Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:42:56 (2414): wrapper (7.7.26015): starting
01:42:56 (2414): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 01:42:56] Arguments: --nthreads 8
[2026-02-08 01:42:56] Threads: 8
[2026-02-08 01:42:56] Checking for CVMFS
[2026-02-08 01:42:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 01:42:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 01:42:56] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 01:42:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 01:42:56] 2.11.0.0 5154 171357 86240 156001 3 1 2695215 4096000 0 130560 8 7306482 99.383 10343162 474 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-08 01:42:56] CVMFS is ok
[2026-02-08 01:42:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 01:42:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 01:42:56] Further information can be found at the LHC@home message board.
[2026-02-08 01:42:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 01:42:56] Checking for apptainer binary...
[2026-02-08 01:42:56] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-08 01:42:56] apptainer is not installed, using version from CVMFS
[2026-02-08 01:42:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 01:42:56] WARNING: Environment variable TMPDIR already has value [/tmp/job_11082495/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node269
[2026-02-08 01:42:56] apptainer works
[2026-02-08 01:42:56] Set ATHENA_PROC_NUMBER=8
[2026-02-08 01:42:56] Set ATHENA_CORE_NUMBER=8
[2026-02-08 01:42:56] Starting ATLAS job with PandaID=7000833415
[2026-02-08 01:42:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11082495/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 02:34:15]  *** The last 200 lines of the pilot log: ***
[2026-02-08 02:34:15] ]
[2026-02-08 02:34:15] 2026-02-08 01:33:09,912 | INFO     | time since job start (3004s) is within the limit (349056.0s)
[2026-02-08 02:34:15] 2026-02-08 01:33:09,923 | INFO     | transferring file log.48442098._004445.job.log.tgz.1 from /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/log.48442098._004445.job.log.tgz.1 to /tmp/j
[2026-02-08 02:34:15] 2026-02-08 01:33:09,923 | INFO     | executing command: /usr/bin/env mv /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/log.48442098._004445.job.log.tgz.1 /tmp/job_11082495/atlas/pilot/sl
[2026-02-08 02:34:15] 2026-02-08 01:33:09,933 | INFO     | adding to output.list: log.48442098._004445.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/2f/log.48442098._004445.job.log.tg
[2026-02-08 02:34:15] 2026-02-08 01:33:09,933 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 02:34:15] 2026-02-08 01:33:09,933 | INFO     | summary of transferred files:
[2026-02-08 02:34:15] 2026-02-08 01:33:09,933 | INFO     |  -- lfn=log.48442098._004445.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 02:34:15] 2026-02-08 01:33:09,933 | INFO     | stage-out finished correctly
[2026-02-08 02:34:15] 2026-02-08 01:33:11,927 | INFO     | time since job start (3006s) is within the limit (349056.0s)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,196 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 02:34:15] 2026-02-08 01:33:13,551 | WARNING  | process 11047 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 02:34:15] 2026-02-08 01:33:13,552 | INFO     | using path: /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,552 | INFO     | using path: /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,552 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-08 02:34:15] 2026-02-08 01:33:13,552 | WARNING  | maxPSS not found in memory monitor output
[2026-02-08 02:34:15] 2026-02-08 01:33:13,553 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3415649 B
[2026-02-08 02:34:15] 2026-02-08 01:33:13,553 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15624 B
[2026-02-08 02:34:15] 2026-02-08 01:33:13,553 | INFO     | executing command: df -mP /tmp/job_11082495/atlas/pilot/slots/0
[2026-02-08 02:34:15] 2026-02-08 01:33:13,561 | INFO     | sufficient remaining disk space (222791991296 B)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,562 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,562 | INFO     | size of work directory /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415: 3709087 B (within 5033164800 B limit)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,562 | INFO     | pfn file=/tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/HITS.48442098._004445.pool.root.1 does not exist (skip from workdir size calculation)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,562 | INFO     | total size of present files: 0 B (workdir size: 3709087 B)
[2026-02-08 02:34:15] 2026-02-08 01:33:13,562 | INFO     | output file size check: skipping output file /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/HITS.48442098._004445.pool.root.1 since it does not exist
[2026-02-08 02:34:15] 2026-02-08 01:33:13,719 | INFO     | number of running child processes to parent process 11047: 1
[2026-02-08 02:34:15] 2026-02-08 01:33:13,719 | INFO     | maximum number of monitored processes: 6
[2026-02-08 02:34:15] 2026-02-08 01:33:13,933 | INFO     | time since job start (3008s) is within the limit (349056.0s)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,151 | INFO     | job 7000833415 has state=finished
[2026-02-08 02:34:15] 2026-02-08 01:33:14,152 | INFO     | preparing for final server update for job 7000833415 in state='finished'
[2026-02-08 02:34:15] 2026-02-08 01:33:14,152 | INFO     | reading metadata from: /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/jobReport.json
