Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
03:19:59 (2012638): wrapper (7.7.26015): starting
03:19:59 (2012638): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 03:19:59] Arguments: --nthreads 12
[2026-02-08 03:19:59] Threads: 12
[2026-02-08 03:19:59] Checking for CVMFS
[2026-02-08 03:19:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 03:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 03:20:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 03:20:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 03:20:00] 2.13.0.0 1982743 106 57220 156003 2 49 3422139 6144000 0 130560 0 89154 99.983 4457 1015 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-08 03:20:00] CVMFS is ok
[2026-02-08 03:20:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 03:20:00] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-08 03:20:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-08 03:20:00] Further information can be found at the LHC@home message board.
[2026-02-08 03:20:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 03:20:00] Checking for apptainer binary...
[2026-02-08 03:20:00] apptainer is not installed, using version from CVMFS
[2026-02-08 03:20:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 03:20:00] Debian-bookworm-latest-amd64-base
[2026-02-08 03:20:00] apptainer works
[2026-02-08 03:20:00] Set ATHENA_PROC_NUMBER=12
[2026-02-08 03:20:00] Set ATHENA_CORE_NUMBER=12
[2026-02-08 03:20:00] Starting ATLAS job with PandaID=7006748760
[2026-02-08 03:20:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 04:25:28]  *** The last 200 lines of the pilot log: ***
[2026-02-08 04:25:28]  lfn=log.48431096._008291.job.log.tgz.1
[2026-02-08 04:25:28]  mtime=0
[2026-02-08 04:25:28]  protocol_id=None
[2026-02-08 04:25:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 04:25:28]  replicas=None
[2026-02-08 04:25:28]  scope=mc23_13p6TeV
[2026-02-08 04:25:28]  status=None
[2026-02-08 04:25:28]  status_code=0
[2026-02-08 04:25:28]  storage_token=
[2026-02-08 04:25:28]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-7006748760/log.48431096._008291.job.log.tgz.1
[2026-02-08 04:25:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/3b/log.48431096._008291.job.log.tgz.1
[2026-02-08 04:25:28]  workdir=None
[2026-02-08 04:25:28] ]
[2026-02-08 04:25:28] 2026-02-08 03:24:44,099 | INFO     | transferring file log.48431096._008291.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-7006748760/log.48431096._008291.job.log.tgz.1 to /var/lib/boinc
[2026-02-08 04:25:28] 2026-02-08 03:24:44,100 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-7006748760/log.48431096._008291.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.484310
[2026-02-08 04:25:28] 2026-02-08 03:24:44,120 | INFO     | adding to output.list: log.48431096._008291.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/3b/log.48431096._008291.job.log.tg
[2026-02-08 04:25:28] 2026-02-08 03:24:44,120 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 04:25:28] 2026-02-08 03:24:44,120 | INFO     | summary of transferred files:
[2026-02-08 04:25:28] 2026-02-08 03:24:44,120 | INFO     |  -- lfn=log.48431096._008291.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 04:25:28] 2026-02-08 03:24:44,121 | INFO     | stage-out finished correctly
[2026-02-08 04:25:28] 2026-02-08 03:24:44,423 | INFO     | monitor loop #297: job 0:7006748760 is in state 'finished'
[2026-02-08 04:25:28] 2026-02-08 03:24:44,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 04:25:28] 2026-02-08 03:24:45,300 | INFO     | time since job start (3869s) is within the limit (349056.0s)
[2026-02-08 04:25:28] 2026-02-08 03:24:46,927 | INFO     | monitor loop #298: job 0:7006748760 is in state 'finished'
[2026-02-08 04:25:28] 2026-02-08 03:24:46,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 04:25:28] 2026-02-08 03:24:47,306 | INFO     | time since job start (3871s) is within the limit (349056.0s)
[2026-02-08 04:25:28] 2026-02-08 03:24:47,447 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 04:25:28] 2026-02-08 03:24:49,311 | INFO     | time since job start (3873s) is within the limit (349056.0s)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,430 | INFO     | monitor loop #299: job 0:7006748760 is in state 'finished'
[2026-02-08 04:25:28] 2026-02-08 03:24:49,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,613 | INFO     | job 7006748760 has state=finished
[2026-02-08 04:25:28] 2026-02-08 03:24:49,614 | INFO     | preparing for final server update for job 7006748760 in state='finished'
[2026-02-08 04:25:28] 2026-02-08 03:24:49,614 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7006748760/jobReport.json
[2026-02-08 04:25:28] 2026-02-08 03:24:49,616 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-02-08 04:25:28] 2026-02-08 03:24:49,616 | INFO     | this job has now completed (state=finished)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,616 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,616 | INFO     | log transfer has been attempted: DONE
[2026-02-08 04:25:28] 2026-02-08 03:24:49,616 | INFO     | job 7006748760 has finished - writing final server update
[2026-02-08 04:25:28] 2026-02-08 03:24:49,616 | INFO     | total number of processed events: 400 (read)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,619 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7006748760/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,620 | INFO     | extracted standard info from prmon json
[2026-02-08 04:25:28] 2026-02-08 03:24:49,620 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 04:25:28] 2026-02-08 03:24:49,620 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 04:25:28] 2026-02-08 03:24:49,620 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 04:25:28] 2026-02-08 03:24:49,620 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 04:25:28] 2026-02-08 03:24:49,621 | INFO     | fitting pss+swap vs Time
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | sum of square deviations: 57407588.0
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | sum of deviations: -6827511558.999999
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | mean x: 1770519246.0
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | mean y: 3148167.8947368423
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | intersect: 210571838451.43292
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | chi2: 0.10226944040017479
[2026-02-08 04:25:28] 2026-02-08 03:24:49,622 | INFO     | current memory leak: -118.93 B/s (using 57 data points, chi2=0.10)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | could have reported an average CPU frequency of 4059 MHz (6 samples)
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | ..............................
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . Timing measurements:
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . get job = 0 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . initial setup = 3 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . payload setup = 2 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . stage-in = 0 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . payload execution = 3848 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . stage-out = 0 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | . log creation = 0 s
[2026-02-08 04:25:28] 2026-02-08 03:24:49,623 | INFO     | ..............................
[2026-02-08 04:25:28] 2026-02-08 03:24:50,124 | INFO     | 
[2026-02-08 04:25:28] 2026-02-08 03:24:50,124 | INFO     | job summary report
[2026-02-08 04:25:28] 2026-02-08 03:24:50,124 | INFO     | --------------------------------------------------
[2026-02-08 04:25:28] 2026-02-08 03:24:50,124 | INFO     | PanDA job id: 7006748760
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | task id: 48431096
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | errors: (none)
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | pilot state: finished 
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | transexitcode: 0
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | exeerrorcode: 0
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | exeerrordiag: 
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | exitcode: 0
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | exitmsg: OK
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | cpuconsumptiontime: 42769 s
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | nevents: 400
