Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:56:19 (18708): wrapper (7.7.26015): starting
17:56:19 (18708): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 17:56:19] Arguments: --nthreads 12
[2026-02-07 17:56:19] Threads: 12
[2026-02-07 17:56:19] Checking for CVMFS
[2026-02-07 17:56:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 17:56:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 17:56:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 17:56:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 17:56:20] 2.11.2.0 28623 386054 97252 155998 1 50 19844844 20275200 1 130560 4 167613990 99.948 22565043 16850 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-07 17:56:20] CVMFS is ok
[2026-02-07 17:56:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 17:56:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 17:56:20] Further information can be found at the LHC@home message board.
[2026-02-07 17:56:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 17:56:20] Checking for apptainer binary...
[2026-02-07 17:56:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 17:56:20] Running /usr/bin/apptainer --version
[2026-02-07 17:56:20] apptainer version 1.3.2-1.el7
[2026-02-07 17:56:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 17:56:22] c-205-20.aglt2.org
[2026-02-07 17:56:22] apptainer works
[2026-02-07 17:56:22] Set ATHENA_PROC_NUMBER=12
[2026-02-07 17:56:22] Set ATHENA_CORE_NUMBER=12
[2026-02-07 17:56:22] Starting ATLAS job with PandaID=7000875666
[2026-02-07 17:56:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 19:05:05]  *** The last 200 lines of the pilot log: ***
[2026-02-07 19:05:05]  filetype=log
[2026-02-07 19:05:05]  guid=e7291fcc-aad1-4b09-81c7-811c9cd32aba
[2026-02-07 19:05:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-07 19:05:05]  is_altstaged=None
[2026-02-07 19:05:05]  is_tar=False
[2026-02-07 19:05:05]  lfn=log.48442031._004169.job.log.tgz.1
[2026-02-07 19:05:05]  mtime=0
[2026-02-07 19:05:05]  protocol_id=None
[2026-02-07 19:05:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 19:05:05]  replicas=None
[2026-02-07 19:05:05]  scope=mc23_13p6TeV
[2026-02-07 19:05:05]  status=None
[2026-02-07 19:05:05]  status_code=0
[2026-02-07 19:05:05]  storage_token=
[2026-02-07 19:05:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7000875666/log.48442031._004169.job.log.tgz.1
[2026-02-07 19:05:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/0f/log.48442031._004169.job.log.tgz.1
[2026-02-07 19:05:05]  workdir=None
[2026-02-07 19:05:05] ]
[2026-02-07 19:05:05] 2026-02-08 00:04:30,697 | INFO     | transferring file log.48442031._004169.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7000875666/log.48442031._004169.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-07 19:05:05] 2026-02-08 00:04:30,697 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7000875666/log.48442031._004169.job.log.tgz.1 /tmp/boinchome/slots/0/log.48442031._004169.job
[2026-02-07 19:05:05] 2026-02-08 00:04:30,719 | INFO     | adding to output.list: log.48442031._004169.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/0f/log.48442031._004169.job.log.tg
[2026-02-07 19:05:05] 2026-02-08 00:04:30,719 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 19:05:05] 2026-02-08 00:04:30,720 | INFO     | summary of transferred files:
[2026-02-07 19:05:05] 2026-02-08 00:04:30,720 | INFO     |  -- lfn=log.48442031._004169.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 19:05:05] 2026-02-08 00:04:30,720 | INFO     | stage-out finished correctly
[2026-02-07 19:05:05] 2026-02-08 00:04:32,030 | INFO     | time since job start (4070s) is within the limit (349056.0s)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,373 | INFO     | monitor loop #310: job 0:7000875666 is in state 'finished'
[2026-02-07 19:05:05] 2026-02-08 00:04:32,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,705 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 19:05:05] 2026-02-08 00:04:32,784 | INFO     | job 7000875666 has state=finished
[2026-02-07 19:05:05] 2026-02-08 00:04:32,784 | INFO     | preparing for final server update for job 7000875666 in state='finished'
[2026-02-07 19:05:05] 2026-02-08 00:04:32,785 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7000875666/jobReport.json
[2026-02-07 19:05:05] 2026-02-08 00:04:32,787 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-07 19:05:05] 2026-02-08 00:04:32,788 | INFO     | this job has now completed (state=finished)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,788 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,788 | INFO     | log transfer has been attempted: DONE
[2026-02-07 19:05:05] 2026-02-08 00:04:32,788 | INFO     | job 7000875666 has finished - writing final server update
[2026-02-07 19:05:05] 2026-02-08 00:04:32,789 | INFO     | total number of processed events: 400 (read)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,791 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7000875666/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,791 | INFO     | extracted standard info from prmon json
[2026-02-07 19:05:05] 2026-02-08 00:04:32,792 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 19:05:05] 2026-02-08 00:04:32,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 19:05:05] 2026-02-08 00:04:32,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 19:05:05] 2026-02-08 00:04:32,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 19:05:05] 2026-02-08 00:04:32,794 | INFO     | fitting pss+swap vs Time
[2026-02-07 19:05:05] 2026-02-08 00:04:32,794 | INFO     | sum of square deviations: 66959395.0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,794 | INFO     | sum of deviations: -1655883064.0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,794 | INFO     | mean x: 1770507130.5
[2026-02-07 19:05:05] 2026-02-08 00:04:32,795 | INFO     | mean y: 2700867.4
[2026-02-07 19:05:05] 2026-02-08 00:04:32,795 | INFO     | intersect: 43786740016.59165
[2026-02-07 19:05:05] 2026-02-08 00:04:32,795 | INFO     | chi2: 0.05596064002022357
[2026-02-07 19:05:05] 2026-02-08 00:04:32,795 | INFO     | current memory leak: -24.73 B/s (using 60 data points, chi2=0.06)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,795 | INFO     | could have reported an average CPU frequency of 1695 MHz (6 samples)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | ..............................
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . Timing measurements:
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . get job = 0 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . initial setup = 7 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . payload setup = 7 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . stage-in = 0 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . payload execution = 4045 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,796 | INFO     | . stage-out = 0 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,797 | INFO     | . log creation = 0 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,797 | INFO     | ..............................
[2026-02-07 19:05:05] 2026-02-08 00:04:32,874 | INFO     | 
[2026-02-07 19:05:05] 2026-02-08 00:04:32,874 | INFO     | job summary report
[2026-02-07 19:05:05] 2026-02-08 00:04:32,874 | INFO     | --------------------------------------------------
[2026-02-07 19:05:05] 2026-02-08 00:04:32,875 | INFO     | PanDA job id: 7000875666
[2026-02-07 19:05:05] 2026-02-08 00:04:32,875 | INFO     | task id: 48442031
[2026-02-07 19:05:05] 2026-02-08 00:04:32,875 | INFO     | errors: (none)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,875 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 19:05:05] 2026-02-08 00:04:32,875 | INFO     | pilot state: finished 
[2026-02-07 19:05:05] 2026-02-08 00:04:32,875 | INFO     | transexitcode: 0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | exeerrorcode: 0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | exeerrordiag: 
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | exitcode: 0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | exitmsg: OK
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | cpuconsumptiontime: 43416 s
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | nevents: 400
[2026-02-07 19:05:05] 2026-02-08 00:04:32,876 | INFO     | neventsw: 0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,877 | INFO     | pid: 27073
[2026-02-07 19:05:05] 2026-02-08 00:04:32,877 | INFO     | pgrp: 27073
[2026-02-07 19:05:05] 2026-02-08 00:04:32,877 | INFO     | corecount: 12
[2026-02-07 19:05:05] 2026-02-08 00:04:32,877 | INFO     | event service: False
[2026-02-07 19:05:05] 2026-02-08 00:04:32,877 | INFO     | sizes: {0: 2282837, 1: 2283071, 11: 2283071, 4056: 2308908, 4057: 2317906, 4059: 2318284}
[2026-02-07 19:05:05] 2026-02-08 00:04:32,877 | INFO     | --------------------------------------------------
[2026-02-07 19:05:05] 2026-02-08 00:04:32,878 | INFO     | 
[2026-02-07 19:05:05] 2026-02-08 00:04:32,878 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-07 19:05:05] 2026-02-08 00:04:32,903 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,904 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,904 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,904 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,904 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,904 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,905 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,905 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,905 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,906 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,907 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 19:05:05] 2026-02-08 00:04:32,907 | INFO     | job 7000875666 has completed (purged errors)
[2026-02-07 19:05:05] 2026-02-08 00:04:32,907 | INFO     | overall cleanup function is called
[2026-02-07 19:05:05] 2026-02-08 00:04:33,915 | INFO     | --- collectZombieJob: --- 10, [27073]
[2026-02-07 19:05:05] 2026-02-08 00:04:33,915 | INFO     | zombie collector waiting for pid 27073
[2026-02-07 19:05:05] 2026-02-08 00:04:33,915 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 19:05:05] 2026-02-08 00:04:33,916 | INFO     | collected zombie processes
[2026-02-07 19:05:05] 2026-02-08 00:04:33,916 | INFO     | will attempt to kill all subprocesses of pid=27073
[2026-02-07 19:05:05] 2026-02-08 00:04:34,001 | INFO     | process IDs to be killed: [27073] (in reverse order)
[2026-02-07 19:05:05] 2026-02-08 00:04:34,051 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 19:05:05] 2026-02-08 00:04:34,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 19:05:05] 2026-02-08 00:04:34,055 | INFO     | did not find any defunct processes belonging to 27073
[2026-02-07 19:05:05] 2026-02-08 00:04:34,058 | INFO     | did not find any defunct processes belonging to 27073
[2026-02-07 19:05:05] 2026-02-08 00:04:34,058 | INFO     | ready for new job
[2026-02-07 19:05:05] 2026-02-08 00:04:34,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 19:05:05] 2026-02-08 00:04:34,060 | INFO     | **************************************
[2026-02-07 19:05:05] 2026-02-08 00:04:34,060 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 19:05:05] 2026-02-08 00:04:34,060 | INFO     | **************************************
[2026-02-07 19:05:05] 2026-02-08 00:04:34,060 | INFO     | 
[2026-02-07 19:05:05] 2026-02-08 00:04:34,060 | INFO     | architecture information:
[2026-02-07 19:05:05] 2026-02-08 00:04:34,061 | INFO     | executing command: cat /etc/os-release
[2026-02-07 19:05:05] 2026-02-08 00:04:34,076 | INFO     | cat /etc/os-release:
[2026-02-07 19:05:05] NAME="CentOS Linux"
[2026-02-07 19:05:05] VERSION="7 (Core)"
[2026-02-07 19:05:05] ID="centos"
[2026-02-07 19:05:05] ID_LIKE="rhel fedora"
[2026-02-07 19:05:05] VERSION_ID="7"
[2026-02-07 19:05:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 19:05:05] ANSI_COLOR="0;31"
[2026-02-07 19:05:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 19:05:05] HOME_URL="https://www.centos.org/"
[2026-02-07 19:05:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 19:05:05] 
[2026-02-07 19:05:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 19:05:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 19:05:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 19:05:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 19:05:05] 
[2026-02-07 19:05:05] 2026-02-08 00:04:34,076 | INFO     | **************************************
[2026-02-07 19:05:05] 2026-02-08 00:04:34,579 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-07 19:05:05] 2026-02-08 00:04:34,596 | INFO     | sufficient remaining disk space (28805431296 B)
[2026-02-07 19:05:05] 2026-02-08 00:04:34,596 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 19:05:05] 2026-02-08 00:04:34,596 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 19:05:05] 2026-02-08 00:04:34,596 | INFO     | update_server=False