[2026-02-08 02:34:15] 2026-02-08 01:33:14,153 | INFO     | added worker_node to metadata from /tmp/job_11082495/atlas/pilot/slots/0/workernode_map.json
[2026-02-08 02:34:15] 2026-02-08 01:33:14,153 | INFO     | this job has now completed (state=finished)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,153 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,153 | INFO     | log transfer has been attempted: DONE
[2026-02-08 02:34:15] 2026-02-08 01:33:14,153 | INFO     | job 7000833415 has finished - writing final server update
[2026-02-08 02:34:15] 2026-02-08 01:33:14,154 | INFO     | total number of processed events: 400 (read)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,177 | INFO     | using path: /tmp/job_11082495/atlas/pilot/slots/0/PanDA_Pilot-7000833415/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,177 | INFO     | extracted standard info from prmon json
[2026-02-08 02:34:15] 2026-02-08 01:33:14,177 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 02:34:15] 2026-02-08 01:33:14,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 02:34:15] 2026-02-08 01:33:14,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 02:34:15] 2026-02-08 01:33:14,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 02:34:15] 2026-02-08 01:33:14,178 | INFO     | fitting pss+swap vs Time
[2026-02-08 02:34:15] 2026-02-08 01:33:14,178 | INFO     | sum of square deviations: 22960430.5
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | sum of deviations: -4447251482.000001
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | mean x: 1770512956.5
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | mean y: 2672427.476190476
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | intersect: 342936850847.8167
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | chi2: 0.029522564555114792
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | current memory leak: -193.69 B/s (using 42 data points, chi2=0.03)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | could have reported an average CPU frequency of 2364 MHz (5 samples)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | ..............................
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . Timing measurements:
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . get job = 0 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . initial setup = 3 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . payload setup = 2 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . stage-in = 0 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . payload execution = 2986 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . stage-out = 0 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | . log creation = 0 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,179 | INFO     | ..............................
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | 
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | job summary report
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | --------------------------------------------------
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | PanDA job id: 7000833415
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | task id: 48442098
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | errors: (none)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | pilot state: finished 
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | transexitcode: 0
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | exeerrorcode: 0
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | exeerrordiag: 
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | exitcode: 0
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | exitmsg: OK
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | cpuconsumptiontime: 20646 s
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | nevents: 400
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | neventsw: 0
[2026-02-08 02:34:15] 2026-02-08 01:33:14,229 | INFO     | pid: 11047
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | pgrp: 11047
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | corecount: 8
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | event service: False
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | sizes: {0: 2282619, 1: 2283247, 11: 2283247, 2993: 2308736, 2994: 2317764, 2997: 2317820, 2998: 2318202}
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | --------------------------------------------------
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | 
[2026-02-08 02:34:15] 2026-02-08 01:33:14,230 | INFO     | executing command: ls -lF /tmp/job_11082495/atlas/pilot/slots/0
[2026-02-08 02:34:15] 2026-02-08 01:33:14,241 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,241 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,241 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,241 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | job 7000833415 has completed (purged errors)
[2026-02-08 02:34:15] 2026-02-08 01:33:14,242 | INFO     | overall cleanup function is called
[2026-02-08 02:34:15] 2026-02-08 01:33:15,248 | INFO     | --- collectZombieJob: --- 10, [11047]
[2026-02-08 02:34:15] 2026-02-08 01:33:15,248 | INFO     | zombie collector waiting for pid 11047
[2026-02-08 02:34:15] 2026-02-08 01:33:15,248 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 02:34:15] 2026-02-08 01:33:15,248 | INFO     | collected zombie processes
[2026-02-08 02:34:15] 2026-02-08 01:33:15,248 | INFO     | will attempt to kill all subprocesses of pid=11047
[2026-02-08 02:34:15] 2026-02-08 01:33:15,407 | INFO     | process IDs to be killed: [11047] (in reverse order)