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | neventsw: 0
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | pid: 2021473
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | pgrp: 2021473
[2026-02-08 04:25:28] 2026-02-08 03:24:50,125 | INFO     | corecount: 12
[2026-02-08 04:25:28] 2026-02-08 03:24:50,126 | INFO     | event service: False
[2026-02-08 04:25:28] 2026-02-08 03:24:50,126 | INFO     | sizes: {0: 2283090, 11: 2283090, 3854: 2309031, 3855: 2309030, 3857: 2318098, 3860: 2318154, 3862: 2318476}
[2026-02-08 04:25:28] 2026-02-08 03:24:50,126 | INFO     | --------------------------------------------------
[2026-02-08 04:25:28] 2026-02-08 03:24:50,126 | INFO     | 
[2026-02-08 04:25:28] 2026-02-08 03:24:50,126 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,144 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 04:25:28] 2026-02-08 03:24:50,145 | INFO     | job 7006748760 has completed (purged errors)
[2026-02-08 04:25:28] 2026-02-08 03:24:50,145 | INFO     | overall cleanup function is called
[2026-02-08 04:25:28] 2026-02-08 03:24:51,152 | INFO     | --- collectZombieJob: --- 10, [2021473]
[2026-02-08 04:25:28] 2026-02-08 03:24:51,152 | INFO     | zombie collector waiting for pid 2021473
[2026-02-08 04:25:28] 2026-02-08 03:24:51,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 04:25:28] 2026-02-08 03:24:51,152 | INFO     | collected zombie processes
[2026-02-08 04:25:28] 2026-02-08 03:24:51,152 | INFO     | will attempt to kill all subprocesses of pid=2021473
[2026-02-08 04:25:28] 2026-02-08 03:24:51,213 | INFO     | process IDs to be killed: [2021473] (in reverse order)
[2026-02-08 04:25:28] 2026-02-08 03:24:51,238 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 04:25:28] 2026-02-08 03:24:51,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 04:25:28] 2026-02-08 03:24:51,239 | INFO     | did not find any defunct processes belonging to 2021473
[2026-02-08 04:25:28] 2026-02-08 03:24:51,240 | INFO     | did not find any defunct processes belonging to 2021473
[2026-02-08 04:25:28] 2026-02-08 03:24:51,240 | INFO     | ready for new job
[2026-02-08 04:25:28] 2026-02-08 03:24:51,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 04:25:28] 2026-02-08 03:24:51,241 | INFO     | **************************************
[2026-02-08 04:25:28] 2026-02-08 03:24:51,241 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 04:25:28] 2026-02-08 03:24:51,241 | INFO     | **************************************
[2026-02-08 04:25:28] 2026-02-08 03:24:51,241 | INFO     | 
[2026-02-08 04:25:28] 2026-02-08 03:24:51,241 | INFO     | architecture information:
[2026-02-08 04:25:28] 2026-02-08 03:24:51,241 | INFO     | executing command: cat /etc/os-release
[2026-02-08 04:25:28] 2026-02-08 03:24:51,251 | INFO     | cat /etc/os-release:
[2026-02-08 04:25:28] NAME="CentOS Linux"
[2026-02-08 04:25:28] VERSION="7 (Core)"
[2026-02-08 04:25:28] ID="centos"
[2026-02-08 04:25:28] ID_LIKE="rhel fedora"
[2026-02-08 04:25:28] VERSION_ID="7"
[2026-02-08 04:25:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 04:25:28] ANSI_COLOR="0;31"
[2026-02-08 04:25:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 04:25:28] HOME_URL="https://www.centos.org/"
[2026-02-08 04:25:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 04:25:28] 
[2026-02-08 04:25:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 04:25:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 04:25:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 04:25:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 04:25:28] 
[2026-02-08 04:25:28] 2026-02-08 03:24:51,251 | INFO     | **************************************
[2026-02-08 04:25:28] 2026-02-08 03:24:51,754 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-02-08 04:25:28] 2026-02-08 03:24:51,767 | INFO     | sufficient remaining disk space (694696280064 B)
[2026-02-08 04:25:28] 2026-02-08 03:24:51,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 04:25:28] 2026-02-08 03:24:51,767 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 04:25:28] 2026-02-08 03:24:51,767 | INFO     | update_server=False
[2026-02-08 04:25:28] 2026-02-08 03:24:51,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 04:25:28] 2026-02-08 03:24:51,821 | INFO     | all payload control threads have been joined