[2026-02-07 19:05:05] 2026-02-08 00:04:34,596 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 19:05:05] 2026-02-08 00:04:34,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 19:05:05] 2026-02-08 00:04:34,597 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 19:05:05] 2026-02-08 00:04:34,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 19:05:05] 2026-02-08 00:04:34,876 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 19:05:05] 2026-02-08 00:04:34,876 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 19:05:05] 2026-02-08 00:04:34,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 19:05:05] 2026-02-08 00:04:34,887 | INFO     | will abort loop
[2026-02-07 19:05:05] 2026-02-08 00:04:35,239 | INFO     | all payload control threads have been joined
[2026-02-07 19:05:05] 2026-02-08 00:04:35,386 | INFO     | all data control threads have been joined
[2026-02-07 19:05:05] 2026-02-08 00:04:35,602 | INFO     | [job] retrieve thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:35,603 | INFO     | [job] queue monitor thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:35,630 | INFO     | all job control threads have been joined
[2026-02-07 19:05:05] 2026-02-08 00:04:35,727 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:35,778 | INFO     | [payload] validate_post thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:35,852 | INFO     | [data] copytool_in thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:35,892 | INFO     | [job] job monitor thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,244 | INFO     | [payload] control thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,358 | INFO     | [payload] failed_post thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,391 | INFO     | [data] control thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,603 | INFO     | [data] copytool_out thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,635 | INFO     | [job] control thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,845 | INFO     | [job] validate thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,893 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:36,980 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:38,602 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:45,124 | INFO     | job.realtimelogging is not enabled
[2026-02-07 19:05:05] 2026-02-08 00:04:46,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 19:05:05] 2026-02-08 00:04:48,703 | INFO     | [monitor] cgroup control has ended
[2026-02-07 19:05:05] 2026-02-08 00:04:49,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140536049514304)>', '<ExcThread(monitor, started 140535473886976)>']
[2026-02-07 19:05:05] 2026-02-08 00:04:54,221 | INFO     | all workflow threads have been joined
[2026-02-07 19:05:05] 2026-02-08 00:04:54,221 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 19:05:05] 2026-02-08 00:04:54,221 | INFO     | traces error code: 0
[2026-02-07 19:05:05] 2026-02-08 00:04:54,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 19:05:05] 2026-02-08 00:05:05,233 | INFO     | PID=22693 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 19:05:05] 2026-02-08 00:05:05,233 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 19:05:05] 2026-02-08 00:05:05,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 19:05:05] 2026-02-08 00:05:05,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 19:05:05] 2026-02-08 00:05:05,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 19:05:05] 2026-02-08 00:05:05,234 | INFO     | [monitor] control thread has ended
[2026-02-07 19:05:05] 2026-02-08 00:05:05,328 [wrapper] ==== pilot stdout END ====
[2026-02-07 19:05:05] 2026-02-08 00:05:05,332 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 19:05:05] 2026-02-08 00:05:05,335 [wrapper] pilotpid: 22693
[2026-02-07 19:05:05] 2026-02-08 00:05:05,339 [wrapper] Pilot exit status: 0
[2026-02-07 19:05:05] 2026-02-08 00:05:05,354 [wrapper] pandaids: 7000875666
[2026-02-07 19:05:05] 2026-02-08 00:05:05,394 [wrapper] cleanup supervisor_pilot 13450 22694
[2026-02-07 19:05:05] 2026-02-08 00:05:05,398 [wrapper] Test setup, not cleaning
[2026-02-07 19:05:05] 2026-02-08 00:05:05,401 [wrapper] apfmon messages muted
[2026-02-07 19:05:05] 2026-02-08 00:05:05,405 [wrapper] ==== wrapper stdout END ====
[2026-02-07 19:05:05] 2026-02-08 00:05:05,408 [wrapper] ==== wrapper stderr END ====
[2026-02-07 19:05:05]  *** Error codes and diagnostics ***
[2026-02-07 19:05:05]     "exeErrorCode": 0,
[2026-02-07 19:05:05]     "exeErrorDiag": "",
