Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:08:29 (1555423): wrapper (7.7.26015): starting
19:08:29 (1555423): wrapper: running run_atlas (--nthreads 4)
[2026-02-07 19:08:29] Arguments: --nthreads 4
[2026-02-07 19:08:29] Threads: 4
[2026-02-07 19:08:29] Checking for CVMFS
[2026-02-07 19:08:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 19:08:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 19:08:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 19:08:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 19:08:29] 2.13.1.0 667405 2201 68376 155991 0 188 5782744 10240001 1822 130560 0 2409798 99.993 85275 358 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-07 19:08:29] CVMFS is ok
[2026-02-07 19:08:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 19:08:29] Checking for apptainer binary...
[2026-02-07 19:08:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 19:08:29] Running /usr/bin/apptainer --version
[2026-02-07 19:08:29] apptainer version 1.4.5
[2026-02-07 19:08:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 19:08:29] atlas6l2
[2026-02-07 19:08:29] apptainer works
[2026-02-07 19:08:29] Set ATHENA_PROC_NUMBER=4
[2026-02-07 19:08:29] Set ATHENA_CORE_NUMBER=4
[2026-02-07 19:08:29] Starting ATLAS job with PandaID=7005738222
[2026-02-07 19:08:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 20:44:53]  *** The last 200 lines of the pilot log: ***
[2026-02-07 20:44:53]  mtime=0
[2026-02-07 20:44:53]  protocol_id=None
[2026-02-07 20:44:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 20:44:53]  replicas=None
[2026-02-07 20:44:53]  scope=mc23_13p6TeV
[2026-02-07 20:44:53]  status=None
[2026-02-07 20:44:53]  status_code=0
[2026-02-07 20:44:53]  storage_token=
[2026-02-07 20:44:53]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7005738222/log.48317892._015391.job.log.tgz.1
[2026-02-07 20:44:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/0a/log.48317892._015391.job.log.tgz.1
[2026-02-07 20:44:53]  workdir=None
[2026-02-07 20:44:53] ]
[2026-02-07 20:44:53] 2026-02-07 19:43:49,239 | INFO     | transferring file log.48317892._015391.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7005738222/log.48317892._015391.job.log.tgz.1 to /var/li
[2026-02-07 20:44:53] 2026-02-07 19:43:49,239 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7005738222/log.48317892._015391.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-07 20:44:53] 2026-02-07 19:43:49,254 | INFO     | adding to output.list: log.48317892._015391.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/0a/log.48317892._015391.job.log.tg
[2026-02-07 20:44:53] 2026-02-07 19:43:49,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 20:44:53] 2026-02-07 19:43:49,255 | INFO     | summary of transferred files:
[2026-02-07 20:44:53] 2026-02-07 19:43:49,255 | INFO     |  -- lfn=log.48317892._015391.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 20:44:53] 2026-02-07 19:43:49,255 | INFO     | stage-out finished correctly
[2026-02-07 20:44:53] 2026-02-07 19:43:49,373 | INFO     | time since job start (5711s) is within the limit (349056.0s)
[2026-02-07 20:44:53] 2026-02-07 19:43:49,445 | INFO     | monitor loop #436: job 0:7005738222 is in state 'finished'
[2026-02-07 20:44:53] 2026-02-07 19:43:49,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 20:44:53] 2026-02-07 19:43:50,977 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 20:44:53] 2026-02-07 19:43:51,378 | INFO     | time since job start (5713s) is within the limit (349056.0s)
[2026-02-07 20:44:53] 2026-02-07 19:43:51,949 | INFO     | monitor loop #437: job 0:7005738222 is in state 'finished'
[2026-02-07 20:44:53] 2026-02-07 19:43:51,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,233 | INFO     | job 7005738222 has state=finished
[2026-02-07 20:44:53] 2026-02-07 19:43:52,233 | INFO     | preparing for final server update for job 7005738222 in state='finished'
[2026-02-07 20:44:53] 2026-02-07 19:43:52,233 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7005738222/jobReport.json
[2026-02-07 20:44:53] 2026-02-07 19:43:52,237 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/1/workernode_map.json