[2026-02-08 04:25:28] 2026-02-08 03:24:51,913 | INFO     | all job control threads have been joined
[2026-02-08 04:25:28] 2026-02-08 03:24:51,933 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-08 04:25:28] 2026-02-08 03:24:51,933 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-08 04:25:28] 2026-02-08 03:24:51,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 04:25:28] 2026-02-08 03:24:51,933 | INFO     | will abort loop
[2026-02-08 04:25:28] 2026-02-08 03:24:51,977 | INFO     | all data control threads have been joined
[2026-02-08 04:25:28] 2026-02-08 03:24:52,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 04:25:28] 2026-02-08 03:24:52,773 | INFO     | [job] retrieve thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:52,827 | INFO     | [payload] control thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:52,890 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:52,918 | INFO     | [job] control thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:52,938 | INFO     | [job] job monitor thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:52,982 | INFO     | [data] control thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,116 | INFO     | [payload] validate_post thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,152 | INFO     | [payload] failed_post thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,180 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,380 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,381 | INFO     | [job] validate thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,383 | INFO     | [data] copytool_in thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:53,527 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 04:25:28] 2026-02-08 03:24:54,181 | INFO     | [data] copytool_out thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:54,266 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:54,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 04:25:28] 2026-02-08 03:24:55,724 | INFO     | [job] queue monitor thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:24:57,532 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 04:25:28] 2026-02-08 03:25:22,156 | INFO     | [monitor] cgroup control has ended
[2026-02-08 04:25:28] 2026-02-08 03:25:22,391 | INFO     | PID=2016833 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 04:25:28] 2026-02-08 03:25:22,391 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 04:25:28] 2026-02-08 03:25:22,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 04:25:28] 2026-02-08 03:25:22,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 04:25:28] 2026-02-08 03:25:23,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140423639144256)>', '<ExcThread(monitor, started 140423234295552)>']
[2026-02-08 04:25:28] 2026-02-08 03:25:24,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 04:25:28] 2026-02-08 03:25:24,402 | INFO     | [monitor] control thread has ended
[2026-02-08 04:25:28] 2026-02-08 03:25:28,496 | INFO     | all workflow threads have been joined
[2026-02-08 04:25:28] 2026-02-08 03:25:28,496 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 04:25:28] 2026-02-08 03:25:28,496 | INFO     | traces error code: 0
[2026-02-08 04:25:28] 2026-02-08 03:25:28,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 04:25:28] 2026-02-08 03:25:28,560 [wrapper] ==== pilot stdout END ====
[2026-02-08 04:25:28] 2026-02-08 03:25:28,562 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 04:25:28] 2026-02-08 03:25:28,563 [wrapper] pilotpid: 2016833
[2026-02-08 04:25:28] 2026-02-08 03:25:28,565 [wrapper] Pilot exit status: 0
[2026-02-08 04:25:28] 2026-02-08 03:25:28,570 [wrapper] pandaids: 7006748760
[2026-02-08 04:25:28] 2026-02-08 03:25:28,582 [wrapper] cleanup supervisor_pilot 2027761 2016834
[2026-02-08 04:25:28] 2026-02-08 03:25:28,584 [wrapper] Test setup, not cleaning
[2026-02-08 04:25:28] 2026-02-08 03:25:28,585 [wrapper] apfmon messages muted
[2026-02-08 04:25:28] 2026-02-08 03:25:28,586 [wrapper] ==== wrapper stdout END ====
[2026-02-08 04:25:28] 2026-02-08 03:25:28,588 [wrapper] ==== wrapper stderr END ====
[2026-02-08 04:25:28]  *** Error codes and diagnostics ***
[2026-02-08 04:25:28]     "exeErrorCode": 0,
[2026-02-08 04:25:28]     "exeErrorDiag": "",
[2026-02-08 04:25:28]     "pilotErrorCode": 0,
[2026-02-08 04:25:28]     "pilotErrorDiag": "",
[2026-02-08 04:25:28]  *** Listing of results directory ***
[2026-02-08 04:25:28] total 951756
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc    584627 Feb  7 21:44 pilot3.tar.gz
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc      5111 Feb  7 21:44 queuedata.json
[2026-02-08 04:25:28] -rwx------ 1 boinc boinc     36322 Feb  7 21:44 runpilot2-wrapper.sh
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc       100 Feb  8 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 04:25:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 03:19 run_atlas
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc       105 Feb  8 03:19 job.xml
[2026-02-08 04:25:28] -rw-r--r-- 2 boinc boinc     15845 Feb  8 03:19 start_atlas.sh
[2026-02-08 04:25:28] drwxrwx--x 2 boinc boinc      4096 Feb  8 03:19 shared
[2026-02-08 04:25:28] -rw-r--r-- 2 boinc boinc    597965 Feb  8 03:19 input.tar.gz
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc      6727 Feb  8 03:19 init_data.xml
[2026-02-08 04:25:28] -rw-r--r-- 2 boinc boinc 682040522 Feb  8 03:19 EVNT.48431094._000312.pool.root.1
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc         0 Feb  8 03:19 boinc_lockfile
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc      2555 Feb  8 03:20 pandaJob.out
[2026-02-08 04:25:28] -rw------- 1 boinc boinc   1009518 Feb  8 03:20 agis_schedconf.cvmfs.json
[2026-02-08 04:25:28] -rw------- 1 boinc boinc   1513088 Feb  8 03:20 agis_ddmendpoints.agis.ALL.json
[2026-02-08 04:25:28] -rw------- 1 boinc boinc       446 Feb  8 03:20 workernode_map.json
[2026-02-08 04:25:28] drwx------ 5 boinc boinc      4096 Feb  8 03:20 pilot3
[2026-02-08 04:25:28] -rw------- 1 boinc boinc 286623629 Feb  8 04:24 HITS.48431096._008291.pool.root.1
[2026-02-08 04:25:28] -rw------- 1 boinc boinc      1019 Feb  8 04:24 memory_monitor_summary.json
[2026-02-08 04:25:28] -rw------- 1 boinc boinc    414476 Feb  8 04:24 log.48431096._008291.job.log.tgz.1
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc       530 Feb  8 04:24 boinc_task_state.xml
[2026-02-08 04:25:28] -rw------- 1 boinc boinc      6358 Feb  8 04:24 heartbeat.json
[2026-02-08 04:25:28] -rw------- 1 boinc boinc        95 Feb  8 04:25 pilot_heartbeat.json
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc      8192 Feb  8 04:25 boinc_mmap_file
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc        27 Feb  8 04:25 wrapper_checkpoint.txt
[2026-02-08 04:25:28] -rw------- 1 boinc boinc      4938 Feb  8 04:25 pilotlog.txt
[2026-02-08 04:25:28] -rw------- 1 boinc boinc    580022 Feb  8 04:25 log.48431096._008291.job.log.1
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc       620 Feb  8 04:25 runtime_log
[2026-02-08 04:25:28] -rw------- 1 boinc boinc       357 Feb  8 04:25 output.list
[2026-02-08 04:25:28] -rw------- 1 boinc boinc   1013760 Feb  8 04:25 result.tar.gz
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc      9131 Feb  8 04:25 runtime_log.err
[2026-02-08 04:25:28] -rw------- 1 boinc boinc       706 Feb  8 04:25 q3ZNDmTL488nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmB3bKDmCmz3Bo.diag
[2026-02-08 04:25:28] -rw-r--r-- 1 boinc boinc     21846 Feb  8 04:25 stderr.txt
[2026-02-08 04:25:28] HITS file was successfully produced:
[2026-02-08 04:25:28] -rw------- 1 boinc boinc 286623629 Feb  8 04:24 shared/HITS.pool.root.1
[2026-02-08 04:25:28]  *** Contents of shared directory: ***
[2026-02-08 04:25:28] total 947564
[2026-02-08 04:25:28] -rw-r--r-- 2 boinc boinc     15845 Feb  8 03:19 start_atlas.sh
[2026-02-08 04:25:28] -rw-r--r-- 2 boinc boinc    597965 Feb  8 03:19 input.tar.gz
[2026-02-08 04:25:28] -rw-r--r-- 2 boinc boinc 682040522 Feb  8 03:19 ATLAS.root_0
[2026-02-08 04:25:28] -rw------- 1 boinc boinc 286623629 Feb  8 04:24 HITS.pool.root.1
[2026-02-08 04:25:28] -rw------- 1 boinc boinc   1013760 Feb  8 04:25 result.tar.gz
04:25:30 (2012638): run_atlas exited; CPU time 42786.663027
04:25:30 (2012638): called boinc_finish(0)

</stderr_txt>
]]>

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