[2026-02-07 19:05:05]     "pilotErrorCode": 0,
[2026-02-07 19:05:05]     "pilotErrorDiag": "",
[2026-02-07 19:05:05]  *** Listing of results directory ***
[2026-02-07 19:05:05] total 664636
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas    584627 Feb  7 13:32 pilot3.tar.gz
[2026-02-07 19:05:05] -rwx------ 1 boincer umatlas     36322 Feb  7 13:34 runpilot2-wrapper.sh
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas      5111 Feb  7 13:35 queuedata.json
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas       100 Feb  7 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 19:05:05] -rwxr-xr-x 1 boincer umatlas      7986 Feb  7 17:56 run_atlas
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas       105 Feb  7 17:56 job.xml
[2026-02-07 19:05:05] -rw-r--r-- 2 boincer umatlas 496947874 Feb  7 17:56 EVNT.48442027._000083.pool.root.1
[2026-02-07 19:05:05] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 17:56 start_atlas.sh
[2026-02-07 19:05:05] drwxrwx--x 2 boincer umatlas      4096 Feb  7 17:56 shared
[2026-02-07 19:05:05] -rw-r--r-- 2 boincer umatlas    597952 Feb  7 17:56 input.tar.gz
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas         0 Feb  7 17:56 boinc_lockfile
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas      2528 Feb  7 17:56 pandaJob.out
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas        57 Feb  7 17:56 setup.sh.local
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas   1009502 Feb  7 17:56 agis_schedconf.cvmfs.json
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas   1513088 Feb  7 17:56 agis_ddmendpoints.agis.ALL.json
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas       445 Feb  7 17:56 workernode_map.json
[2026-02-07 19:05:05] drwx------ 5 boincer umatlas      4096 Feb  7 17:56 pilot3
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas      5953 Feb  7 19:01 init_data.xml
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas 177721962 Feb  7 19:04 HITS.48442031._004169.pool.root.1
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas       530 Feb  7 19:04 boinc_task_state.xml
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas      1045 Feb  7 19:04 memory_monitor_summary.json
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas    388074 Feb  7 19:04 log.48442031._004169.job.log.tgz.1
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas        95 Feb  7 19:04 pilot_heartbeat.json
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas      6413 Feb  7 19:04 heartbeat.json
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas      8192 Feb  7 19:04 boinc_mmap_file
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas        27 Feb  7 19:04 wrapper_checkpoint.txt
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas       745 Feb  7 19:05 pilotlog.txt
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas    598116 Feb  7 19:05 log.48442031._004169.job.log.1
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas       357 Feb  7 19:05 output.list
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas       620 Feb  7 19:05 runtime_log
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas   1003520 Feb  7 19:05 result.tar.gz
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas       659 Feb  7 19:05 UrQLDmgJ288n9Rq4apOajLDm4fhM0noT9bVooX4SDmJTbKDmtEpjyn.diag
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas      9343 Feb  7 19:05 runtime_log.err
[2026-02-07 19:05:05] -rw-r--r-- 1 boincer umatlas     21241 Feb  7 19:05 stderr.txt
[2026-02-07 19:05:05] HITS file was successfully produced:
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas 177721962 Feb  7 19:04 shared/HITS.pool.root.1
[2026-02-07 19:05:05]  *** Contents of shared directory: ***
[2026-02-07 19:05:05] total 660452
[2026-02-07 19:05:05] -rw-r--r-- 2 boincer umatlas 496947874 Feb  7 17:56 ATLAS.root_0
[2026-02-07 19:05:05] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 17:56 start_atlas.sh
[2026-02-07 19:05:05] -rw-r--r-- 2 boincer umatlas    597952 Feb  7 17:56 input.tar.gz
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas 177721962 Feb  7 19:04 HITS.pool.root.1
[2026-02-07 19:05:05] -rw------- 1 boincer umatlas   1003520 Feb  7 19:05 result.tar.gz
19:05:06 (18708): run_atlas exited; CPU time 43391.526269
19:05:06 (18708): called boinc_finish(0)

</stderr_txt>
]]>

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