[2026-02-08 02:34:15] 2026-02-08 01:33:15,458 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 02:34:15] 2026-02-08 01:33:15,459 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 02:34:15] 2026-02-08 01:33:15,464 | INFO     | did not find any defunct processes belonging to 11047
[2026-02-08 02:34:15] 2026-02-08 01:33:15,469 | INFO     | did not find any defunct processes belonging to 11047
[2026-02-08 02:34:15] 2026-02-08 01:33:15,469 | INFO     | ready for new job
[2026-02-08 02:34:15] 2026-02-08 01:33:15,469 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 02:34:15] 2026-02-08 01:33:15,470 | INFO     | **************************************
[2026-02-08 02:34:15] 2026-02-08 01:33:15,470 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 02:34:15] 2026-02-08 01:33:15,470 | INFO     | **************************************
[2026-02-08 02:34:15] 2026-02-08 01:33:15,470 | INFO     | 
[2026-02-08 02:34:15] 2026-02-08 01:33:15,486 | INFO     | architecture information:
[2026-02-08 02:34:15] 2026-02-08 01:33:15,486 | INFO     | executing command: cat /etc/os-release
[2026-02-08 02:34:15] 2026-02-08 01:33:15,495 | INFO     | cat /etc/os-release:
[2026-02-08 02:34:15] NAME="CentOS Linux"
[2026-02-08 02:34:15] VERSION="7 (Core)"
[2026-02-08 02:34:15] ID="centos"
[2026-02-08 02:34:15] ID_LIKE="rhel fedora"
[2026-02-08 02:34:15] VERSION_ID="7"
[2026-02-08 02:34:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 02:34:15] ANSI_COLOR="0;31"
[2026-02-08 02:34:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 02:34:15] HOME_URL="https://www.centos.org/"
[2026-02-08 02:34:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 02:34:15] 
[2026-02-08 02:34:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 02:34:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 02:34:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 02:34:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 02:34:15] 
[2026-02-08 02:34:15] 2026-02-08 01:33:15,495 | INFO     | **************************************
[2026-02-08 02:34:15] 2026-02-08 01:33:15,998 | INFO     | executing command: df -mP /tmp/job_11082495/atlas/pilot/slots/0
[2026-02-08 02:34:15] 2026-02-08 01:33:16,005 | INFO     | sufficient remaining disk space (222796185600 B)
[2026-02-08 02:34:15] 2026-02-08 01:33:16,005 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 02:34:15] 2026-02-08 01:33:16,005 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 02:34:15] 2026-02-08 01:33:16,005 | INFO     | update_server=False
[2026-02-08 02:34:15] 2026-02-08 01:33:16,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 02:34:15] 2026-02-08 01:33:16,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 02:34:15] 2026-02-08 01:33:16,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 02:34:15] 2026-02-08 01:33:16,116 | INFO     | all job control threads have been joined
[2026-02-08 02:34:15] 2026-02-08 01:33:16,222 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-08 02:34:15] 2026-02-08 01:33:16,222 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-08 02:34:15] 2026-02-08 01:33:16,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 02:34:15] 2026-02-08 01:33:16,222 | INFO     | will abort loop
[2026-02-08 02:34:15] 2026-02-08 01:33:17,011 | INFO     | [job] retrieve thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,011 | INFO     | [job] queue monitor thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,032 | INFO     | all data control threads have been joined
[2026-02-08 02:34:15] 2026-02-08 01:33:17,121 | INFO     | [job] control thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,227 | INFO     | [job] job monitor thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,277 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,305 | INFO     | [job] validate thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,396 | INFO     | all payload control threads have been joined
[2026-02-08 02:34:15] 2026-02-08 01:33:17,561 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,573 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,653 | INFO     | [data] copytool_in thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:17,824 | INFO     | [payload] validate_post thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:18,011 | INFO     | [data] copytool_out thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:18,037 | INFO     | [data] control thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:18,241 | INFO     | [payload] failed_post thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:18,401 | INFO     | [payload] control thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:19,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 02:34:15] 2026-02-08 01:33:23,258 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:26,090 | INFO     | job.realtimelogging is not enabled
[2026-02-08 02:34:15] 2026-02-08 01:33:27,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 02:34:15] 2026-02-08 01:33:47,206 | INFO     | PID=6393 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-08 02:34:15] 2026-02-08 01:33:47,206 | INFO     | .. there are 3 such processes running
[2026-02-08 02:34:15] 2026-02-08 01:33:47,206 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 02:34:15] 2026-02-08 01:33:47,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 02:34:15] 2026-02-08 01:33:47,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 02:34:15] 2026-02-08 01:34:09,719 | INFO     | [monitor] cgroup control has ended
[2026-02-08 02:34:15] 2026-02-08 01:34:10,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-02-08 02:34:15] 2026-02-08 01:34:11,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 02:34:15] 2026-02-08 01:34:11,327 | INFO     | [monitor] control thread has ended
[2026-02-08 02:34:15] 2026-02-08 01:34:15,385 | INFO     | all workflow threads have been joined
[2026-02-08 02:34:15] 2026-02-08 01:34:15,385 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 02:34:15] 2026-02-08 01:34:15,385 | INFO     | traces error code: 0
[2026-02-08 02:34:15] 2026-02-08 01:34:15,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 02:34:15] 2026-02-08 01:34:15,446 [wrapper] ==== pilot stdout END ====
[2026-02-08 02:34:15] 2026-02-08 01:34:15,448 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 02:34:15] 2026-02-08 01:34:15,449 [wrapper] pilotpid: 6393
[2026-02-08 02:34:15] 2026-02-08 01:34:15,451 [wrapper] Pilot exit status: 0
[2026-02-08 02:34:15] 2026-02-08 01:34:15,455 [wrapper] pandaids: 7000833415
[2026-02-08 02:34:15] 2026-02-08 01:34:15,490 [wrapper] cleanup supervisor_pilot 18619 6394
[2026-02-08 02:34:15] 2026-02-08 01:34:15,492 [wrapper] Test setup, not cleaning
[2026-02-08 02:34:15] 2026-02-08 01:34:15,493 [wrapper] apfmon messages muted
[2026-02-08 02:34:15] 2026-02-08 01:34:15,494 [wrapper] ==== wrapper stdout END ====
[2026-02-08 02:34:15] 2026-02-08 01:34:15,495 [wrapper] ==== wrapper stderr END ====
[2026-02-08 02:34:15]  *** Error codes and diagnostics ***
[2026-02-08 02:34:15]     "exeErrorCode": 0,
[2026-02-08 02:34:15]     "exeErrorDiag": "",
[2026-02-08 02:34:15]     "pilotErrorCode": 0,
[2026-02-08 02:34:15]     "pilotErrorDiag": "",
[2026-02-08 02:34:15]  *** Listing of results directory ***
[2026-02-08 02:34:15] total 669576
[2026-02-08 02:34:15] -rwx------ 1 mf493845 unix-user     36322 Feb  7 14:37 runpilot2-wrapper.sh
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user    584627 Feb  7 14:39 pilot3.tar.gz
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      5111 Feb  7 14:42 queuedata.json
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user       100 Feb  7 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 02:34:15] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  7 23:36 run_atlas
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user       105 Feb  7 23:36 job.xml
[2026-02-08 02:34:15] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 01:42 start_atlas.sh
[2026-02-08 02:34:15] drwxrwx--x 2 mf493845 unix-user       100 Feb  8 01:42 shared
[2026-02-08 02:34:15] -rw-r--r-- 2 mf493845 unix-user    597955 Feb  8 01:42 input.tar.gz
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      6388 Feb  8 01:42 init_data.xml
[2026-02-08 02:34:15] -rw-r--r-- 2 mf493845 unix-user 495785729 Feb  8 01:42 EVNT.48442096._000089.pool.root.1
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user         0 Feb  8 01:42 boinc_setup_complete
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      8192 Feb  8 01:42 boinc_mmap_file
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user         0 Feb  8 01:42 boinc_lockfile
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      2528 Feb  8 01:42 pandaJob.out
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user   1009502 Feb  8 01:43 agis_schedconf.cvmfs.json
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user   1513088 Feb  8 01:43 agis_ddmendpoints.agis.ALL.json
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user       418 Feb  8 01:43 workernode_map.json
[2026-02-08 02:34:15] drwx------ 5 mf493845 unix-user       440 Feb  8 01:43 pilot3
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user 184397662 Feb  8 02:32 HITS.48442098._004445.pool.root.1
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user        95 Feb  8 02:32 pilot_heartbeat.json
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      1013 Feb  8 02:33 memory_monitor_summary.json
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user    303404 Feb  8 02:33 log.48442098._004445.job.log.tgz.1
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      6314 Feb  8 02:33 heartbeat.json
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      5088 Feb  8 02:34 pilotlog.txt
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user    471508 Feb  8 02:34 log.48442098._004445.job.log.1
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user       357 Feb  8 02:34 output.list
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user       620 Feb  8 02:34 runtime_log
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user    788480 Feb  8 02:34 result.tar.gz
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user      9219 Feb  8 02:34 runtime_log.err
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user       644 Feb  8 02:34 6oPNDm3fx88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUXbKDmtGPXtn.diag
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user     23211 Feb  8 02:34 stderr.txt
[2026-02-08 02:34:15] HITS file was successfully produced:
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user 184397662 Feb  8 02:32 shared/HITS.pool.root.1
[2026-02-08 02:34:15]  *** Contents of shared directory: ***
[2026-02-08 02:34:15] total 665616
[2026-02-08 02:34:15] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 01:42 start_atlas.sh
[2026-02-08 02:34:15] -rw-r--r-- 2 mf493845 unix-user    597955 Feb  8 01:42 input.tar.gz
[2026-02-08 02:34:15] -rw-r--r-- 2 mf493845 unix-user 495785729 Feb  8 01:42 ATLAS.root_0
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user 184397662 Feb  8 02:32 HITS.pool.root.1
[2026-02-08 02:34:15] -rw------- 1 mf493845 unix-user    788480 Feb  8 02:34 result.tar.gz
02:34:17 (2414): run_atlas exited; CPU time 20708.187948
02:34:17 (2414): called boinc_finish(0)

</stderr_txt>
]]>

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