Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:33:34 (19339): wrapper (7.7.26015): starting
12:33:34 (19339): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 12:33:34] Arguments: --nthreads 12
[2026-02-07 12:33:34] Threads: 12
[2026-02-07 12:33:34] Checking for CVMFS
[2026-02-07 12:33:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 12:33:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 12:33:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 12:33:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 12:33:35] 2.11.2.0 28623 385731 98120 155991 3 51 19327674 20275201 1 130560 4 167405532 99.948 22555321 16845 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-07 12:33:35] CVMFS is ok
[2026-02-07 12:33:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 12:33:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 12:33:35] Further information can be found at the LHC@home message board.
[2026-02-07 12:33:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 12:33:35] Checking for apptainer binary...
[2026-02-07 12:33:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 12:33:35] Running /usr/bin/apptainer --version
[2026-02-07 12:33:35] apptainer version 1.3.2-1.el7
[2026-02-07 12:33:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 12:33:37] c-205-20.aglt2.org
[2026-02-07 12:33:37] apptainer works
[2026-02-07 12:33:37] Set ATHENA_PROC_NUMBER=12
[2026-02-07 12:33:37] Set ATHENA_CORE_NUMBER=12
[2026-02-07 12:33:37] Starting ATLAS job with PandaID=7000624464
[2026-02-07 12:33:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 13:45:09]  *** The last 200 lines of the pilot log: ***
[2026-02-07 13:45:09]  guid=86ad4285-91da-473e-b153-17ea49c45763
[2026-02-07 13:45:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-07 13:45:09]  is_altstaged=None
[2026-02-07 13:45:09]  is_tar=False
[2026-02-07 13:45:09]  lfn=log.48442098._004163.job.log.tgz.1
[2026-02-07 13:45:09]  mtime=0
[2026-02-07 13:45:09]  protocol_id=None
[2026-02-07 13:45:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 13:45:09]  replicas=None
[2026-02-07 13:45:09]  scope=mc23_13p6TeV
[2026-02-07 13:45:09]  status=None
[2026-02-07 13:45:09]  status_code=0
[2026-02-07 13:45:09]  storage_token=
[2026-02-07 13:45:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7000624464/log.48442098._004163.job.log.tgz.1
[2026-02-07 13:45:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/ec/log.48442098._004163.job.log.tgz.1
[2026-02-07 13:45:09]  workdir=None
[2026-02-07 13:45:09] ]
[2026-02-07 13:45:09] 2026-02-07 18:44:34,089 | INFO     | transferring file log.48442098._004163.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7000624464/log.48442098._004163.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-07 13:45:09] 2026-02-07 18:44:34,089 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7000624464/log.48442098._004163.job.log.tgz.1 /tmp/boinchome/slots/0/log.48442098._004163.job
[2026-02-07 13:45:09] 2026-02-07 18:44:34,110 | INFO     | adding to output.list: log.48442098._004163.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/ec/log.48442098._004163.job.log.tg
[2026-02-07 13:45:09] 2026-02-07 18:44:34,111 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 13:45:09] 2026-02-07 18:44:34,111 | INFO     | summary of transferred files:
[2026-02-07 13:45:09] 2026-02-07 18:44:34,112 | INFO     |  -- lfn=log.48442098._004163.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 13:45:09] 2026-02-07 18:44:34,112 | INFO     | stage-out finished correctly
[2026-02-07 13:45:09] 2026-02-07 18:44:34,581 | INFO     | PID=23330 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 13:45:09] 2026-02-07 18:44:34,589 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 13:45:09] 2026-02-07 18:44:34,930 | INFO     | job 7000624464 has state=finished
[2026-02-07 13:45:09] 2026-02-07 18:44:34,930 | INFO     | preparing for final server update for job 7000624464 in state='finished'
[2026-02-07 13:45:09] 2026-02-07 18:44:34,931 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7000624464/jobReport.json
[2026-02-07 13:45:09] 2026-02-07 18:44:34,934 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-07 13:45:09] 2026-02-07 18:44:34,935 | INFO     | this job has now completed (state=finished)
[2026-02-07 13:45:09] 2026-02-07 18:44:34,935 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 13:45:09] 2026-02-07 18:44:34,935 | INFO     | log transfer has been attempted: DONE
