Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:42:38 (876883): wrapper (7.7.26015): starting
10:42:38 (876883): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 10:42:38] Arguments: --nthreads 4
[2026-02-08 10:42:38] Threads: 4
[2026-02-08 10:42:38] Checking for CVMFS
[2026-02-08 10:42:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 10:42:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 10:42:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 10:42:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 10:42:39] 2.9.2.0 8228 3137 91640 156014 1 50 31376868 36864000 0 130560 0 1516854 99.985 117101 10406 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 10:42:39] CVMFS is ok
[2026-02-08 10:42:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 10:42:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 10:42:39] Further information can be found at the LHC@home message board.
[2026-02-08 10:42:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 10:42:39] Checking for apptainer binary...
[2026-02-08 10:42:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 10:42:39] Running /usr/bin/apptainer --version
[2026-02-08 10:42:39] apptainer version 1.4.1-1.1
[2026-02-08 10:42:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 10:42:39] atlasA237
[2026-02-08 10:42:39] apptainer works
[2026-02-08 10:42:39] Set ATHENA_PROC_NUMBER=4
[2026-02-08 10:42:39] Set ATHENA_CORE_NUMBER=4
[2026-02-08 10:42:39] Starting ATLAS job with PandaID=7000833932
[2026-02-08 10:42:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 11:52:02]  *** The last 200 lines of the pilot log: ***
[2026-02-08 11:52:02] 2026-02-08 10:50:59,856 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 11:52:02] 2026-02-08 10:50:59,856 | INFO     | job 7000833932 has completed (purged errors)
[2026-02-08 11:52:02] 2026-02-08 10:50:59,856 | INFO     | overall cleanup function is called
[2026-02-08 11:52:02] 2026-02-08 10:51:00,863 | INFO     | --- collectZombieJob: --- 10, [885532]
[2026-02-08 11:52:02] 2026-02-08 10:51:00,863 | INFO     | zombie collector waiting for pid 885532
[2026-02-08 11:52:02] 2026-02-08 10:51:00,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 11:52:02] 2026-02-08 10:51:00,863 | INFO     | collected zombie processes
[2026-02-08 11:52:02] 2026-02-08 10:51:00,863 | INFO     | will attempt to kill all subprocesses of pid=885532
[2026-02-08 11:52:02] 2026-02-08 10:51:00,927 | INFO     | process IDs to be killed: [885532] (in reverse order)
[2026-02-08 11:52:02] 2026-02-08 10:51:00,967 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 11:52:02] 2026-02-08 10:51:00,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 11:52:02] 2026-02-08 10:51:00,970 | INFO     | did not find any defunct processes belonging to 885532
[2026-02-08 11:52:02] 2026-02-08 10:51:00,972 | INFO     | did not find any defunct processes belonging to 885532
[2026-02-08 11:52:02] 2026-02-08 10:51:00,972 | INFO     | ready for new job
[2026-02-08 11:52:02] 2026-02-08 10:51:00,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 11:52:02] 2026-02-08 10:51:00,973 | INFO     | **************************************
[2026-02-08 11:52:02] 2026-02-08 10:51:00,973 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 11:52:02] 2026-02-08 10:51:00,973 | INFO     | **************************************
[2026-02-08 11:52:02] 2026-02-08 10:51:00,973 | INFO     | 
[2026-02-08 11:52:02] 2026-02-08 10:51:00,974 | INFO     | architecture information:
[2026-02-08 11:52:02] 2026-02-08 10:51:00,974 | INFO     | executing command: cat /etc/os-release
[2026-02-08 11:52:02] 2026-02-08 10:51:00,987 | INFO     | cat /etc/os-release:
[2026-02-08 11:52:02] NAME="CentOS Linux"
[2026-02-08 11:52:02] VERSION="7 (Core)"
[2026-02-08 11:52:02] ID="centos"
[2026-02-08 11:52:02] ID_LIKE="rhel fedora"
[2026-02-08 11:52:02] VERSION_ID="7"
[2026-02-08 11:52:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 11:52:02] ANSI_COLOR="0;31"
[2026-02-08 11:52:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 11:52:02] HOME_URL="https://www.centos.org/"
[2026-02-08 11:52:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 11:52:02] 
[2026-02-08 11:52:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 11:52:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 11:52:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 11:52:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 11:52:02] 
[2026-02-08 11:52:02] 2026-02-08 10:51:00,987 | INFO     | **************************************
[2026-02-08 11:52:02] 2026-02-08 10:51:01,490 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | INFO     | sufficient remaining disk space (323632496640 B)
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | INFO     | update_server=False
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 11:52:02] 2026-02-08 10:51:01,504 | INFO     | aborting loop
[2026-02-08 11:52:02] 2026-02-08 10:51:01,515 | INFO     | all data control threads have been joined
[2026-02-08 11:52:02] 2026-02-08 10:51:01,746 | INFO     | all payload control threads have been joined
[2026-02-08 11:52:02] 2026-02-08 10:51:02,136 | INFO     | all job control threads have been joined
[2026-02-08 11:52:02] 2026-02-08 10:51:02,199 | INFO     | job.realtimelogging is not enabled
[2026-02-08 11:52:02] 2026-02-08 10:51:02,509 | INFO     | [job] retrieve thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:02,510 | INFO     | [job] job monitor thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:02,520 | INFO     | [data] control thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:02,550 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:02,719 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 11:52:02] 2026-02-08 10:51:02,745 | INFO     | [data] copytool_in thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:02,751 | INFO     | [payload] control thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:02,767 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:03,020 | INFO     | [payload] failed_post thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:03,142 | INFO     | [job] control thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:03,205 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:03,576 | INFO     | [payload] validate_post thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:03,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 11:52:02] 2026-02-08 10:51:03,864 | INFO     | [job] validate thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:04,002 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:04,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 11:52:02] 2026-02-08 10:51:04,725 | INFO     | [data] copytool_out thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:05,451 | INFO     | [job] queue monitor thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:07,737 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 11:52:02] 2026-02-08 10:51:32,316 | INFO     | PID=881001 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 11:52:02] 2026-02-08 10:51:32,316 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 11:52:02] 2026-02-08 10:51:32,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 11:52:02] 2026-02-08 10:51:32,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 11:52:02] 2026-02-08 10:51:56,383 | INFO     | [monitor] cgroup control has ended
[2026-02-08 11:52:02] 2026-02-08 10:51:57,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139764765214528)>', '<ExcThread(monitor, started 139764091033344)>']
[2026-02-08 11:52:02] 2026-02-08 10:51:57,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 11:52:02] 2026-02-08 10:51:57,439 | INFO     | [monitor] control thread has ended
[2026-02-08 11:52:02] 2026-02-08 10:52:02,041 | INFO     | all workflow threads have been joined
[2026-02-08 11:52:02] 2026-02-08 10:52:02,041 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 11:52:02] 2026-02-08 10:52:02,041 | INFO     | traces error code: 0
[2026-02-08 11:52:02] 2026-02-08 10:52:02,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 11:52:02] 2026-02-08 10:52:02,110 [wrapper] ==== pilot stdout END ====
[2026-02-08 11:52:02] 2026-02-08 10:52:02,114 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 11:52:02] 2026-02-08 10:52:02,117 [wrapper] pilotpid: 881001
[2026-02-08 11:52:02] 2026-02-08 10:52:02,121 [wrapper] Pilot exit status: 0
[2026-02-08 11:52:02] 2026-02-08 10:52:02,132 [wrapper] pandaids: 7000833932
[2026-02-08 11:52:02] 2026-02-08 10:52:02,159 [wrapper] cleanup supervisor_pilot  895244 881002
[2026-02-08 11:52:02] 2026-02-08 10:52:02,163 [wrapper] Test setup, not cleaning
[2026-02-08 11:52:02] 2026-02-08 10:52:02,166 [wrapper] apfmon messages muted
[2026-02-08 11:52:02] 2026-02-08 10:52:02,170 [wrapper] ==== wrapper stdout END ====
[2026-02-08 11:52:02] 2026-02-08 10:52:02,174 [wrapper] ==== wrapper stderr END ====
[2026-02-08 11:52:02]  *** Error codes and diagnostics ***
[2026-02-08 11:52:02]     "exeErrorCode": 0,
[2026-02-08 11:52:02]     "exeErrorDiag": "",
[2026-02-08 11:52:02]     "pilotErrorCode": 0,
[2026-02-08 11:52:02]     "pilotErrorDiag": "",
[2026-02-08 11:52:02]  *** Listing of results directory ***
[2026-02-08 11:52:02] total 666156
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc    584627 Feb  7 16:47 pilot3.tar.gz
[2026-02-08 11:52:02] -rwx------ 1 boinc boinc     36322 Feb  7 16:49 runpilot2-wrapper.sh
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc      5111 Feb  7 16:50 queuedata.json
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc       100 Feb  8 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 11:52:02] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 10:42 run_atlas
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc       105 Feb  8 10:42 job.xml
[2026-02-08 11:52:02] -rw-r--r-- 2 boinc boinc 497428838 Feb  8 10:42 EVNT.48442027._000072.pool.root.1
[2026-02-08 11:52:02] -rw-r--r-- 2 boinc boinc    597952 Feb  8 10:42 input.tar.gz
[2026-02-08 11:52:02] -rw-r--r-- 2 boinc boinc     15845 Feb  8 10:42 start_atlas.sh
[2026-02-08 11:52:02] drwxrwx--x 2 boinc boinc      4096 Feb  8 10:42 shared
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc         0 Feb  8 10:42 boinc_setup_complete
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc      6371 Feb  8 10:42 init_data.xml
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc         0 Feb  8 10:42 boinc_lockfile
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc      2527 Feb  8 10:42 pandaJob.out
[2026-02-08 11:52:02] -rw------- 1 boinc boinc   1009518 Feb  8 10:42 agis_schedconf.cvmfs.json
[2026-02-08 11:52:02] -rw------- 1 boinc boinc   1513088 Feb  8 10:42 agis_ddmendpoints.agis.ALL.json
[2026-02-08 11:52:02] -rw------- 1 boinc boinc       424 Feb  8 10:42 workernode_map.json
[2026-02-08 11:52:02] drwx------ 5 boinc boinc      4096 Feb  8 10:42 pilot3
[2026-02-08 11:52:02] -rw------- 1 boinc boinc 179082271 Feb  8 11:50 HITS.48442031._003601.pool.root.1
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc       530 Feb  8 11:50 boinc_task_state.xml
[2026-02-08 11:52:02] -rw------- 1 boinc boinc      1025 Feb  8 11:50 memory_monitor_summary.json
[2026-02-08 11:52:02] -rw------- 1 boinc boinc    241979 Feb  8 11:50 log.48442031._003601.job.log.tgz.1
[2026-02-08 11:52:02] -rw------- 1 boinc boinc      6321 Feb  8 11:50 heartbeat.json
[2026-02-08 11:52:02] -rw------- 1 boinc boinc        95 Feb  8 11:51 pilot_heartbeat.json
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc        27 Feb  8 11:51 wrapper_checkpoint.txt
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc      8192 Feb  8 11:51 boinc_mmap_file
[2026-02-08 11:52:02] -rw------- 1 boinc boinc      4819 Feb  8 11:52 pilotlog.txt
[2026-02-08 11:52:02] -rw------- 1 boinc boinc    605911 Feb  8 11:52 log.48442031._003601.job.log.1
[2026-02-08 11:52:02] -rw------- 1 boinc boinc       357 Feb  8 11:52 output.list
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc       620 Feb  8 11:52 runtime_log
[2026-02-08 11:52:02] -rw------- 1 boinc boinc    870400 Feb  8 11:52 result.tar.gz
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc      8911 Feb  8 11:52 runtime_log.err
[2026-02-08 11:52:02] -rw------- 1 boinc boinc       660 Feb  8 11:52 5b9MDmtjz88n9Rq4apOajLDm4fhM0noT9bVooX4SDmMDbKDmUFpWwm.diag
[2026-02-08 11:52:02] -rw-r--r-- 1 boinc boinc     10989 Feb  8 11:52 stderr.txt
[2026-02-08 11:52:02] HITS file was successfully produced:
[2026-02-08 11:52:02] -rw------- 1 boinc boinc 179082271 Feb  8 11:50 shared/HITS.pool.root.1
[2026-02-08 11:52:02]  *** Contents of shared directory: ***
[2026-02-08 11:52:02] total 662120
[2026-02-08 11:52:02] -rw-r--r-- 2 boinc boinc 497428838 Feb  8 10:42 ATLAS.root_0
[2026-02-08 11:52:02] -rw-r--r-- 2 boinc boinc    597952 Feb  8 10:42 input.tar.gz
[2026-02-08 11:52:02] -rw-r--r-- 2 boinc boinc     15845 Feb  8 10:42 start_atlas.sh
[2026-02-08 11:52:02] -rw------- 1 boinc boinc 179082271 Feb  8 11:50 HITS.pool.root.1
[2026-02-08 11:52:02] -rw------- 1 boinc boinc    870400 Feb  8 11:52 result.tar.gz
11:52:03 (876883): run_atlas exited; CPU time 15413.762927
11:52:03 (876883): called boinc_finish(0)

</stderr_txt>
]]>

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