[2026-02-07 20:44:53] 2026-02-07 19:43:52,238 | INFO     | this job has now completed (state=finished)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,238 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,238 | INFO     | log transfer has been attempted: DONE
[2026-02-07 20:44:53] 2026-02-07 19:43:52,238 | INFO     | job 7005738222 has finished - writing final server update
[2026-02-07 20:44:53] 2026-02-07 19:43:52,239 | INFO     | total number of processed events: 400 (read)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,240 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7005738222/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,241 | INFO     | extracted standard info from prmon json
[2026-02-07 20:44:53] 2026-02-07 19:43:52,241 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 20:44:53] 2026-02-07 19:43:52,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 20:44:53] 2026-02-07 19:43:52,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 20:44:53] 2026-02-07 19:43:52,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 20:44:53] 2026-02-07 19:43:52,242 | INFO     | fitting pss+swap vs Time
[2026-02-07 20:44:53] 2026-02-07 19:43:52,242 | INFO     | sum of square deviations: 204163828.0
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | sum of deviations: -327164655.00000006
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | mean x: 1770490664.0
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | mean y: 2332095.2988505745
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | intersect: 2839475055.1589146
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | chi2: 0.008793025265724118
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | current memory leak: -1.60 B/s (using 87 data points, chi2=0.01)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | could have reported an average CPU frequency of 2400 MHz (7 samples)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | ..............................
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | . Timing measurements:
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | . get job = 0 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | . initial setup = 3 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,243 | INFO     | . payload setup = 3 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,244 | INFO     | . stage-in = 0 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,244 | INFO     | . payload execution = 5691 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,244 | INFO     | . stage-out = 0 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,244 | INFO     | . log creation = 0 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,244 | INFO     | ..............................
[2026-02-07 20:44:53] 2026-02-07 19:43:52,290 | INFO     | 
[2026-02-07 20:44:53] 2026-02-07 19:43:52,290 | INFO     | job summary report
[2026-02-07 20:44:53] 2026-02-07 19:43:52,290 | INFO     | --------------------------------------------------
[2026-02-07 20:44:53] 2026-02-07 19:43:52,290 | INFO     | PanDA job id: 7005738222
[2026-02-07 20:44:53] 2026-02-07 19:43:52,290 | INFO     | task id: 48317892
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | errors: (none)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | pilot state: finished 
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | transexitcode: 0
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | exeerrorcode: 0
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | exeerrordiag: 
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | exitcode: 0
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | exitmsg: OK
[2026-02-07 20:44:53] 2026-02-07 19:43:52,291 | INFO     | cpuconsumptiontime: 21803 s
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | nevents: 400
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | neventsw: 0
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | pid: 1563976
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | pgrp: 1563976
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | corecount: 4
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | event service: False
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | sizes: {0: 2283053, 11: 2283053, 5697: 2309794, 5699: 2318820, 5701: 2318876, 5702: 2319070}
[2026-02-07 20:44:53] 2026-02-07 19:43:52,292 | INFO     | --------------------------------------------------