[2026-02-07 13:45:09] 2026-02-07 18:44:34,935 | INFO     | job 7000624464 has finished - writing final server update
[2026-02-07 13:45:09] 2026-02-07 18:44:34,936 | INFO     | total number of processed events: 400 (read)
[2026-02-07 13:45:09] 2026-02-07 18:44:34,938 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7000624464/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 13:45:09] 2026-02-07 18:44:34,939 | INFO     | extracted standard info from prmon json
[2026-02-07 13:45:09] 2026-02-07 18:44:34,939 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 13:45:09] 2026-02-07 18:44:34,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 13:45:09] 2026-02-07 18:44:34,939 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 13:45:09] 2026-02-07 18:44:34,939 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 13:45:09] 2026-02-07 18:44:34,940 | INFO     | fitting pss+swap vs Time
[2026-02-07 13:45:09] 2026-02-07 18:44:34,941 | INFO     | sum of square deviations: 73882315.5
[2026-02-07 13:45:09] 2026-02-07 18:44:34,941 | INFO     | sum of deviations: -6540710726.0
[2026-02-07 13:45:09] 2026-02-07 18:44:34,941 | INFO     | mean x: 1770487826.5
[2026-02-07 13:45:09] 2026-02-07 18:44:34,941 | INFO     | mean y: 2816093.193548387
[2026-02-07 13:45:09] 2026-02-07 18:44:34,941 | INFO     | intersect: 156741930706.36478
[2026-02-07 13:45:09] 2026-02-07 18:44:34,941 | INFO     | chi2: 0.08750319168172266
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | current memory leak: -88.53 B/s (using 62 data points, chi2=0.09)
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | could have reported an average CPU frequency of 1773 MHz (6 samples)
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | ..............................
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | . Timing measurements:
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | . get job = 0 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | . initial setup = 7 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,942 | INFO     | . payload setup = 7 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,943 | INFO     | . stage-in = 0 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,943 | INFO     | . payload execution = 4214 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,943 | INFO     | . stage-out = 0 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,943 | INFO     | . log creation = 0 s
[2026-02-07 13:45:09] 2026-02-07 18:44:34,943 | INFO     | ..............................
[2026-02-07 13:45:09] 2026-02-07 18:44:35,020 | INFO     | 
[2026-02-07 13:45:09] 2026-02-07 18:44:35,020 | INFO     | job summary report
[2026-02-07 13:45:09] 2026-02-07 18:44:35,020 | INFO     | --------------------------------------------------
[2026-02-07 13:45:09] 2026-02-07 18:44:35,020 | INFO     | PanDA job id: 7000624464
[2026-02-07 13:45:09] 2026-02-07 18:44:35,020 | INFO     | task id: 48442098
[2026-02-07 13:45:09] 2026-02-07 18:44:35,021 | INFO     | errors: (none)
[2026-02-07 13:45:09] 2026-02-07 18:44:35,021 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 13:45:09] 2026-02-07 18:44:35,021 | INFO     | pilot state: finished 
[2026-02-07 13:45:09] 2026-02-07 18:44:35,021 | INFO     | transexitcode: 0
[2026-02-07 13:45:09] 2026-02-07 18:44:35,021 | INFO     | exeerrorcode: 0
[2026-02-07 13:45:09] 2026-02-07 18:44:35,021 | INFO     | exeerrordiag: 
[2026-02-07 13:45:09] 2026-02-07 18:44:35,022 | INFO     | exitcode: 0
[2026-02-07 13:45:09] 2026-02-07 18:44:35,022 | INFO     | exitmsg: OK
[2026-02-07 13:45:09] 2026-02-07 18:44:35,022 | INFO     | cpuconsumptiontime: 45197 s
[2026-02-07 13:45:09] 2026-02-07 18:44:35,022 | INFO     | nevents: 400
[2026-02-07 13:45:09] 2026-02-07 18:44:35,022 | INFO     | neventsw: 0
[2026-02-07 13:45:09] 2026-02-07 18:44:35,022 | INFO     | pid: 27753
[2026-02-07 13:45:09] 2026-02-07 18:44:35,023 | INFO     | pgrp: 27753
[2026-02-07 13:45:09] 2026-02-07 18:44:35,023 | INFO     | corecount: 12
[2026-02-07 13:45:09] 2026-02-07 18:44:35,023 | INFO     | event service: False
[2026-02-07 13:45:09] 2026-02-07 18:44:35,023 | INFO     | sizes: {0: 2282890, 1: 2283096, 11: 2283124, 4224: 2309018, 4225: 2318016, 4226: 2318394}
[2026-02-07 13:45:09] 2026-02-07 18:44:35,023 | INFO     | --------------------------------------------------
[2026-02-07 13:45:09] 2026-02-07 18:44:35,023 | INFO     | 
[2026-02-07 13:45:09] 2026-02-07 18:44:35,024 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-07 13:45:09] 2026-02-07 18:44:35,048 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,048 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,048 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,048 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,050 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,050 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,051 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 13:45:09] 2026-02-07 18:44:35,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,051 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 13:45:09] 2026-02-07 18:44:35,051 | INFO     | job 7000624464 has completed (purged errors)
[2026-02-07 13:45:09] 2026-02-07 18:44:35,051 | INFO     | overall cleanup function is called
[2026-02-07 13:45:09] 2026-02-07 18:44:36,060 | INFO     | --- collectZombieJob: --- 10, [27753]
[2026-02-07 13:45:09] 2026-02-07 18:44:36,060 | INFO     | zombie collector waiting for pid 27753
[2026-02-07 13:45:09] 2026-02-07 18:44:36,060 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 13:45:09] 2026-02-07 18:44:36,061 | INFO     | collected zombie processes
[2026-02-07 13:45:09] 2026-02-07 18:44:36,061 | INFO     | will attempt to kill all subprocesses of pid=27753
[2026-02-07 13:45:09] 2026-02-07 18:44:36,206 | WARNING  | process 27753 can no longer be monitored (due to stat problems) - aborting
[2026-02-07 13:45:09] 2026-02-07 18:44:36,245 | INFO     | process IDs to be killed: [27753] (in reverse order)
[2026-02-07 13:45:09] 2026-02-07 18:44:36,294 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 13:45:09] 2026-02-07 18:44:36,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 13:45:09] 2026-02-07 18:44:36,303 | INFO     | did not find any defunct processes belonging to 27753
[2026-02-07 13:45:09] 2026-02-07 18:44:36,312 | INFO     | did not find any defunct processes belonging to 27753
[2026-02-07 13:45:09] 2026-02-07 18:44:36,312 | INFO     | ready for new job
[2026-02-07 13:45:09] 2026-02-07 18:44:36,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 13:45:09] 2026-02-07 18:44:36,314 | INFO     | **************************************
[2026-02-07 13:45:09] 2026-02-07 18:44:36,314 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 13:45:09] 2026-02-07 18:44:36,314 | INFO     | **************************************
[2026-02-07 13:45:09] 2026-02-07 18:44:36,314 | INFO     | 
[2026-02-07 13:45:09] 2026-02-07 18:44:36,315 | INFO     | architecture information:
[2026-02-07 13:45:09] 2026-02-07 18:44:36,316 | INFO     | executing command: cat /etc/os-release
[2026-02-07 13:45:09] 2026-02-07 18:44:36,325 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 13:45:09] 2026-02-07 18:44:36,331 | INFO     | cat /etc/os-release:
[2026-02-07 13:45:09] NAME="CentOS Linux"
[2026-02-07 13:45:09] VERSION="7 (Core)"
[2026-02-07 13:45:09] ID="centos"
[2026-02-07 13:45:09] ID_LIKE="rhel fedora"
[2026-02-07 13:45:09] VERSION_ID="7"
[2026-02-07 13:45:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 13:45:09] ANSI_COLOR="0;31"
[2026-02-07 13:45:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 13:45:09] HOME_URL="https://www.centos.org/"
[2026-02-07 13:45:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 13:45:09] 
[2026-02-07 13:45:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 13:45:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 13:45:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 13:45:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 13:45:09] 
[2026-02-07 13:45:09] 2026-02-07 18:44:36,331 | INFO     | **************************************
[2026-02-07 13:45:09] 2026-02-07 18:44:36,412 | INFO     | number of running child processes to parent process 27753: 1
[2026-02-07 13:45:09] 2026-02-07 18:44:36,413 | INFO     | maximum number of monitored processes: 6
[2026-02-07 13:45:09] 2026-02-07 18:44:36,413 | INFO     | aborting job monitoring since job object (job id=7000624464) has expired
[2026-02-07 13:45:09] 2026-02-07 18:44:36,834 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-07 13:45:09] 2026-02-07 18:44:36,852 | INFO     | sufficient remaining disk space (28807528448 B)
[2026-02-07 13:45:09] 2026-02-07 18:44:36,853 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 13:45:09] 2026-02-07 18:44:36,853 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 13:45:09] 2026-02-07 18:44:36,853 | INFO     | update_server=False
[2026-02-07 13:45:09] 2026-02-07 18:44:36,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 13:45:09] 2026-02-07 18:44:36,854 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 13:45:09] 2026-02-07 18:44:36,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 13:45:09] 2026-02-07 18:44:36,854 | INFO     | will abort loop
[2026-02-07 13:45:09] 2026-02-07 18:44:36,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 13:45:09] 2026-02-07 18:44:37,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 13:45:09] 2026-02-07 18:44:37,347 | INFO     | all data control threads have been joined
[2026-02-07 13:45:09] 2026-02-07 18:44:37,664 | INFO     | all job control threads have been joined
[2026-02-07 13:45:09] 2026-02-07 18:44:37,673 | INFO     | all payload control threads have been joined
[2026-02-07 13:45:09] 2026-02-07 18:44:37,859 | INFO     | [job] retrieve thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:37,859 | INFO     | [job] queue monitor thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:37,860 | INFO     | [job] job monitor thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:38,318 | INFO     | [payload] failed_post thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:38,352 | INFO     | [data] control thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:38,669 | INFO     | [job] control thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:38,678 | INFO     | [payload] control thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:38,772 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:38,935 | INFO     | [job] validate thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:39,077 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:39,103 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:39,155 | INFO     | [payload] validate_post thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:39,205 | INFO     | [data] copytool_out thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:39,325 | INFO     | [data] copytool_in thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:40,861 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:44:47,546 | INFO     | job.realtimelogging is not enabled
[2026-02-07 13:45:09] 2026-02-07 18:44:48,551 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 13:45:09] 2026-02-07 18:45:03,927 | INFO     | [monitor] cgroup control has ended
[2026-02-07 13:45:09] 2026-02-07 18:45:04,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413723981632)>', '<ExcThread(monitor, started 140413497263872)>']
[2026-02-07 13:45:09] 2026-02-07 18:45:06,762 | INFO     | PID=23330 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 13:45:09] 2026-02-07 18:45:06,763 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 13:45:09] 2026-02-07 18:45:06,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 13:45:09] 2026-02-07 18:45:06,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 13:45:09] 2026-02-07 18:45:06,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 13:45:09] 2026-02-07 18:45:06,763 | INFO     | [monitor] control thread has ended
[2026-02-07 13:45:09] 2026-02-07 18:45:09,220 | INFO     | all workflow threads have been joined
[2026-02-07 13:45:09] 2026-02-07 18:45:09,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 13:45:09] 2026-02-07 18:45:09,221 | INFO     | traces error code: 0
[2026-02-07 13:45:09] 2026-02-07 18:45:09,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 13:45:09] 2026-02-07 18:45:09,311 [wrapper] ==== pilot stdout END ====
[2026-02-07 13:45:09] 2026-02-07 18:45:09,315 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 13:45:09] 2026-02-07 18:45:09,318 [wrapper] pilotpid: 23330
[2026-02-07 13:45:09] 2026-02-07 18:45:09,322 [wrapper] Pilot exit status: 0
[2026-02-07 13:45:09] 2026-02-07 18:45:09,337 [wrapper] pandaids: 7000624464
[2026-02-07 13:45:09] 2026-02-07 18:45:09,377 [wrapper] cleanup supervisor_pilot 13724 23331
[2026-02-07 13:45:09] 2026-02-07 18:45:09,381 [wrapper] Test setup, not cleaning
[2026-02-07 13:45:09] 2026-02-07 18:45:09,385 [wrapper] apfmon messages muted
[2026-02-07 13:45:09] 2026-02-07 18:45:09,388 [wrapper] ==== wrapper stdout END ====
[2026-02-07 13:45:09] 2026-02-07 18:45:09,392 [wrapper] ==== wrapper stderr END ====
[2026-02-07 13:45:09]  *** Error codes and diagnostics ***
[2026-02-07 13:45:09]     "exeErrorCode": 0,
[2026-02-07 13:45:09]     "exeErrorDiag": "",
[2026-02-07 13:45:09]     "pilotErrorCode": 0,
[2026-02-07 13:45:09]     "pilotErrorDiag": "",
[2026-02-07 13:45:09]  *** Listing of results directory ***
[2026-02-07 13:45:09] total 666720
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas    584627 Feb  7 06:17 pilot3.tar.gz
[2026-02-07 13:45:09] -rwx------ 1 boincer umatlas     36322 Feb  7 06:20 runpilot2-wrapper.sh
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas      5111 Feb  7 06:24 queuedata.json
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas       100 Feb  7 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 13:45:09] -rwxr-xr-x 1 boincer umatlas      7986 Feb  7 12:33 run_atlas
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas       105 Feb  7 12:33 job.xml
[2026-02-07 13:45:09] -rw-r--r-- 2 boincer umatlas 492895540 Feb  7 12:33 EVNT.48442096._000083.pool.root.1
[2026-02-07 13:45:09] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 12:33 start_atlas.sh
[2026-02-07 13:45:09] drwxrwx--x 2 boincer umatlas      4096 Feb  7 12:33 shared
[2026-02-07 13:45:09] -rw-r--r-- 2 boincer umatlas    597963 Feb  7 12:33 input.tar.gz
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas         0 Feb  7 12:33 boinc_lockfile
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas      2530 Feb  7 12:33 pandaJob.out
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas        57 Feb  7 12:33 setup.sh.local
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas   1009494 Feb  7 12:33 agis_schedconf.cvmfs.json
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas   1513088 Feb  7 12:33 agis_ddmendpoints.agis.ALL.json
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas       445 Feb  7 12:33 workernode_map.json
[2026-02-07 13:45:09] drwx------ 5 boincer umatlas      4096 Feb  7 12:33 pilot3
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas      5953 Feb  7 13:39 init_data.xml
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas 183809134 Feb  7 13:44 HITS.48442098._004163.pool.root.1
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas       530 Feb  7 13:44 boinc_task_state.xml
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas      1057 Feb  7 13:44 memory_monitor_summary.json
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas    417773 Feb  7 13:44 log.48442098._004163.job.log.tgz.1
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas      6421 Feb  7 13:44 heartbeat.json
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas        27 Feb  7 13:44 wrapper_checkpoint.txt
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas      8192 Feb  7 13:44 boinc_mmap_file
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas        95 Feb  7 13:45 pilot_heartbeat.json
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas      5219 Feb  7 13:45 pilotlog.txt
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas    620125 Feb  7 13:45 log.48442098._004163.job.log.1
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas       357 Feb  7 13:45 output.list
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas       620 Feb  7 13:45 runtime_log
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas   1054720 Feb  7 13:45 result.tar.gz
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas      9343 Feb  7 13:45 runtime_log.err
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas       659 Feb  7 13:45 Nd8MDmAYv88n9Rq4apOajLDm4fhM0noT9bVooX4SDmBvaKDmTWNBcm.diag
[2026-02-07 13:45:09] -rw-r--r-- 1 boincer umatlas     21457 Feb  7 13:45 stderr.txt
[2026-02-07 13:45:09] HITS file was successfully produced:
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas 183809134 Feb  7 13:44 shared/HITS.pool.root.1
[2026-02-07 13:45:09]  *** Contents of shared directory: ***
[2026-02-07 13:45:09] total 662484
[2026-02-07 13:45:09] -rw-r--r-- 2 boincer umatlas 492895540 Feb  7 12:33 ATLAS.root_0
[2026-02-07 13:45:09] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 12:33 start_atlas.sh
[2026-02-07 13:45:09] -rw-r--r-- 2 boincer umatlas    597963 Feb  7 12:33 input.tar.gz
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas 183809134 Feb  7 13:44 HITS.pool.root.1
[2026-02-07 13:45:09] -rw------- 1 boincer umatlas   1054720 Feb  7 13:45 result.tar.gz
13:45:10 (19339): run_atlas exited; CPU time 45178.636133
13:45:10 (19339): called boinc_finish(0)

</stderr_txt>
]]>

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