Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
08:42:44 (1044225): wrapper (7.7.26015): starting
08:42:44 (1044225): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 08:42:44] Arguments: --nthreads 12
[2026-02-08 08:42:44] Threads: 12
[2026-02-08 08:42:44] Checking for CVMFS
[2026-02-08 08:42:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 08:42:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 08:42:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 08:42:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 08:42:48] 2.12.7.0 5195 1816 65400 156021 2 50 3158817 4194304 917 130560 0 1926833 99.993 59485 2069 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-02-08 08:42:48] CVMFS is ok
[2026-02-08 08:42:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 08:42:48] Checking for apptainer binary...
[2026-02-08 08:42:48] apptainer is not installed, using version from CVMFS
[2026-02-08 08:42:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 08:42:48] Trebeth
[2026-02-08 08:42:48] apptainer works
[2026-02-08 08:42:48] Set ATHENA_PROC_NUMBER=12
[2026-02-08 08:42:48] Set ATHENA_CORE_NUMBER=12
[2026-02-08 08:42:48] Starting ATLAS job with PandaID=7000144179
[2026-02-08 08:42:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 09:44:13]  *** The last 200 lines of the pilot log: ***
[2026-02-08 09:44:13]  guid=b59db02a-3592-4cff-8aef-7c1b4b9c7bce
[2026-02-08 09:44:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-08 09:44:13]  is_altstaged=None
[2026-02-08 09:44:13]  is_tar=False
[2026-02-08 09:44:13]  lfn=log.48466714._001003.job.log.tgz.1
[2026-02-08 09:44:13]  mtime=0
[2026-02-08 09:44:13]  protocol_id=None
[2026-02-08 09:44:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 09:44:13]  replicas=None
[2026-02-08 09:44:13]  scope=mc23_13p6TeV
[2026-02-08 09:44:13]  status=None
[2026-02-08 09:44:13]  status_code=0
[2026-02-08 09:44:13]  storage_token=
[2026-02-08 09:44:13]  surl=/var/lib/boinc-client/slots/9/PanDA_Pilot-7000144179/log.48466714._001003.job.log.tgz.1
[2026-02-08 09:44:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/ee/log.48466714._001003.job.log.tgz.1
[2026-02-08 09:44:13]  workdir=None
[2026-02-08 09:44:13] ]
[2026-02-08 09:44:13] 2026-02-08 14:43:15,266 | INFO     | transferring file log.48466714._001003.job.log.tgz.1 from /var/lib/boinc-client/slots/9/PanDA_Pilot-7000144179/log.48466714._001003.job.log.tgz.1 to /var/lib/boinc
[2026-02-08 09:44:13] 2026-02-08 14:43:15,266 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/9/PanDA_Pilot-7000144179/log.48466714._001003.job.log.tgz.1 /var/lib/boinc-client/slots/9/log.484667
[2026-02-08 09:44:13] 2026-02-08 14:43:15,277 | INFO     | adding to output.list: log.48466714._001003.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/ee/log.48466714._001003.job.log.tg
[2026-02-08 09:44:13] 2026-02-08 14:43:15,277 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 09:44:13] 2026-02-08 14:43:15,278 | INFO     | summary of transferred files:
[2026-02-08 09:44:13] 2026-02-08 14:43:15,278 | INFO     |  -- lfn=log.48466714._001003.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 09:44:13] 2026-02-08 14:43:15,278 | INFO     | stage-out finished correctly
[2026-02-08 09:44:13] 2026-02-08 14:43:15,341 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 09:44:13] 2026-02-08 14:43:15,680 | INFO     | monitor loop #274: job 0:7000144179 is in state 'finished'
[2026-02-08 09:44:13] 2026-02-08 14:43:15,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 09:44:13] 2026-02-08 14:43:15,762 | INFO     | time since job start (3613s) is within the limit (349056.0s)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,209 | INFO     | job 7000144179 has state=finished
[2026-02-08 09:44:13] 2026-02-08 14:43:16,210 | INFO     | preparing for final server update for job 7000144179 in state='finished'
[2026-02-08 09:44:13] 2026-02-08 14:43:16,210 | INFO     | reading metadata from: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000144179/jobReport.json
[2026-02-08 09:44:13] 2026-02-08 14:43:16,212 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/9/workernode_map.json
[2026-02-08 09:44:13] 2026-02-08 14:43:16,213 | INFO     | this job has now completed (state=finished)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,213 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,213 | INFO     | log transfer has been attempted: DONE
[2026-02-08 09:44:13] 2026-02-08 14:43:16,213 | INFO     | job 7000144179 has finished - writing final server update
[2026-02-08 09:44:13] 2026-02-08 14:43:16,213 | INFO     | total number of processed events: 400 (read)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,246 | INFO     | using path: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000144179/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,246 | INFO     | extracted standard info from prmon json
[2026-02-08 09:44:13] 2026-02-08 14:43:16,246 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 09:44:13] 2026-02-08 14:43:16,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 09:44:13] 2026-02-08 14:43:16,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 09:44:13] 2026-02-08 14:43:16,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 09:44:13] 2026-02-08 14:43:16,249 | INFO     | fitting pss+swap vs Time
[2026-02-08 09:44:13] 2026-02-08 14:43:16,249 | INFO     | sum of square deviations: 43584073.0
[2026-02-08 09:44:13] 2026-02-08 14:43:16,249 | INFO     | sum of deviations: -4018745453.0
[2026-02-08 09:44:13] 2026-02-08 14:43:16,249 | INFO     | mean x: 1770560061.5
[2026-02-08 09:44:13] 2026-02-08 14:43:16,249 | INFO     | mean y: 2965380.6153846155
[2026-02-08 09:44:13] 2026-02-08 14:43:16,249 | INFO     | intersect: 163260543359.07843
[2026-02-08 09:44:13] 2026-02-08 14:43:16,250 | INFO     | chi2: 0.12557729537826887
[2026-02-08 09:44:13] 2026-02-08 14:43:16,250 | INFO     | current memory leak: -92.21 B/s (using 52 data points, chi2=0.13)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,250 | INFO     | could have reported an average CPU frequency of 3088 MHz (6 samples)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,250 | INFO     | ..............................
[2026-02-08 09:44:13] 2026-02-08 14:43:16,250 | INFO     | . Timing measurements:
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . get job = 0 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . initial setup = 6 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . payload setup = 4 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . stage-in = 0 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . payload execution = 3593 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . stage-out = 0 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | . log creation = 0 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,251 | INFO     | ..............................
[2026-02-08 09:44:13] 2026-02-08 14:43:16,337 | INFO     | 
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | job summary report
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | --------------------------------------------------
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | PanDA job id: 7000144179
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | task id: 48466714
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | errors: (none)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | pilot state: finished 
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | transexitcode: 0
[2026-02-08 09:44:13] 2026-02-08 14:43:16,338 | INFO     | exeerrorcode: 0
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | exeerrordiag: 
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | exitcode: 0
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | exitmsg: OK
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | cpuconsumptiontime: 37760 s
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | nevents: 400
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | neventsw: 0
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | pid: 1053479
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | pgrp: 1053479
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | corecount: 12
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | event service: False
[2026-02-08 09:44:13] 2026-02-08 14:43:16,339 | INFO     | sizes: {0: 2282746, 1: 2283036, 11: 2283036, 3601: 2308823, 3602: 2317891, 3603: 2318029}
[2026-02-08 09:44:13] 2026-02-08 14:43:16,340 | INFO     | --------------------------------------------------
[2026-02-08 09:44:13] 2026-02-08 14:43:16,340 | INFO     | 
[2026-02-08 09:44:13] 2026-02-08 14:43:16,340 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/9
[2026-02-08 09:44:13] 2026-02-08 14:43:16,358 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,358 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,358 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,358 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,359 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | job 7000144179 has completed (purged errors)
[2026-02-08 09:44:13] 2026-02-08 14:43:16,360 | INFO     | overall cleanup function is called
[2026-02-08 09:44:13] 2026-02-08 14:43:17,368 | INFO     | --- collectZombieJob: --- 10, [1053479]
[2026-02-08 09:44:13] 2026-02-08 14:43:17,368 | INFO     | zombie collector waiting for pid 1053479
[2026-02-08 09:44:13] 2026-02-08 14:43:17,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 09:44:13] 2026-02-08 14:43:17,368 | INFO     | collected zombie processes
[2026-02-08 09:44:13] 2026-02-08 14:43:17,369 | INFO     | will attempt to kill all subprocesses of pid=1053479
[2026-02-08 09:44:13] 2026-02-08 14:43:17,546 | INFO     | process IDs to be killed: [1053479] (in reverse order)
[2026-02-08 09:44:13] 2026-02-08 14:43:17,599 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 09:44:13] 2026-02-08 14:43:17,599 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 09:44:13] 2026-02-08 14:43:17,604 | INFO     | did not find any defunct processes belonging to 1053479
[2026-02-08 09:44:13] 2026-02-08 14:43:17,609 | INFO     | did not find any defunct processes belonging to 1053479
[2026-02-08 09:44:13] 2026-02-08 14:43:17,609 | INFO     | ready for new job
[2026-02-08 09:44:13] 2026-02-08 14:43:17,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 09:44:13] 2026-02-08 14:43:17,610 | INFO     | **************************************
[2026-02-08 09:44:13] 2026-02-08 14:43:17,610 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 09:44:13] 2026-02-08 14:43:17,611 | INFO     | **************************************
[2026-02-08 09:44:13] 2026-02-08 14:43:17,611 | INFO     | 
[2026-02-08 09:44:13] 2026-02-08 14:43:17,631 | INFO     | architecture information:
[2026-02-08 09:44:13] 2026-02-08 14:43:17,631 | INFO     | executing command: cat /etc/os-release
[2026-02-08 09:44:13] 2026-02-08 14:43:17,640 | INFO     | cat /etc/os-release:
[2026-02-08 09:44:13] NAME="CentOS Linux"
[2026-02-08 09:44:13] VERSION="7 (Core)"
[2026-02-08 09:44:13] ID="centos"
[2026-02-08 09:44:13] ID_LIKE="rhel fedora"
[2026-02-08 09:44:13] VERSION_ID="7"
[2026-02-08 09:44:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 09:44:13] ANSI_COLOR="0;31"
[2026-02-08 09:44:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 09:44:13] HOME_URL="https://www.centos.org/"
[2026-02-08 09:44:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 09:44:13] 
[2026-02-08 09:44:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 09:44:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 09:44:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 09:44:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 09:44:13] 
[2026-02-08 09:44:13] 2026-02-08 14:43:17,640 | INFO     | **************************************
[2026-02-08 09:44:13] 2026-02-08 14:43:18,143 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2026-02-08 09:44:13] 2026-02-08 14:43:18,159 | INFO     | sufficient remaining disk space (373849849856 B)
[2026-02-08 09:44:13] 2026-02-08 14:43:18,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 09:44:13] 2026-02-08 14:43:18,159 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 09:44:13] 2026-02-08 14:43:18,159 | INFO     | update_server=False
[2026-02-08 09:44:13] 2026-02-08 14:43:18,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 09:44:13] 2026-02-08 14:43:18,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:44:13] 2026-02-08 14:43:18,183 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-08 09:44:13] 2026-02-08 14:43:18,184 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-08 09:44:13] 2026-02-08 14:43:18,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:44:13] 2026-02-08 14:43:18,184 | INFO     | will abort loop
[2026-02-08 09:44:13] 2026-02-08 14:43:18,208 | INFO     | all payload control threads have been joined
[2026-02-08 09:44:13] 2026-02-08 14:43:18,300 | INFO     | all job control threads have been joined
[2026-02-08 09:44:13] 2026-02-08 14:43:18,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 09:44:13] 2026-02-08 14:43:18,418 | INFO     | all data control threads have been joined
[2026-02-08 09:44:13] 2026-02-08 14:43:19,164 | INFO     | [job] retrieve thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,165 | INFO     | [job] queue monitor thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,188 | INFO     | [job] job monitor thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,212 | INFO     | [payload] control thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,304 | INFO     | [job] control thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,424 | INFO     | [data] control thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,484 | INFO     | [data] copytool_in thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:19,892 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:20,256 | INFO     | [job] validate thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:20,272 | INFO     | [payload] validate_post thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:20,348 | INFO     | [data] copytool_out thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:20,516 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:20,616 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:20,640 | INFO     | [payload] failed_post thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:21,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 09:44:13] 2026-02-08 14:43:25,440 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:28,731 | INFO     | job.realtimelogging is not enabled
[2026-02-08 09:44:13] 2026-02-08 14:43:29,737 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 09:44:13] 2026-02-08 14:43:49,034 | INFO     | PID=1048654 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 09:44:13] 2026-02-08 14:43:49,034 | INFO     | .. there are 2 such processes running
[2026-02-08 09:44:13] 2026-02-08 14:43:49,034 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 09:44:13] 2026-02-08 14:43:49,034 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 09:44:13] 2026-02-08 14:43:49,034 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 09:44:13] 2026-02-08 14:44:07,492 | INFO     | [monitor] cgroup control has ended
[2026-02-08 09:44:13] 2026-02-08 14:44:08,468 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139889642317632)>', '<ExcThread(monitor, started 139889207133952)>']
[2026-02-08 09:44:13] 2026-02-08 14:44:09,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 09:44:13] 2026-02-08 14:44:09,112 | INFO     | [monitor] control thread has ended
[2026-02-08 09:44:13] 2026-02-08 14:44:13,494 | INFO     | all workflow threads have been joined
[2026-02-08 09:44:13] 2026-02-08 14:44:13,494 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 09:44:13] 2026-02-08 14:44:13,494 | INFO     | traces error code: 0
[2026-02-08 09:44:13] 2026-02-08 14:44:13,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 09:44:13] 2026-02-08 14:44:13,654 [wrapper] ==== pilot stdout END ====
[2026-02-08 09:44:13] 2026-02-08 14:44:13,656 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 09:44:13] 2026-02-08 14:44:13,658 [wrapper] pilotpid: 1048654
[2026-02-08 09:44:13] 2026-02-08 14:44:13,660 [wrapper] Pilot exit status: 0
[2026-02-08 09:44:13] 2026-02-08 14:44:13,667 [wrapper] pandaids: 7000144179
[2026-02-08 09:44:13] 2026-02-08 14:44:13,712 [wrapper] cleanup supervisor_pilot 1086803 1048655
[2026-02-08 09:44:13] 2026-02-08 14:44:13,714 [wrapper] Test setup, not cleaning
[2026-02-08 09:44:13] 2026-02-08 14:44:13,716 [wrapper] apfmon messages muted
[2026-02-08 09:44:13] 2026-02-08 14:44:13,718 [wrapper] ==== wrapper stdout END ====
[2026-02-08 09:44:13] 2026-02-08 14:44:13,719 [wrapper] ==== wrapper stderr END ====
[2026-02-08 09:44:13]  *** Error codes and diagnostics ***
[2026-02-08 09:44:13]     "exeErrorCode": 0,
[2026-02-08 09:44:13]     "exeErrorDiag": "",
[2026-02-08 09:44:13]     "pilotErrorCode": 0,
[2026-02-08 09:44:13]     "pilotErrorDiag": "",
[2026-02-08 09:44:13]  *** Listing of results directory ***
[2026-02-08 09:44:13] total 727412
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc    584627 Feb  7 00:41 pilot3.tar.gz
[2026-02-08 09:44:13] -rwx------ 1 boinc boinc     36322 Feb  7 00:42 runpilot2-wrapper.sh
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc      5111 Feb  7 00:43 queuedata.json
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc       100 Feb  8 08:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 09:44:13] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 08:42 run_atlas
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc       105 Feb  8 08:42 job.xml
[2026-02-08 09:44:13] -rw-r--r-- 2 boinc boinc     15845 Feb  8 08:42 start_atlas.sh
[2026-02-08 09:44:13] drwxrwx--x 2 boinc boinc      4096 Feb  8 08:42 shared
[2026-02-08 09:44:13] -rw-r--r-- 2 boinc boinc    597938 Feb  8 08:42 input.tar.gz
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc      7579 Feb  8 08:42 init_data.xml
[2026-02-08 09:44:13] -rw-r--r-- 2 boinc boinc 543020655 Feb  8 08:42 EVNT.48466711._000021.pool.root.1
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc         0 Feb  8 08:42 boinc_lockfile
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc      2496 Feb  8 08:42 pandaJob.out
[2026-02-08 09:44:13] -rw------- 1 boinc boinc        50 Feb  8 08:42 setup.sh.local
[2026-02-08 09:44:13] -rw------- 1 boinc boinc   1009526 Feb  8 08:42 agis_schedconf.cvmfs.json
[2026-02-08 09:44:13] -rw------- 1 boinc boinc   1513088 Feb  8 08:42 agis_ddmendpoints.agis.ALL.json
[2026-02-08 09:44:13] -rw------- 1 boinc boinc       429 Feb  8 08:43 workernode_map.json
[2026-02-08 09:44:13] drwx------ 5 boinc boinc      4096 Feb  8 08:43 pilot3
[2026-02-08 09:44:13] -rw------- 1 boinc boinc 196079008 Feb  8 09:42 HITS.48466714._001003.pool.root.1
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc       530 Feb  8 09:43 boinc_task_state.xml
[2026-02-08 09:44:13] -rw------- 1 boinc boinc      1032 Feb  8 09:43 memory_monitor_summary.json
[2026-02-08 09:44:13] -rw------- 1 boinc boinc    359637 Feb  8 09:43 log.48466714._001003.job.log.tgz.1
[2026-02-08 09:44:13] -rw------- 1 boinc boinc      6337 Feb  8 09:43 heartbeat.json
[2026-02-08 09:44:13] -rw------- 1 boinc boinc        95 Feb  8 09:43 pilot_heartbeat.json
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc      8192 Feb  8 09:44 boinc_mmap_file
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc        27 Feb  8 09:44 wrapper_checkpoint.txt
[2026-02-08 09:44:13] -rw------- 1 boinc boinc      5085 Feb  8 09:44 pilotlog.txt
[2026-02-08 09:44:13] -rw------- 1 boinc boinc    552163 Feb  8 09:44 log.48466714._001003.job.log.1
[2026-02-08 09:44:13] -rw------- 1 boinc boinc       357 Feb  8 09:44 output.list
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc       620 Feb  8 09:44 runtime_log
[2026-02-08 09:44:13] -rw------- 1 boinc boinc    931840 Feb  8 09:44 result.tar.gz
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc      9403 Feb  8 09:44 runtime_log.err
[2026-02-08 09:44:13] -rw------- 1 boinc boinc       650 Feb  8 09:44 alDNDmgGq88n9Rq4apOajLDm4fhM0noT9bVooX4SDmxRaKDmIg1Ltn.diag
[2026-02-08 09:44:13] -rw-r--r-- 1 boinc boinc     21082 Feb  8 09:44 stderr.txt
[2026-02-08 09:44:13] HITS file was successfully produced:
[2026-02-08 09:44:13] -rw------- 1 boinc boinc 196079008 Feb  8 09:42 shared/HITS.pool.root.1
[2026-02-08 09:44:13]  *** Contents of shared directory: ***
[2026-02-08 09:44:13] total 723300
[2026-02-08 09:44:13] -rw-r--r-- 2 boinc boinc     15845 Feb  8 08:42 start_atlas.sh
[2026-02-08 09:44:13] -rw-r--r-- 2 boinc boinc    597938 Feb  8 08:42 input.tar.gz
[2026-02-08 09:44:13] -rw-r--r-- 2 boinc boinc 543020655 Feb  8 08:42 ATLAS.root_0
[2026-02-08 09:44:13] -rw------- 1 boinc boinc 196079008 Feb  8 09:42 HITS.pool.root.1
[2026-02-08 09:44:13] -rw------- 1 boinc boinc    931840 Feb  8 09:44 result.tar.gz
09:44:15 (1044225): run_atlas exited; CPU time 37819.728342
09:44:15 (1044225): called boinc_finish(0)

</stderr_txt>
]]>

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