[2026-02-07 20:44:53] 2026-02-07 19:43:52,293 | INFO     | 
[2026-02-07 20:44:53] 2026-02-07 19:43:52,293 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2026-02-07 20:44:53] 2026-02-07 19:43:52,313 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,316 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,316 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 20:44:53] 2026-02-07 19:43:52,316 | INFO     | job 7005738222 has completed (purged errors)
[2026-02-07 20:44:53] 2026-02-07 19:43:52,317 | INFO     | overall cleanup function is called
[2026-02-07 20:44:53] 2026-02-07 19:43:52,493 | INFO     | PID=1559488 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 20:44:53] 2026-02-07 19:43:52,493 | INFO     | .. there are 3 such processes running
[2026-02-07 20:44:53] 2026-02-07 19:43:53,325 | INFO     | --- collectZombieJob: --- 10, [1563976]
[2026-02-07 20:44:53] 2026-02-07 19:43:53,325 | INFO     | zombie collector waiting for pid 1563976
[2026-02-07 20:44:53] 2026-02-07 19:43:53,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 20:44:53] 2026-02-07 19:43:53,325 | INFO     | collected zombie processes
[2026-02-07 20:44:53] 2026-02-07 19:43:53,326 | INFO     | will attempt to kill all subprocesses of pid=1563976
[2026-02-07 20:44:53] 2026-02-07 19:43:53,417 | INFO     | process IDs to be killed: [1563976] (in reverse order)
[2026-02-07 20:44:53] 2026-02-07 19:43:53,459 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 20:44:53] 2026-02-07 19:43:53,459 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 20:44:53] 2026-02-07 19:43:53,465 | INFO     | did not find any defunct processes belonging to 1563976
[2026-02-07 20:44:53] 2026-02-07 19:43:53,470 | INFO     | did not find any defunct processes belonging to 1563976
[2026-02-07 20:44:53] 2026-02-07 19:43:53,470 | INFO     | ready for new job
[2026-02-07 20:44:53] 2026-02-07 19:43:53,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 20:44:53] 2026-02-07 19:43:53,471 | INFO     | **************************************
[2026-02-07 20:44:53] 2026-02-07 19:43:53,471 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 20:44:53] 2026-02-07 19:43:53,471 | INFO     | **************************************
[2026-02-07 20:44:53] 2026-02-07 19:43:53,471 | INFO     | 
[2026-02-07 20:44:53] 2026-02-07 19:43:53,472 | INFO     | pilot is running in a VM
[2026-02-07 20:44:53] 2026-02-07 19:43:53,472 | INFO     | architecture information:
[2026-02-07 20:44:53] 2026-02-07 19:43:53,472 | INFO     | executing command: cat /etc/os-release
[2026-02-07 20:44:53] 2026-02-07 19:43:53,484 | INFO     | cat /etc/os-release:
[2026-02-07 20:44:53] NAME="CentOS Linux"
[2026-02-07 20:44:53] VERSION="7 (Core)"
[2026-02-07 20:44:53] ID="centos"
[2026-02-07 20:44:53] ID_LIKE="rhel fedora"
[2026-02-07 20:44:53] VERSION_ID="7"
[2026-02-07 20:44:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 20:44:53] ANSI_COLOR="0;31"
[2026-02-07 20:44:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 20:44:53] HOME_URL="https://www.centos.org/"
[2026-02-07 20:44:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 20:44:53] 
[2026-02-07 20:44:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 20:44:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 20:44:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 20:44:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 20:44:53] 
[2026-02-07 20:44:53] 2026-02-07 19:43:53,484 | INFO     | **************************************
[2026-02-07 20:44:53] 2026-02-07 19:43:53,987 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2026-02-07 20:44:53] 2026-02-07 19:43:54,002 | INFO     | sufficient remaining disk space (160742506496 B)
[2026-02-07 20:44:53] 2026-02-07 19:43:54,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 20:44:53] 2026-02-07 19:43:54,003 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 20:44:53] 2026-02-07 19:43:54,003 | INFO     | update_server=False
[2026-02-07 20:44:53] 2026-02-07 19:43:54,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 20:44:53] 2026-02-07 19:43:54,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 20:44:53] 2026-02-07 19:43:54,271 | INFO     | all data control threads have been joined
[2026-02-07 20:44:53] 2026-02-07 19:43:54,435 | INFO     | all job control threads have been joined
[2026-02-07 20:44:53] 2026-02-07 19:43:54,452 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 20:44:53] 2026-02-07 19:43:54,453 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 20:44:53] 2026-02-07 19:43:54,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 20:44:53] 2026-02-07 19:43:54,453 | INFO     | will abort loop
[2026-02-07 20:44:53] 2026-02-07 19:43:54,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 20:44:53] 2026-02-07 19:43:55,009 | INFO     | [job] retrieve thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,009 | INFO     | [job] queue monitor thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,245 | INFO     | all payload control threads have been joined
[2026-02-07 20:44:53] 2026-02-07 19:43:55,276 | INFO     | [data] control thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,438 | INFO     | [job] control thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,458 | INFO     | [job] job monitor thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,623 | INFO     | [job] validate thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,624 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,624 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,838 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,862 | INFO     | [data] copytool_in thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:55,893 | INFO     | [payload] failed_post thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:56,090 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:56,250 | INFO     | [payload] control thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:56,391 | INFO     | [payload] validate_post thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:56,814 | INFO     | [data] copytool_out thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:43:57,053 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 20:44:53] 2026-02-07 19:44:01,059 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 20:44:53] 2026-02-07 19:44:24,660 | INFO     | PID=1559488 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 20:44:53] 2026-02-07 19:44:24,660 | INFO     | .. there are 3 such processes running
[2026-02-07 20:44:53] 2026-02-07 19:44:24,661 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 20:44:53] 2026-02-07 19:44:24,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 20:44:53] 2026-02-07 19:44:24,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 20:44:53] 2026-02-07 19:44:46,882 | INFO     | [monitor] cgroup control has ended
[2026-02-07 20:44:53] 2026-02-07 19:44:48,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125825962047296)>', '<ExcThread(monitor, started 125825454155520)>']
[2026-02-07 20:44:53] 2026-02-07 19:44:48,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 20:44:53] 2026-02-07 19:44:48,722 | INFO     | [monitor] control thread has ended
[2026-02-07 20:44:53] 2026-02-07 19:44:53,304 | INFO     | all workflow threads have been joined
[2026-02-07 20:44:53] 2026-02-07 19:44:53,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 20:44:53] 2026-02-07 19:44:53,304 | INFO     | traces error code: 0
[2026-02-07 20:44:53] 2026-02-07 19:44:53,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 20:44:53] 2026-02-07 19:44:53,377 [wrapper] ==== pilot stdout END ====
[2026-02-07 20:44:53] 2026-02-07 19:44:53,380 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 20:44:53] 2026-02-07 19:44:53,382 [wrapper] pilotpid: 1559488
[2026-02-07 20:44:53] 2026-02-07 19:44:53,384 [wrapper] Pilot exit status: 0
[2026-02-07 20:44:53] 2026-02-07 19:44:53,395 [wrapper] pandaids: 7005738222
[2026-02-07 20:44:53] 2026-02-07 19:44:53,418 [wrapper] cleanup supervisor_pilot 1598850 1559489
[2026-02-07 20:44:53] 2026-02-07 19:44:53,420 [wrapper] Test setup, not cleaning
[2026-02-07 20:44:53] 2026-02-07 19:44:53,425 [wrapper] apfmon messages muted
[2026-02-07 20:44:53] 2026-02-07 19:44:53,427 [wrapper] ==== wrapper stdout END ====
[2026-02-07 20:44:53] 2026-02-07 19:44:53,430 [wrapper] ==== wrapper stderr END ====
[2026-02-07 20:44:53]  *** Error codes and diagnostics ***
[2026-02-07 20:44:53]     "exeErrorCode": 0,
[2026-02-07 20:44:53]     "exeErrorDiag": "",
