Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:08:41 (19492): wrapper (7.7.26015): starting
15:08:41 (19492): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 15:08:41] Arguments: --nthreads 12
[2026-02-07 15:08:41] Threads: 12
[2026-02-07 15:08:41] Checking for CVMFS
[2026-02-07 15:08:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 15:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 15:08:41] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 15:08:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 15:08:41] 2.11.2.0 2979 393262 107908 155994 2 52 18045796 20275201 1 130560 2 167949005 99.954 22754918 16632 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-07 15:08:41] CVMFS is ok
[2026-02-07 15:08:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 15:08:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 15:08:41] Further information can be found at the LHC@home message board.
[2026-02-07 15:08:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 15:08:41] Checking for apptainer binary...
[2026-02-07 15:08:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 15:08:41] Running /usr/bin/apptainer --version
[2026-02-07 15:08:41] apptainer version 1.3.2-1.el7
[2026-02-07 15:08:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 15:08:43] c-205-7.aglt2.org
[2026-02-07 15:08:43] apptainer works
[2026-02-07 15:08:43] Set ATHENA_PROC_NUMBER=12
[2026-02-07 15:08:43] Set ATHENA_CORE_NUMBER=12
[2026-02-07 15:08:43] Starting ATLAS job with PandaID=7000741028
[2026-02-07 15:08:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 16:47:22]  *** The last 200 lines of the pilot log: ***
[2026-02-07 16:47:22]  replicas=None
[2026-02-07 16:47:22]  scope=mc23_13p6TeV
[2026-02-07 16:47:22]  status=None
[2026-02-07 16:47:22]  status_code=0
[2026-02-07 16:47:22]  storage_token=
[2026-02-07 16:47:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7000741028/log.48431113._004990.job.log.tgz.1
[2026-02-07 16:47:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/02/log.48431113._004990.job.log.tgz.1
[2026-02-07 16:47:22]  workdir=None
[2026-02-07 16:47:22] ]
[2026-02-07 16:47:22] 2026-02-07 21:46:48,859 | INFO     | transferring file log.48431113._004990.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7000741028/log.48431113._004990.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-07 16:47:22] 2026-02-07 21:46:48,859 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7000741028/log.48431113._004990.job.log.tgz.1 /tmp/boinchome/slots/0/log.48431113._004990.job
[2026-02-07 16:47:22] 2026-02-07 21:46:48,881 | INFO     | adding to output.list: log.48431113._004990.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d6/02/log.48431113._004990.job.log.tg
[2026-02-07 16:47:22] 2026-02-07 21:46:48,882 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 16:47:22] 2026-02-07 21:46:48,882 | INFO     | summary of transferred files:
[2026-02-07 16:47:22] 2026-02-07 21:46:48,882 | INFO     |  -- lfn=log.48431113._004990.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 16:47:22] 2026-02-07 21:46:48,883 | INFO     | stage-out finished correctly
[2026-02-07 16:47:22] 2026-02-07 21:46:48,964 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 16:47:22] 2026-02-07 21:46:49,610 | INFO     | PID=23178 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 16:47:22] 2026-02-07 21:46:50,017 | INFO     | job 7000741028 has state=finished
[2026-02-07 16:47:22] 2026-02-07 21:46:50,017 | INFO     | preparing for final server update for job 7000741028 in state='finished'
[2026-02-07 16:47:22] 2026-02-07 21:46:50,018 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7000741028/jobReport.json
[2026-02-07 16:47:22] 2026-02-07 21:46:50,021 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-07 16:47:22] 2026-02-07 21:46:50,022 | INFO     | this job has now completed (state=finished)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,022 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,022 | INFO     | log transfer has been attempted: DONE
[2026-02-07 16:47:22] 2026-02-07 21:46:50,022 | INFO     | job 7000741028 has finished - writing final server update
[2026-02-07 16:47:22] 2026-02-07 21:46:50,023 | INFO     | total number of processed events: 400 (read)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,025 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7000741028/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,026 | INFO     | extracted standard info from prmon json
[2026-02-07 16:47:22] 2026-02-07 21:46:50,026 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 16:47:22] 2026-02-07 21:46:50,026 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 16:47:22] 2026-02-07 21:46:50,026 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 16:47:22] 2026-02-07 21:46:50,026 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 16:47:22] 2026-02-07 21:46:50,028 | INFO     | fitting pss+swap vs Time
[2026-02-07 16:47:22] 2026-02-07 21:46:50,028 | INFO     | sum of square deviations: 218571540.0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,029 | INFO     | sum of deviations: 3804501436.0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,029 | INFO     | mean x: 1770497956.0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,029 | INFO     | mean y: 2736431.8764044945
[2026-02-07 16:47:22] 2026-02-07 21:46:50,029 | INFO     | intersect: -30814917211.58086
[2026-02-07 16:47:22] 2026-02-07 21:46:50,029 | INFO     | chi2: 0.014282043074960529
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | current memory leak: 17.41 B/s (using 89 data points, chi2=0.01)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | could have reported an average CPU frequency of 1706 MHz (7 samples)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | ..............................
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | . Timing measurements:
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | . get job = 0 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | . initial setup = 7 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | . payload setup = 7 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,030 | INFO     | . stage-in = 0 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,031 | INFO     | . payload execution = 5841 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,031 | INFO     | . stage-out = 0 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,031 | INFO     | . log creation = 0 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,031 | INFO     | ..............................
[2026-02-07 16:47:22] 2026-02-07 21:46:50,107 | INFO     | 
[2026-02-07 16:47:22] 2026-02-07 21:46:50,107 | INFO     | job summary report
[2026-02-07 16:47:22] 2026-02-07 21:46:50,108 | INFO     | --------------------------------------------------
[2026-02-07 16:47:22] 2026-02-07 21:46:50,108 | INFO     | PanDA job id: 7000741028
[2026-02-07 16:47:22] 2026-02-07 21:46:50,108 | INFO     | task id: 48431113
[2026-02-07 16:47:22] 2026-02-07 21:46:50,108 | INFO     | errors: (none)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,108 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 16:47:22] 2026-02-07 21:46:50,108 | INFO     | pilot state: finished 
[2026-02-07 16:47:22] 2026-02-07 21:46:50,109 | INFO     | transexitcode: 0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,109 | INFO     | exeerrorcode: 0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,109 | INFO     | exeerrordiag: 
[2026-02-07 16:47:22] 2026-02-07 21:46:50,109 | INFO     | exitcode: 0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,109 | INFO     | exitmsg: OK
[2026-02-07 16:47:22] 2026-02-07 21:46:50,109 | INFO     | cpuconsumptiontime: 63518 s
[2026-02-07 16:47:22] 2026-02-07 21:46:50,110 | INFO     | nevents: 400
[2026-02-07 16:47:22] 2026-02-07 21:46:50,110 | INFO     | neventsw: 0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,110 | INFO     | pid: 27762
[2026-02-07 16:47:22] 2026-02-07 21:46:50,110 | INFO     | pgrp: 27762
[2026-02-07 16:47:22] 2026-02-07 21:46:50,110 | INFO     | corecount: 12
[2026-02-07 16:47:22] 2026-02-07 21:46:50,110 | INFO     | event service: False
[2026-02-07 16:47:22] 2026-02-07 21:46:50,111 | INFO     | sizes: {0: 2283118, 11: 2283118, 5852: 2309786, 5854: 2318840, 5855: 2318978}
[2026-02-07 16:47:22] 2026-02-07 21:46:50,111 | INFO     | --------------------------------------------------
[2026-02-07 16:47:22] 2026-02-07 21:46:50,111 | INFO     | 
[2026-02-07 16:47:22] 2026-02-07 21:46:50,111 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,134 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,135 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,135 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,135 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,135 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,135 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,136 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,136 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,136 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,136 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,136 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,137 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,138 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 16:47:22] 2026-02-07 21:46:50,138 | INFO     | job 7000741028 has completed (purged errors)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,138 | INFO     | overall cleanup function is called
[2026-02-07 16:47:22] 2026-02-07 21:46:50,348 | WARNING  | process 27762 can no longer be monitored (due to stat problems) - aborting
[2026-02-07 16:47:22] 2026-02-07 21:46:50,419 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,419 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,420 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-07 16:47:22] 2026-02-07 21:46:50,420 | WARNING  | maxPSS not found in memory monitor output
[2026-02-07 16:47:22] 2026-02-07 21:46:50,420 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7000741028/payload.stdout) since it has not been created yet
[2026-02-07 16:47:22] 2026-02-07 21:46:50,421 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-07 16:47:22] 2026-02-07 21:46:50,437 | INFO     | sufficient remaining disk space (28413263872 B)
[2026-02-07 16:47:22] 2026-02-07 21:46:50,437 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-07 16:47:22] 2026-02-07 21:46:50,437 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7000741028/HITS.48431113._004990.pool.root.1 since it does not exist
[2026-02-07 16:47:22] 2026-02-07 21:46:50,526 | INFO     | number of running child processes to parent process 27762: 1
[2026-02-07 16:47:22] 2026-02-07 21:46:50,526 | INFO     | maximum number of monitored processes: 6
[2026-02-07 16:47:22] 2026-02-07 21:46:50,526 | INFO     | aborting job monitoring since job object (job id=7000741028) has expired
[2026-02-07 16:47:22] 2026-02-07 21:46:51,146 | INFO     | --- collectZombieJob: --- 10, [27762]
[2026-02-07 16:47:22] 2026-02-07 21:46:51,147 | INFO     | zombie collector waiting for pid 27762
[2026-02-07 16:47:22] 2026-02-07 21:46:51,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 16:47:22] 2026-02-07 21:46:51,147 | INFO     | collected zombie processes
[2026-02-07 16:47:22] 2026-02-07 21:46:51,147 | INFO     | will attempt to kill all subprocesses of pid=27762
[2026-02-07 16:47:22] 2026-02-07 21:46:51,234 | INFO     | process IDs to be killed: [27762] (in reverse order)
[2026-02-07 16:47:22] 2026-02-07 21:46:51,287 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 16:47:22] 2026-02-07 21:46:51,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 16:47:22] 2026-02-07 21:46:51,290 | INFO     | did not find any defunct processes belonging to 27762
[2026-02-07 16:47:22] 2026-02-07 21:46:51,294 | INFO     | did not find any defunct processes belonging to 27762
[2026-02-07 16:47:22] 2026-02-07 21:46:51,294 | INFO     | ready for new job
[2026-02-07 16:47:22] 2026-02-07 21:46:51,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 16:47:22] 2026-02-07 21:46:51,296 | INFO     | **************************************
[2026-02-07 16:47:22] 2026-02-07 21:46:51,296 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 16:47:22] 2026-02-07 21:46:51,296 | INFO     | **************************************
[2026-02-07 16:47:22] 2026-02-07 21:46:51,296 | INFO     | 
[2026-02-07 16:47:22] 2026-02-07 21:46:51,297 | INFO     | architecture information:
[2026-02-07 16:47:22] 2026-02-07 21:46:51,298 | INFO     | executing command: cat /etc/os-release
[2026-02-07 16:47:22] 2026-02-07 21:46:51,313 | INFO     | cat /etc/os-release:
[2026-02-07 16:47:22] NAME="CentOS Linux"
[2026-02-07 16:47:22] VERSION="7 (Core)"
[2026-02-07 16:47:22] ID="centos"
[2026-02-07 16:47:22] ID_LIKE="rhel fedora"
[2026-02-07 16:47:22] VERSION_ID="7"
[2026-02-07 16:47:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 16:47:22] ANSI_COLOR="0;31"
[2026-02-07 16:47:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 16:47:22] HOME_URL="https://www.centos.org/"
[2026-02-07 16:47:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 16:47:22] 
[2026-02-07 16:47:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 16:47:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 16:47:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 16:47:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 16:47:22] 
[2026-02-07 16:47:22] 2026-02-07 21:46:51,314 | INFO     | **************************************
[2026-02-07 16:47:22] 2026-02-07 21:46:51,815 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-07 16:47:22] 2026-02-07 21:46:51,831 | INFO     | sufficient remaining disk space (28413263872 B)
[2026-02-07 16:47:22] 2026-02-07 21:46:51,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 16:47:22] 2026-02-07 21:46:51,832 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 16:47:22] 2026-02-07 21:46:51,832 | INFO     | update_server=False
[2026-02-07 16:47:22] 2026-02-07 21:46:51,832 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 16:47:22] 2026-02-07 21:46:51,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 16:47:22] 2026-02-07 21:46:51,833 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 16:47:22] 2026-02-07 21:46:51,833 | INFO     | aborting loop
[2026-02-07 16:47:22] 2026-02-07 21:46:51,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 16:47:22] 2026-02-07 21:46:52,116 | INFO     | all data control threads have been joined
[2026-02-07 16:47:22] 2026-02-07 21:46:52,834 | INFO     | [job] queue monitor thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:52,837 | INFO     | [job] job monitor thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:52,838 | INFO     | [job] retrieve thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:53,075 | INFO     | [payload] validate_post thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:53,083 | INFO     | all payload control threads have been joined
[2026-02-07 16:47:22] 2026-02-07 21:46:53,119 | INFO     | [data] control thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:53,432 | INFO     | all job control threads have been joined
[2026-02-07 16:47:22] 2026-02-07 21:46:53,715 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:53,760 | INFO     | [job] validate thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:53,870 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:53,975 | INFO     | [data] copytool_out thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:54,013 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:54,087 | INFO     | [payload] control thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:54,149 | INFO     | [payload] failed_post thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:54,228 | INFO     | [data] copytool_in thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:54,437 | INFO     | [job] control thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:46:55,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 16:47:22] 2026-02-07 21:46:59,057 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:47:02,532 | INFO     | job.realtimelogging is not enabled
[2026-02-07 16:47:22] 2026-02-07 21:47:03,537 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 16:47:22] 2026-02-07 21:47:12,356 | INFO     | [monitor] cgroup control has ended
[2026-02-07 16:47:22] 2026-02-07 21:47:14,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370864486208)>', '<ExcThread(monitor, started 140369983428352)>']
[2026-02-07 16:47:22] 2026-02-07 21:47:19,350 | INFO     | all workflow threads have been joined
[2026-02-07 16:47:22] 2026-02-07 21:47:19,351 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 16:47:22] 2026-02-07 21:47:19,351 | INFO     | traces error code: 0
[2026-02-07 16:47:22] 2026-02-07 21:47:19,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 16:47:22] 2026-02-07 21:47:21,802 | INFO     | PID=23178 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 16:47:22] 2026-02-07 21:47:21,803 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 16:47:22] 2026-02-07 21:47:21,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 16:47:22] 2026-02-07 21:47:21,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 16:47:22] 2026-02-07 21:47:21,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 16:47:22] 2026-02-07 21:47:21,803 | INFO     | [monitor] control thread has ended
[2026-02-07 16:47:22] 2026-02-07 21:47:21,884 [wrapper] ==== pilot stdout END ====
[2026-02-07 16:47:22] 2026-02-07 21:47:21,888 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 16:47:22] 2026-02-07 21:47:21,892 [wrapper] pilotpid: 23178
[2026-02-07 16:47:22] 2026-02-07 21:47:21,896 [wrapper] Pilot exit status: 0
[2026-02-07 16:47:22] 2026-02-07 21:47:21,913 [wrapper] pandaids: 7000741028
[2026-02-07 16:47:22] 2026-02-07 21:47:21,954 [wrapper] cleanup supervisor_pilot 21089 23179
[2026-02-07 16:47:22] 2026-02-07 21:47:21,959 [wrapper] Test setup, not cleaning
[2026-02-07 16:47:22] 2026-02-07 21:47:21,963 [wrapper] apfmon messages muted
[2026-02-07 16:47:22] 2026-02-07 21:47:21,967 [wrapper] ==== wrapper stdout END ====
[2026-02-07 16:47:22] 2026-02-07 21:47:21,971 [wrapper] ==== wrapper stderr END ====
[2026-02-07 16:47:22]  *** Error codes and diagnostics ***
[2026-02-07 16:47:22]     "exeErrorCode": 0,
[2026-02-07 16:47:22]     "exeErrorDiag": "",
[2026-02-07 16:47:22]     "pilotErrorCode": 0,
[2026-02-07 16:47:22]     "pilotErrorDiag": "",
[2026-02-07 16:47:22]  *** Listing of results directory ***
[2026-02-07 16:47:22] total 895644
[2026-02-07 16:47:22] -rwx------ 1 boincer umatlas     36322 Feb  7 08:36 runpilot2-wrapper.sh
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas    584627 Feb  7 08:39 pilot3.tar.gz
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas      5111 Feb  7 08:40 queuedata.json
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas       100 Feb  7 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 16:47:22] -rwxr-xr-x 1 boincer umatlas      7986 Feb  7 15:08 run_atlas
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas       105 Feb  7 15:08 job.xml
[2026-02-07 16:47:22] -rw-r--r-- 2 boincer umatlas 649625604 Feb  7 15:08 EVNT.48431111._000099.pool.root.1
[2026-02-07 16:47:22] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 15:08 start_atlas.sh
[2026-02-07 16:47:22] drwxrwx--x 2 boincer umatlas      4096 Feb  7 15:08 shared
[2026-02-07 16:47:22] -rw-r--r-- 2 boincer umatlas    597956 Feb  7 15:08 input.tar.gz
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas         0 Feb  7 15:08 boinc_lockfile
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas      2545 Feb  7 15:08 pandaJob.out
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas        57 Feb  7 15:08 setup.sh.local
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas   1009502 Feb  7 15:08 agis_schedconf.cvmfs.json
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas   1513088 Feb  7 15:08 agis_ddmendpoints.agis.ALL.json
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas       444 Feb  7 15:09 workernode_map.json
[2026-02-07 16:47:22] drwx------ 5 boincer umatlas      4096 Feb  7 15:09 pilot3
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas      5952 Feb  7 16:46 init_data.xml
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas       530 Feb  7 16:46 boinc_task_state.xml
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas 261085302 Feb  7 16:46 HITS.48431113._004990.pool.root.1
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas      1045 Feb  7 16:46 memory_monitor_summary.json
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas    403581 Feb  7 16:46 log.48431113._004990.job.log.tgz.1
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas      6409 Feb  7 16:46 heartbeat.json
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas        27 Feb  7 16:47 wrapper_checkpoint.txt
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas      8192 Feb  7 16:47 boinc_mmap_file
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas       745 Feb  7 16:47 pilotlog.txt
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas        95 Feb  7 16:47 pilot_heartbeat.json
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas    839617 Feb  7 16:47 log.48431113._004990.job.log.1
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas       357 Feb  7 16:47 output.list
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas       620 Feb  7 16:47 runtime_log
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas   1259520 Feb  7 16:47 result.tar.gz
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas      9338 Feb  7 16:47 runtime_log.err
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas       658 Feb  7 16:47 5tSKDmUfx88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpRbKDmkHFREn.diag
[2026-02-07 16:47:22] -rw-r--r-- 1 boincer umatlas     22081 Feb  7 16:47 stderr.txt
[2026-02-07 16:47:22] HITS file was successfully produced:
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas 261085302 Feb  7 16:46 shared/HITS.pool.root.1
[2026-02-07 16:47:22]  *** Contents of shared directory: ***
[2026-02-07 16:47:22] total 891212
[2026-02-07 16:47:22] -rw-r--r-- 2 boincer umatlas 649625604 Feb  7 15:08 ATLAS.root_0
[2026-02-07 16:47:22] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 15:08 start_atlas.sh
[2026-02-07 16:47:22] -rw-r--r-- 2 boincer umatlas    597956 Feb  7 15:08 input.tar.gz
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas 261085302 Feb  7 16:46 HITS.pool.root.1
[2026-02-07 16:47:22] -rw------- 1 boincer umatlas   1259520 Feb  7 16:47 result.tar.gz
16:47:23 (19492): run_atlas exited; CPU time 63505.077957
16:47:23 (19492): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN