Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
16:20:44 (1661139): wrapper (7.7.26015): starting
16:20:44 (1661139): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 16:20:44] Arguments: --nthreads 12
[2026-02-08 16:20:44] Threads: 12
[2026-02-08 16:20:44] Checking for CVMFS
[2026-02-08 16:20:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 16:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 16:20:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 16:20:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 16:20:46] 2.13.3.0 540037 954 49108 156026 3 50 2730394 4096001 0 130560 0 842906 99.991 37057 2311 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-02-08 16:20:46] CVMFS is ok
[2026-02-08 16:20:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 16:20:46] Small home clusters do not require a local http proxy but it is suggested if
[2026-02-08 16:20:46] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-02-08 16:20:46] Further information can be found at the LHC@home message board.
[2026-02-08 16:20:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 16:20:46] Checking for apptainer binary...
[2026-02-08 16:20:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 16:20:46] Running /usr/bin/apptainer --version
[2026-02-08 16:20:46] apptainer version 1.4.5
[2026-02-08 16:20:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 16:20:46] BoincUbuntu
[2026-02-08 16:20:46] apptainer works
[2026-02-08 16:20:46] Set ATHENA_PROC_NUMBER=12
[2026-02-08 16:20:46] Set ATHENA_CORE_NUMBER=12
[2026-02-08 16:20:46] Starting ATLAS job with PandaID=7000836359
[2026-02-08 16:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 17:16:05]  *** The last 200 lines of the pilot log: ***
[2026-02-08 17:16:05]  guid=32a3972b-b6ce-42d5-9ee3-bbc0af84b478
[2026-02-08 17:16:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-08 17:16:05]  is_altstaged=None
[2026-02-08 17:16:05]  is_tar=False
[2026-02-08 17:16:05]  lfn=log.48431113._005966.job.log.tgz.1
[2026-02-08 17:16:05]  mtime=0
[2026-02-08 17:16:05]  protocol_id=None
[2026-02-08 17:16:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 17:16:05]  replicas=None
[2026-02-08 17:16:05]  scope=mc23_13p6TeV
[2026-02-08 17:16:05]  status=None
[2026-02-08 17:16:05]  status_code=0
[2026-02-08 17:16:05]  storage_token=
[2026-02-08 17:16:05]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-7000836359/log.48431113._005966.job.log.tgz.1
[2026-02-08 17:16:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/d6/log.48431113._005966.job.log.tgz.1
[2026-02-08 17:16:05]  workdir=None
[2026-02-08 17:16:05] ]
[2026-02-08 17:16:05] 2026-02-08 17:15:27,482 | INFO     | transferring file log.48431113._005966.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-7000836359/log.48431113._005966.job.log.tgz.1 to /var/lib/boinc
[2026-02-08 17:16:05] 2026-02-08 17:15:27,482 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-7000836359/log.48431113._005966.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.484311
[2026-02-08 17:16:05] 2026-02-08 17:15:27,493 | INFO     | adding to output.list: log.48431113._005966.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/d6/log.48431113._005966.job.log.tg
[2026-02-08 17:16:05] 2026-02-08 17:15:27,494 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 17:16:05] 2026-02-08 17:15:27,494 | INFO     | summary of transferred files:
[2026-02-08 17:16:05] 2026-02-08 17:15:27,494 | INFO     |  -- lfn=log.48431113._005966.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 17:16:05] 2026-02-08 17:15:27,494 | INFO     | stage-out finished correctly
[2026-02-08 17:16:05] 2026-02-08 17:15:28,257 | INFO     | time since job start (3273s) is within the limit (349056.0s)
[2026-02-08 17:16:05] 2026-02-08 17:15:30,263 | INFO     | time since job start (3275s) is within the limit (349056.0s)
[2026-02-08 17:16:05] 2026-02-08 17:15:30,797 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 17:16:05] 2026-02-08 17:15:31,751 | WARNING  | process 1670110 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 17:16:05] 2026-02-08 17:15:31,751 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7000836359/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 17:16:05] 2026-02-08 17:15:31,799 | INFO     | number of running child processes to parent process 1670110: 1
[2026-02-08 17:16:05] 2026-02-08 17:15:31,799 | INFO     | maximum number of monitored processes: 6
[2026-02-08 17:16:05] 2026-02-08 17:15:32,268 | INFO     | time since job start (3277s) is within the limit (349056.0s)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,781 | INFO     | job 7000836359 has state=finished
[2026-02-08 17:16:05] 2026-02-08 17:15:33,781 | INFO     | preparing for final server update for job 7000836359 in state='finished'
[2026-02-08 17:16:05] 2026-02-08 17:15:33,781 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7000836359/jobReport.json
[2026-02-08 17:16:05] 2026-02-08 17:15:33,782 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-02-08 17:16:05] 2026-02-08 17:15:33,782 | INFO     | this job has now completed (state=finished)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,782 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,782 | INFO     | log transfer has been attempted: DONE
[2026-02-08 17:16:05] 2026-02-08 17:15:33,782 | INFO     | job 7000836359 has finished - writing final server update
[2026-02-08 17:16:05] 2026-02-08 17:15:33,782 | INFO     | total number of processed events: 400 (read)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7000836359/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | INFO     | extracted standard info from prmon json
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | INFO     | fitting pss+swap vs Time
[2026-02-08 17:16:05] 2026-02-08 17:15:33,784 | INFO     | sum of square deviations: 32179208.0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | sum of deviations: -3888681863.0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | mean x: 1770569379.0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | mean y: 3119672.0212765955
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | intersect: 213966776928.60986
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | chi2: 0.08660028344282238
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | current memory leak: -120.84 B/s (using 47 data points, chi2=0.09)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | could have reported an average CPU frequency of 4114 MHz (5 samples)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | ..............................
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . Timing measurements:
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . get job = 0 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . initial setup = 3 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . payload setup = 2 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . stage-in = 0 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . payload execution = 3254 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . stage-out = 0 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | . log creation = 0 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,785 | INFO     | ..............................
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | 
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | job summary report
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | --------------------------------------------------
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | PanDA job id: 7000836359
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | task id: 48431113
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | errors: (none)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | pilot state: finished 
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | transexitcode: 0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | exeerrorcode: 0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | exeerrordiag: 
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | exitcode: 0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | exitmsg: OK
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | cpuconsumptiontime: 36773 s
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | nevents: 400
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | neventsw: 0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | pid: 1670110
[2026-02-08 17:16:05] 2026-02-08 17:15:33,814 | INFO     | pgrp: 1670110
[2026-02-08 17:16:05] 2026-02-08 17:15:33,815 | INFO     | corecount: 12
[2026-02-08 17:16:05] 2026-02-08 17:15:33,815 | INFO     | event service: False
[2026-02-08 17:16:05] 2026-02-08 17:15:33,815 | INFO     | sizes: {0: 2283126, 11: 2283126, 3260: 2308788, 3261: 2317800, 3265: 2317856, 3268: 2318082}
[2026-02-08 17:16:05] 2026-02-08 17:15:33,815 | INFO     | --------------------------------------------------
[2026-02-08 17:16:05] 2026-02-08 17:15:33,815 | INFO     | 
[2026-02-08 17:16:05] 2026-02-08 17:15:33,815 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | job 7000836359 has completed (purged errors)
[2026-02-08 17:16:05] 2026-02-08 17:15:33,836 | INFO     | overall cleanup function is called
[2026-02-08 17:16:05] 2026-02-08 17:15:34,843 | INFO     | --- collectZombieJob: --- 10, [1670110]
[2026-02-08 17:16:05] 2026-02-08 17:15:34,843 | INFO     | zombie collector waiting for pid 1670110
[2026-02-08 17:16:05] 2026-02-08 17:15:34,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 17:16:05] 2026-02-08 17:15:34,843 | INFO     | collected zombie processes
[2026-02-08 17:16:05] 2026-02-08 17:15:34,843 | INFO     | will attempt to kill all subprocesses of pid=1670110
[2026-02-08 17:16:05] 2026-02-08 17:15:34,890 | INFO     | process IDs to be killed: [1670110] (in reverse order)
[2026-02-08 17:16:05] 2026-02-08 17:15:34,916 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 17:16:05] 2026-02-08 17:15:34,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 17:16:05] 2026-02-08 17:15:34,918 | INFO     | did not find any defunct processes belonging to 1670110
[2026-02-08 17:16:05] 2026-02-08 17:15:34,919 | INFO     | did not find any defunct processes belonging to 1670110
[2026-02-08 17:16:05] 2026-02-08 17:15:34,919 | INFO     | ready for new job
[2026-02-08 17:16:05] 2026-02-08 17:15:34,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 17:16:05] 2026-02-08 17:15:34,920 | INFO     | **************************************
[2026-02-08 17:16:05] 2026-02-08 17:15:34,920 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 17:16:05] 2026-02-08 17:15:34,920 | INFO     | **************************************
[2026-02-08 17:16:05] 2026-02-08 17:15:34,920 | INFO     | 
[2026-02-08 17:16:05] 2026-02-08 17:15:34,920 | INFO     | architecture information:
[2026-02-08 17:16:05] 2026-02-08 17:15:34,921 | INFO     | executing command: cat /etc/os-release
[2026-02-08 17:16:05] 2026-02-08 17:15:34,931 | INFO     | cat /etc/os-release:
[2026-02-08 17:16:05] NAME="CentOS Linux"
[2026-02-08 17:16:05] VERSION="7 (Core)"
[2026-02-08 17:16:05] ID="centos"
[2026-02-08 17:16:05] ID_LIKE="rhel fedora"
[2026-02-08 17:16:05] VERSION_ID="7"
[2026-02-08 17:16:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 17:16:05] ANSI_COLOR="0;31"
[2026-02-08 17:16:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 17:16:05] HOME_URL="https://www.centos.org/"
[2026-02-08 17:16:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 17:16:05] 
[2026-02-08 17:16:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 17:16:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 17:16:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 17:16:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 17:16:05] 
[2026-02-08 17:16:05] 2026-02-08 17:15:34,931 | INFO     | **************************************
[2026-02-08 17:16:05] 2026-02-08 17:15:35,434 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | INFO     | sufficient remaining disk space (265657778176 B)
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | INFO     | update_server=False
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 17:16:05] 2026-02-08 17:15:35,445 | INFO     | aborting loop
[2026-02-08 17:16:05] 2026-02-08 17:15:35,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 17:16:05] 2026-02-08 17:15:36,028 | INFO     | all payload control threads have been joined
[2026-02-08 17:16:05] 2026-02-08 17:15:36,229 | INFO     | all job control threads have been joined
[2026-02-08 17:16:05] 2026-02-08 17:15:36,450 | INFO     | [job] retrieve thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:36,450 | INFO     | [job] job monitor thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:36,451 | INFO     | [job] queue monitor thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:36,513 | INFO     | all data control threads have been joined
[2026-02-08 17:16:05] 2026-02-08 17:15:36,579 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:36,606 | INFO     | [payload] validate_post thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:36,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 17:16:05] 2026-02-08 17:15:37,033 | INFO     | [payload] control thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,234 | INFO     | [job] control thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,442 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,518 | INFO     | [data] control thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,542 | INFO     | [data] copytool_out thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,607 | INFO     | [job] validate thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,682 | INFO     | [payload] failed_post thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,763 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,834 | INFO     | [data] copytool_in thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:37,834 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:15:40,834 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 17:16:05] 2026-02-08 17:16:00,025 | INFO     | [monitor] cgroup control has ended
[2026-02-08 17:16:05] 2026-02-08 17:16:00,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856778544960)>', '<ExcThread(monitor, started 139855979853568)>']
[2026-02-08 17:16:05] 2026-02-08 17:16:05,402 | INFO     | PID=1665355 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 17:16:05] 2026-02-08 17:16:05,402 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 17:16:05] 2026-02-08 17:16:05,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 17:16:05] 2026-02-08 17:16:05,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 17:16:05] 2026-02-08 17:16:05,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 17:16:05] 2026-02-08 17:16:05,403 | INFO     | [monitor] control thread has ended
[2026-02-08 17:16:05] 2026-02-08 17:16:05,619 | INFO     | all workflow threads have been joined
[2026-02-08 17:16:05] 2026-02-08 17:16:05,619 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 17:16:05] 2026-02-08 17:16:05,620 | INFO     | traces error code: 0
[2026-02-08 17:16:05] 2026-02-08 17:16:05,620 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 17:16:05] 2026-02-08 17:16:05,667 [wrapper] ==== pilot stdout END ====
[2026-02-08 17:16:05] 2026-02-08 17:16:05,669 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 17:16:05] 2026-02-08 17:16:05,670 [wrapper] pilotpid: 1665355
[2026-02-08 17:16:05] 2026-02-08 17:16:05,672 [wrapper] Pilot exit status: 0
[2026-02-08 17:16:05] 2026-02-08 17:16:05,678 [wrapper] pandaids: 7000836359
[2026-02-08 17:16:05] 2026-02-08 17:16:05,697 [wrapper] cleanup supervisor_pilot 1714041 1665356
[2026-02-08 17:16:05] 2026-02-08 17:16:05,699 [wrapper] Test setup, not cleaning
[2026-02-08 17:16:05] 2026-02-08 17:16:05,700 [wrapper] apfmon messages muted
[2026-02-08 17:16:05] 2026-02-08 17:16:05,702 [wrapper] ==== wrapper stdout END ====
[2026-02-08 17:16:05] 2026-02-08 17:16:05,703 [wrapper] ==== wrapper stderr END ====
[2026-02-08 17:16:05]  *** Error codes and diagnostics ***
[2026-02-08 17:16:05]     "exeErrorCode": 0,
[2026-02-08 17:16:05]     "exeErrorDiag": "",
[2026-02-08 17:16:05]     "pilotErrorCode": 0,
[2026-02-08 17:16:05]     "pilotErrorDiag": "",
[2026-02-08 17:16:05]  *** Listing of results directory ***
[2026-02-08 17:16:05] total 890000
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc    584627 Feb  7 18:32 pilot3.tar.gz
[2026-02-08 17:16:05] -rwx------ 1 boinc boinc     36322 Feb  7 18:34 runpilot2-wrapper.sh
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc      5111 Feb  7 18:35 queuedata.json
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc       100 Feb  8 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 17:16:05] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 16:20 run_atlas
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc       105 Feb  8 16:20 job.xml
[2026-02-08 17:16:05] -rw-r--r-- 2 boinc boinc 648940846 Feb  8 16:20 EVNT.48431111._000118.pool.root.1
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc      9656 Feb  8 16:20 init_data.xml
[2026-02-08 17:16:05] drwxrwx--x 2 boinc boinc      4096 Feb  8 16:20 shared
[2026-02-08 17:16:05] -rw-r--r-- 2 boinc boinc    597953 Feb  8 16:20 input.tar.gz
[2026-02-08 17:16:05] -rw-r--r-- 2 boinc boinc     15845 Feb  8 16:20 start_atlas.sh
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc         0 Feb  8 16:20 boinc_lockfile
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc      2545 Feb  8 16:20 pandaJob.out
[2026-02-08 17:16:05] -rw------- 1 boinc boinc   1009488 Feb  8 16:20 agis_schedconf.cvmfs.json
[2026-02-08 17:16:05] -rw------- 1 boinc boinc   1513088 Feb  8 16:20 agis_ddmendpoints.agis.ALL.json
[2026-02-08 17:16:05] -rw------- 1 boinc boinc       422 Feb  8 16:20 workernode_map.json
[2026-02-08 17:16:05] drwx------ 5 boinc boinc      4096 Feb  8 16:20 pilot3
[2026-02-08 17:16:05] -rw------- 1 boinc boinc 256687273 Feb  8 17:15 HITS.48431113._005966.pool.root.1
[2026-02-08 17:16:05] -rw------- 1 boinc boinc        95 Feb  8 17:15 pilot_heartbeat.json
[2026-02-08 17:16:05] -rw------- 1 boinc boinc      1011 Feb  8 17:15 memory_monitor_summary.json
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc       530 Feb  8 17:15 boinc_task_state.xml
[2026-02-08 17:16:05] -rw------- 1 boinc boinc    395147 Feb  8 17:15 log.48431113._005966.job.log.tgz.1
[2026-02-08 17:16:05] -rw------- 1 boinc boinc      6283 Feb  8 17:15 heartbeat.json
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc      8192 Feb  8 17:16 boinc_mmap_file
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc        27 Feb  8 17:16 wrapper_checkpoint.txt
[2026-02-08 17:16:05] -rw------- 1 boinc boinc      4752 Feb  8 17:16 pilotlog.txt
[2026-02-08 17:16:05] -rw------- 1 boinc boinc    498571 Feb  8 17:16 log.48431113._005966.job.log.1
[2026-02-08 17:16:05] -rw------- 1 boinc boinc       357 Feb  8 17:16 output.list
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc       620 Feb  8 17:16 runtime_log
[2026-02-08 17:16:05] -rw------- 1 boinc boinc    911360 Feb  8 17:16 result.tar.gz
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc      8910 Feb  8 17:16 runtime_log.err
[2026-02-08 17:16:05] -rw------- 1 boinc boinc       649 Feb  8 17:16 0JMLDmTJ288n9Rq4apOajLDm4fhM0noT9bVooX4SDmVSbKDmQcojYn.diag
[2026-02-08 17:16:05] -rw-r--r-- 1 boinc boinc     21525 Feb  8 17:16 stderr.txt
[2026-02-08 17:16:05] HITS file was successfully produced:
[2026-02-08 17:16:05] -rw------- 1 boinc boinc 256687273 Feb  8 17:15 shared/HITS.pool.root.1
[2026-02-08 17:16:05]  *** Contents of shared directory: ***
[2026-02-08 17:16:05] total 885904
[2026-02-08 17:16:05] -rw-r--r-- 2 boinc boinc 648940846 Feb  8 16:20 ATLAS.root_0
[2026-02-08 17:16:05] -rw-r--r-- 2 boinc boinc    597953 Feb  8 16:20 input.tar.gz
[2026-02-08 17:16:05] -rw-r--r-- 2 boinc boinc     15845 Feb  8 16:20 start_atlas.sh
[2026-02-08 17:16:05] -rw------- 1 boinc boinc 256687273 Feb  8 17:15 HITS.pool.root.1
[2026-02-08 17:16:05] -rw------- 1 boinc boinc    911360 Feb  8 17:16 result.tar.gz
17:16:06 (1661139): run_atlas exited; CPU time 36778.437672
17:16:06 (1661139): called boinc_finish(0)

</stderr_txt>
]]>

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