[2026-02-07 20:44:53]     "pilotErrorCode": 0,
[2026-02-07 20:44:53]     "pilotErrorDiag": "",
[2026-02-07 20:44:53]  *** Listing of results directory ***
[2026-02-07 20:44:53] insgesamt 679028
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc      5111 Feb  7 06:41 queuedata.json
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc    584627 Feb  7 06:41 pilot3.tar.gz
[2026-02-07 20:44:53] -rwx------ 1 yeti boinc     36322 Feb  7 06:41 runpilot2-wrapper.sh
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc       100 Feb  7 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 20:44:53] -rwxr-xr-x 1 yeti boinc      7986 Feb  7 19:08 run_atlas
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc       105 Feb  7 19:08 job.xml
[2026-02-07 20:44:53] -rw-r--r-- 2 yeti boinc     15845 Feb  7 19:08 start_atlas.sh
[2026-02-07 20:44:53] drwxrwx--x 2 yeti boinc      4096 Feb  7 19:08 shared
[2026-02-07 20:44:53] -rw-r--r-- 2 yeti boinc    597951 Feb  7 19:08 input.tar.gz
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc      6620 Feb  7 19:08 init_data.xml
[2026-02-07 20:44:53] -rw-r--r-- 2 yeti boinc 504848920 Feb  7 19:08 EVNT.48317889._000275.pool.root.1
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc         0 Feb  7 19:08 boinc_setup_complete
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc         0 Feb  7 19:08 boinc_lockfile
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc      2522 Feb  7 19:08 pandaJob.out
[2026-02-07 20:44:53] -rw------- 1 yeti boinc        52 Feb  7 19:08 setup.sh.local
[2026-02-07 20:44:53] -rw------- 1 yeti boinc   1009494 Feb  7 19:08 agis_schedconf.cvmfs.json
[2026-02-07 20:44:53] -rw------- 1 yeti boinc   1513088 Feb  7 19:08 agis_ddmendpoints.agis.ALL.json
[2026-02-07 20:44:53] -rw------- 1 yeti boinc       419 Feb  7 19:08 workernode_map.json
[2026-02-07 20:44:53] drwx------ 5 yeti boinc      4096 Feb  7 19:08 pilot3
[2026-02-07 20:44:53] -rw------- 1 yeti boinc 184264529 Feb  7 20:43 HITS.48317892._015391.pool.root.1
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc       530 Feb  7 20:43 boinc_task_state.xml
[2026-02-07 20:44:53] -rw------- 1 yeti boinc      1022 Feb  7 20:43 memory_monitor_summary.json
[2026-02-07 20:44:53] -rw------- 1 yeti boinc    282046 Feb  7 20:43 log.48317892._015391.job.log.tgz.1
[2026-02-07 20:44:53] -rw------- 1 yeti boinc      6307 Feb  7 20:43 heartbeat.json
[2026-02-07 20:44:53] -rw------- 1 yeti boinc        95 Feb  7 20:44 pilot_heartbeat.json
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc      8192 Feb  7 20:44 boinc_mmap_file
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc        27 Feb  7 20:44 wrapper_checkpoint.txt
[2026-02-07 20:44:53] -rw------- 1 yeti boinc      5082 Feb  7 20:44 pilotlog.txt
[2026-02-07 20:44:53] -rw------- 1 yeti boinc    852258 Feb  7 20:44 log.48317892._015391.job.log.1
[2026-02-07 20:44:53] -rw------- 1 yeti boinc       357 Feb  7 20:44 output.list
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc       620 Feb  7 20:44 runtime_log
[2026-02-07 20:44:53] -rw------- 1 yeti boinc   1146880 Feb  7 20:44 result.tar.gz
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc      9544 Feb  7 20:44 runtime_log.err
[2026-02-07 20:44:53] -rw------- 1 yeti boinc       639 Feb  7 20:44 7PrMDmkFq88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2eaKDmDdJcAo.diag
[2026-02-07 20:44:53] -rw-r--r-- 1 yeti boinc     21526 Feb  7 20:44 stderr.txt
[2026-02-07 20:44:53] HITS file was successfully produced:
[2026-02-07 20:44:53] -rw------- 1 yeti boinc 184264529 Feb  7 20:43 shared/HITS.pool.root.1
[2026-02-07 20:44:53]  *** Contents of shared directory: ***
[2026-02-07 20:44:53] insgesamt 674696
[2026-02-07 20:44:53] -rw-r--r-- 2 yeti boinc     15845 Feb  7 19:08 start_atlas.sh
[2026-02-07 20:44:53] -rw-r--r-- 2 yeti boinc    597951 Feb  7 19:08 input.tar.gz
[2026-02-07 20:44:53] -rw-r--r-- 2 yeti boinc 504848920 Feb  7 19:08 ATLAS.root_0
[2026-02-07 20:44:53] -rw------- 1 yeti boinc 184264529 Feb  7 20:43 HITS.pool.root.1
[2026-02-07 20:44:53] -rw------- 1 yeti boinc   1146880 Feb  7 20:44 result.tar.gz
20:44:55 (1555423): run_atlas exited; CPU time 21875.921649
20:44:55 (1555423): called boinc_finish(0)

</stderr_txt>
]]>

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