:25]  *** Listing of results directory ***
[2026-02-08 03:56:25] total 724984
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user    584422 Jan 30 17:41 pilot3.tar.gz
[2026-02-08 03:56:25] -rwx------ 1 mf493845 unix-user     36322 Jan 30 17:43 runpilot2-wrapper.sh
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      5111 Jan 30 17:44 queuedata.json
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       100 Feb  8 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 03:56:25] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  8 00:45 run_atlas
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       105 Feb  8 00:45 job.xml
[2026-02-08 03:56:25] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 03:01 start_atlas.sh
[2026-02-08 03:56:25] drwxrwx--x 2 mf493845 unix-user       100 Feb  8 03:01 shared
[2026-02-08 03:56:25] -rw-r--r-- 2 mf493845 unix-user    597771 Feb  8 03:01 input.tar.gz
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      6390 Feb  8 03:01 init_data.xml
[2026-02-08 03:56:25] -rw-r--r-- 2 mf493845 unix-user 533222697 Feb  8 03:01 EVNT.48318024._000036.pool.root.1
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user         0 Feb  8 03:01 boinc_setup_complete
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      8192 Feb  8 03:01 boinc_mmap_file
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user         0 Feb  8 03:01 boinc_lockfile
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      2523 Feb  8 03:01 pandaJob.out
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user   1009510 Feb  8 03:01 agis_schedconf.cvmfs.json
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user   1513088 Feb  8 03:01 agis_ddmendpoints.agis.ALL.json
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       413 Feb  8 03:01 workernode_map.json
[2026-02-08 03:56:25] drwx------ 5 mf493845 unix-user       440 Feb  8 03:01 pilot3
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user 203601973 Feb  8 03:55 HITS.48318026._001793.pool.root.1
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      1019 Feb  8 03:55 memory_monitor_summary.json
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user        95 Feb  8 03:55 pilot_heartbeat.json
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user    313177 Feb  8 03:55 log.48318026._001793.job.log.tgz.1
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      6308 Feb  8 03:55 heartbeat.json
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       820 Feb  8 03:56 pilotlog.txt
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user    514025 Feb  8 03:56 log.48318026._001793.job.log.1
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       357 Feb  8 03:56 output.list
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       620 Feb  8 03:56 runtime_log
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user    839680 Feb  8 03:56 result.tar.gz
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user      9219 Feb  8 03:56 runtime_log.err
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user       642 Feb  8 03:56 nPpNDmcl658n9Rq4apOajLDm4fhM0noT9bVooX4SDm4TLKDmh6lcNn.diag
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user     21874 Feb  8 03:56 stderr.txt
[2026-02-08 03:56:25] HITS file was successfully produced:
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user 203601973 Feb  8 03:55 shared/HITS.pool.root.1
[2026-02-08 03:56:25]  *** Contents of shared directory: ***
[2026-02-08 03:56:25] total 720980
[2026-02-08 03:56:25] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 03:01 start_atlas.sh
[2026-02-08 03:56:25] -rw-r--r-- 2 mf493845 unix-user    597771 Feb  8 03:01 input.tar.gz
[2026-02-08 03:56:25] -rw-r--r-- 2 mf493845 unix-user 533222697 Feb  8 03:01 ATLAS.root_0
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user 203601973 Feb  8 03:55 HITS.pool.root.1
[2026-02-08 03:56:25] -rw------- 1 mf493845 unix-user    839680 Feb  8 03:56 result.tar.gz
03:56:26 (26210): run_atlas exited; CPU time 22354.993297
03:56:26 (26210): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN