Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:37:43 (859026): wrapper (7.7.26015): starting
13:37:43 (859026): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 13:37:43] Arguments: --nthreads 12
[2026-02-07 13:37:43] Threads: 12
[2026-02-07 13:37:43] Checking for CVMFS
[2026-02-07 13:37:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 13:37:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 13:37:43] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 13:37:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 13:37:44] 2.11.5.0 444197 98859 237640 155996 0 570 29676120 45568000 30463 130560 0 851310294 99.800 510926332 18746 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-02-07 13:37:44] CVMFS is ok
[2026-02-07 13:37:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 13:37:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 13:37:44] Further information can be found at the LHC@home message board.
[2026-02-07 13:37:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 13:37:44] Checking for apptainer binary...
[2026-02-07 13:37:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 13:37:44] Running /usr/bin/apptainer --version
[2026-02-07 13:37:44] apptainer version 1.4.1-1.el9
[2026-02-07 13:37:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 13:37:44] wns0087.triumf.lcg
[2026-02-07 13:37:44] apptainer works
[2026-02-07 13:37:44] Set ATHENA_PROC_NUMBER=12
[2026-02-07 13:37:44] Set ATHENA_CORE_NUMBER=12
[2026-02-07 13:37:45] Starting ATLAS job with PandaID=7000834335
[2026-02-07 13:37:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 13:43:24]  *** The last 200 lines of the pilot log: ***
[2026-02-07 13:43:24] 2026-02-07 21:42:28,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 13:43:24] 2026-02-07 21:42:28,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | WARNING  | wrong length of table data, x=[1770500354.0, 1770500415.0], y=[1525.0, 464999.0] (must be same and length>=4)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | INFO     | could have reported an average CPU frequency of 2666 MHz (4 samples)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | INFO     | ..............................
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . Timing measurements:
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . get job = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . initial setup = 12 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . payload setup = 26 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . stage-in = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . payload execution = 87 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . stage-out = 1 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . log creation = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | ..............................
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7000834335/pilotlog.txt
[2026-02-07 13:43:24] 2026-02-07 21:42:28,299 | INFO     | time since job start (252s) is within the limit (349056.0s)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,420 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-07 13:43:24] - Log from pilotlog.txt -
[2026-02-07 13:43:24] 2026-02-07 21:42:28,142 | INFO     | extracted standard info from prmon json
[2026-02-07 13:43:24] 2026-02-07 21:42:28,142 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 13:43:24] 2026-02-07 21:42:28,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 13:43:24] 2026-02-07 21:42:28,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 13:43:24] 2026-02-07 21:42:28,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | WARNING  | wrong length of table data, x=[1770500354.0, 1770500415.0], y=[1525.0, 464999.0] (must be same and length>=4)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | INFO     | could have reported an average CPU frequency of 2666 MHz (4 samples)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | INFO     | ..............................
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . Timing measurements:
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . get job = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . initial setup = 12 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . payload setup = 26 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . stage-in = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . payload execution = 87 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . stage-out = 1 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . log creation = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | ..............................
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7000834335/pilotlog.txt
[2026-02-07 13:43:24] 2026-02-07 21:42:28,299 | INFO     | time since job start (252s) is within the limit (349056.0s)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,420 | WARNING  | 
[2026-02-07 13:43:24] [begin log extracts]
[2026-02-07 13:43:24] - Log from pilotlog.txt -
[2026-02-07 13:43:24] 2026-02-07 21:42:28,142 | INFO     | extracted standard info from prmon json
[2026-02-07 13:43:24] 2026-02-07 21:42:28,142 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 13:43:24] 2026-02-07 21:42:28,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 13:43:24] 2026-02-07 21:42:28,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 13:43:24] 2026-02-07 21:42:28,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | WARNING  | wrong length of table data, x=[1770500354.0, 1770500415.0], y=[1525.0, 464999.0] (must be same and length>=4)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | INFO     | could have reported an average CPU frequency of 2666 MHz (4 samples)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,147 | INFO     | ..............................
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . Timing measurements:
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . get job = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . initial setup = 12 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . payload setup = 26 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . stage-in = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . payload execution = 87 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . stage-out = 1 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | . log creation = 0 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | ..............................
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-07 13:43:24] 2026-02-07 21:42:28,148 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7000834335/pilotlog.txt
[2026-02-07 13:43:24] 2026-02-07 21:42:28,299 | INFO     | time since job start (252s) is within the limit (349056.0s)
[2026-02-07 13:43:24] [end log extracts]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,420 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,421 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-02-07 13:43:24] 2026-02-07 21:42:28,558 | INFO     | 
[2026-02-07 13:43:24] 2026-02-07 21:42:28,558 | INFO     | job summary report
[2026-02-07 13:43:24] 2026-02-07 21:42:28,559 | INFO     | --------------------------------------------------
[2026-02-07 13:43:24] 2026-02-07 21:42:28,559 | INFO     | PanDA job id: 7000834335
[2026-02-07 13:43:24] 2026-02-07 21:42:28,559 | INFO     | task id: 48442098
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-07 13:40:15,712 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | pilot state: failed 
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | transexitcode: 65
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | exeerrorcode: 65
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | exitcode: 65
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | cpuconsumptiontime: 14 s
[2026-02-07 13:43:24] 2026-02-07 21:42:28,562 | INFO     | nevents: 0
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | neventsw: 0
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | pid: 868153
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | pgrp: 868153
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | corecount: 12
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | event service: False
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | sizes: {0: 2282657, 1: 2283118, 12: 2283118, 117: 2306435, 120: 2310727, 122: 2310755, 240: 2311049}
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | --------------------------------------------------
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | 
[2026-02-07 13:43:24] 2026-02-07 21:42:28,563 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-02-07 13:43:24] 2026-02-07 21:42:28,727 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,729 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,729 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 13:43:24] 2026-02-07 21:42:28,729 | INFO     | job 7000834335 has completed (purged errors)
[2026-02-07 13:43:24] 2026-02-07 21:42:28,729 | INFO     | overall cleanup function is called
[2026-02-07 13:43:24] 2026-02-07 21:42:29,736 | INFO     | --- collectZombieJob: --- 10, [868153]
[2026-02-07 13:43:24] 2026-02-07 21:42:29,736 | INFO     | zombie collector waiting for pid 868153
[2026-02-07 13:43:24] 2026-02-07 21:42:29,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 13:43:24] 2026-02-07 21:42:29,736 | INFO     | collected zombie processes
[2026-02-07 13:43:24] 2026-02-07 21:42:29,736 | INFO     | will attempt to kill all subprocesses of pid=868153
[2026-02-07 13:43:24] 2026-02-07 21:42:30,345 | INFO     | process IDs to be killed: [868153] (in reverse order)
[2026-02-07 13:43:24] 2026-02-07 21:42:30,435 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 13:43:24] 2026-02-07 21:42:30,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 13:43:24] 2026-02-07 21:42:30,529 | INFO     | did not find any defunct processes belonging to 868153
[2026-02-07 13:43:24] 2026-02-07 21:42:30,587 | INFO     | did not find any defunct processes belonging to 868153
[2026-02-07 13:43:24] 2026-02-07 21:42:30,587 | INFO     | ready for new job
[2026-02-07 13:43:24] 2026-02-07 21:42:30,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 13:43:24] 2026-02-07 21:42:30,588 | INFO     | **************************************
[2026-02-07 13:43:24] 2026-02-07 21:42:30,588 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 13:43:24] 2026-02-07 21:42:30,588 | INFO     | **************************************
[2026-02-07 13:43:24] 2026-02-07 21:42:30,588 | INFO     | 
[2026-02-07 13:43:24] 2026-02-07 21:42:30,610 | INFO     | architecture information:
[2026-02-07 13:43:24] 2026-02-07 21:42:30,635 | INFO     | executing command: cat /etc/os-release
[2026-02-07 13:43:24] 2026-02-07 21:42:30,674 | INFO     | cat /etc/os-release:
[2026-02-07 13:43:24] NAME="CentOS Linux"
[2026-02-07 13:43:24] VERSION="7 (Core)"
[2026-02-07 13:43:24] ID="centos"
[2026-02-07 13:43:24] ID_LIKE="rhel fedora"
[2026-02-07 13:43:24] VERSION_ID="7"
[2026-02-07 13:43:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 13:43:24] ANSI_COLOR="0;31"
[2026-02-07 13:43:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 13:43:24] HOME_URL="https://www.centos.org/"
[2026-02-07 13:43:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 13:43:24] 
[2026-02-07 13:43:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 13:43:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 13:43:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 13:43:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 13:43:24] 
[2026-02-07 13:43:24] 2026-02-07 21:42:30,674 | INFO     | **************************************
[2026-02-07 13:43:24] 2026-02-07 21:42:31,179 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-02-07 13:43:24] 2026-02-07 21:42:31,217 | INFO     | sufficient remaining disk space (2069682454528 B)
[2026-02-07 13:43:24] 2026-02-07 21:42:31,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 13:43:24] 2026-02-07 21:42:31,218 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 13:43:24] 2026-02-07 21:42:31,218 | INFO     | update_server=False
[2026-02-07 13:43:24] 2026-02-07 21:42:31,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 13:43:24] 2026-02-07 21:42:31,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 13:43:24] 2026-02-07 21:42:31,223 | INFO     | aborting loop
[2026-02-07 13:43:24] 2026-02-07 21:42:31,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 13:43:24] 2026-02-07 21:42:32,075 | INFO     | all data control threads have been joined
[2026-02-07 13:43:24] 2026-02-07 21:42:32,224 | INFO     | [job] retrieve thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:32,228 | INFO     | [job] job monitor thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:32,250 | INFO     | [payload] failed_post thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:32,263 | INFO     | [payload] validate_post thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:32,479 | INFO     | all payload control threads have been joined
[2026-02-07 13:43:24] 2026-02-07 21:42:32,908 | INFO     | all job control threads have been joined
[2026-02-07 13:43:24] 2026-02-07 21:42:33,081 | INFO     | [data] control thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,094 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,094 | INFO     | [job] validate thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,117 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,189 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,244 | INFO     | [data] copytool_out thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,468 | INFO     | [data] copytool_in thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,485 | INFO     | [payload] control thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:33,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 13:43:24] 2026-02-07 21:42:33,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 13:43:24] 2026-02-07 21:42:33,914 | INFO     | [job] control thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:34,599 | INFO     | [job] queue monitor thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:42:37,617 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 13:43:24] 2026-02-07 21:43:01,724 | INFO     | PID=862980 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-07 13:43:24] 2026-02-07 21:43:01,724 | INFO     | .. there are 42 such processes running
[2026-02-07 13:43:24] 2026-02-07 21:43:01,724 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 13:43:24] 2026-02-07 21:43:01,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 13:43:24] 2026-02-07 21:43:01,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 13:43:24] 2026-02-07 21:43:16,009 | INFO     | [monitor] cgroup control has ended
[2026-02-07 13:43:24] 2026-02-07 21:43:18,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066447361856)>', '<ExcThread(monitor, started 140065921558272)>']
[2026-02-07 13:43:24] 2026-02-07 21:43:18,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 13:43:24] 2026-02-07 21:43:18,837 | INFO     | [monitor] control thread has ended
[2026-02-07 13:43:24] 2026-02-07 21:43:23,041 | INFO     | all workflow threads have been joined
[2026-02-07 13:43:24] 2026-02-07 21:43:23,041 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 13:43:24] 2026-02-07 21:43:23,041 | INFO     | traces error code: 0
[2026-02-07 13:43:24] 2026-02-07 21:43:23,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 13:43:24] 2026-02-07 21:43:23,671 [wrapper] ==== pilot stdout END ====
[2026-02-07 13:43:24] 2026-02-07 21:43:23,682 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 13:43:24] 2026-02-07 21:43:23,695 [wrapper] pilotpid: 862980
[2026-02-07 13:43:24] 2026-02-07 21:43:23,723 [wrapper] Pilot exit status: 0
[2026-02-07 13:43:24] 2026-02-07 21:43:23,879 [wrapper] pandaids: 7000834335
[2026-02-07 13:43:24] 2026-02-07 21:43:24,292 [wrapper] cleanup supervisor_pilot  862986 862981
[2026-02-07 13:43:24] 2026-02-07 21:43:24,316 [wrapper] Test setup, not cleaning
[2026-02-07 13:43:24] 2026-02-07 21:43:24,338 [wrapper] apfmon messages muted
[2026-02-07 13:43:24] 2026-02-07 21:43:24,340 [wrapper] ==== wrapper stdout END ====
[2026-02-07 13:43:24] 2026-02-07 21:43:24,357 [wrapper] ==== wrapper stderr END ====
[2026-02-07 13:43:24]  *** Error codes and diagnostics ***
[2026-02-07 13:43:24]     "exeErrorCode": 65,
[2026-02-07 13:43:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-02-07 13:43:24]     "pilotErrorCode": 1305,
[2026-02-07 13:43:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-02-07 13:43:24]  *** Listing of results directory ***
[2026-02-07 13:43:24] total 483576
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc    584627 Feb  7 07:47 pilot3.tar.gz
[2026-02-07 13:43:24] -rwx------. 1 boinc boinc     36322 Feb  7 07:49 runpilot2-wrapper.sh
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc      5111 Feb  7 07:50 queuedata.json
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc       100 Feb  7 13:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 13:43:24] -rwxr-xr-x. 1 boinc boinc      7986 Feb  7 13:37 run_atlas
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc       105 Feb  7 13:37 job.xml
[2026-02-07 13:43:24] -rw-r--r--. 2 boinc boinc 491017173 Feb  7 13:37 EVNT.48442096._000093.pool.root.1
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc      6594 Feb  7 13:37 init_data.xml
[2026-02-07 13:43:24] -rw-r--r--. 2 boinc boinc     15845 Feb  7 13:37 start_atlas.sh
[2026-02-07 13:43:24] drwxrwx--x. 2 boinc boinc      4096 Feb  7 13:37 shared
[2026-02-07 13:43:24] -rw-r--r--. 2 boinc boinc    597958 Feb  7 13:37 input.tar.gz
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc         0 Feb  7 13:37 boinc_lockfile
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc      2528 Feb  7 13:37 pandaJob.out
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc   1009510 Feb  7 13:38 agis_schedconf.cvmfs.json
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc   1513088 Feb  7 13:38 agis_ddmendpoints.agis.ALL.json
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc       444 Feb  7 13:38 workernode_map.json
[2026-02-07 13:43:24] drwx------. 5 boinc boinc      4096 Feb  7 13:38 pilot3
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc       524 Feb  7 13:40 boinc_task_state.xml
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc      1005 Feb  7 13:40 memory_monitor_summary.json
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc     22427 Feb  7 13:40 log.48442098._004647.job.log.tgz.1
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc        95 Feb  7 13:42 pilot_heartbeat.json
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc      7049 Feb  7 13:42 heartbeat.json
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc      8192 Feb  7 13:43 boinc_mmap_file
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc      4818 Feb  7 13:43 pilotlog.txt
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc        23 Feb  7 13:43 wrapper_checkpoint.txt
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc     91005 Feb  7 13:43 log.48442098._004647.job.log.1
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc       188 Feb  7 13:43 output.list
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc       620 Feb  7 13:43 runtime_log
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc    133120 Feb  7 13:43 result.tar.gz
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc      8635 Feb  7 13:43 runtime_log.err
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc       643 Feb  7 13:43 HPuNDmKkz88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnfbKDmpFGMJm.diag
[2026-02-07 13:43:24] -rw-r--r--. 1 boinc boinc     21782 Feb  7 13:43 stderr.txt
[2026-02-07 13:43:24] No HITS result produced
[2026-02-07 13:43:24]  *** Contents of shared directory: ***
[2026-02-07 13:43:24] total 480244
[2026-02-07 13:43:24] -rw-r--r--. 2 boinc boinc 491017173 Feb  7 13:37 ATLAS.root_0
[2026-02-07 13:43:24] -rw-r--r--. 2 boinc boinc     15845 Feb  7 13:37 start_atlas.sh
[2026-02-07 13:43:24] -rw-r--r--. 2 boinc boinc    597958 Feb  7 13:37 input.tar.gz
[2026-02-07 13:43:24] -rw-------. 1 boinc boinc    133120 Feb  7 13:43 result.tar.gz
13:43:26 (859026): run_atlas exited; CPU time 21.915955
13:43:26 (859026): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN