Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:06:51 (135847): wrapper (7.7.26015): starting
09:06:51 (135847): wrapper: running run_atlas (--nthreads 9)
[2026-02-07 09:06:51] Arguments: --nthreads 9
[2026-02-07 09:06:51] Threads: 9
[2026-02-07 09:06:51] Checking for CVMFS
[2026-02-07 09:06:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 09:06:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 09:06:51] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 09:06:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 09:06:52] 2.13.3.0 11285 135223 267056 155985 0 838 31409331 32935936 31466 16776704 0 735022122 99.538 940756122 37685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-07 09:06:52] CVMFS is ok
[2026-02-07 09:06:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 09:06:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 09:06:52] Further information can be found at the LHC@home message board.
[2026-02-07 09:06:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 09:06:52] Checking for apptainer binary...
[2026-02-07 09:06:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 09:06:52] Running /usr/bin/apptainer --version
[2026-02-07 09:06:52] apptainer version 1.4.5-2.el9
[2026-02-07 09:06:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 09:06:52] c7-3-29.aglt2.org
[2026-02-07 09:06:52] apptainer works
[2026-02-07 09:06:52] Set ATHENA_PROC_NUMBER=9
[2026-02-07 09:06:52] Set ATHENA_CORE_NUMBER=9
[2026-02-07 09:06:52] Starting ATLAS job with PandaID=7005769747
[2026-02-07 09:06:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 14:07:15]  *** The last 200 lines of the pilot log: ***
[2026-02-07 14:07:15] 2026-02-07 19:06:37,335 | INFO     | monitor loop #1028: job 0:7005769747 is in state 'finished'
[2026-02-07 14:07:15] 2026-02-07 19:06:37,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,338 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7005769747/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,338 | INFO     | extracted standard info from prmon json
[2026-02-07 14:07:15] 2026-02-07 19:06:37,338 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 14:07:15] 2026-02-07 19:06:37,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 14:07:15] 2026-02-07 19:06:37,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 14:07:15] 2026-02-07 19:06:37,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 14:07:15] 2026-02-07 19:06:37,375 | INFO     | fitting pss+swap vs Time
[2026-02-07 14:07:15] 2026-02-07 19:06:37,375 | INFO     | sum of square deviations: 7879343098.683641
[2026-02-07 14:07:15] 2026-02-07 19:06:37,377 | INFO     | sum of deviations: 47121113386.52042
[2026-02-07 14:07:15] 2026-02-07 19:06:37,378 | INFO     | mean x: 1770482231.7244897
[2026-02-07 14:07:15] 2026-02-07 19:06:37,378 | INFO     | mean y: 2582199.3027210883
[2026-02-07 14:07:15] 2026-02-07 19:06:37,378 | INFO     | intersect: -10585495124.534986
[2026-02-07 14:07:15] 2026-02-07 19:06:37,378 | INFO     | chi2: 2.35520207119579
[2026-02-07 14:07:15] 2026-02-07 19:06:37,379 | INFO     | sum of square deviations: 7484127910.927342
[2026-02-07 14:07:15] 2026-02-07 19:06:37,381 | INFO     | sum of deviations: 66016546958.560585
[2026-02-07 14:07:15] 2026-02-07 19:06:37,381 | INFO     | mean x: 1770482079.2283738
[2026-02-07 14:07:15] 2026-02-07 19:06:37,381 | INFO     | mean y: 2589383.809688581
[2026-02-07 14:07:15] 2026-02-07 19:06:37,381 | INFO     | intersect: -15614609401.90527
[2026-02-07 14:07:15] 2026-02-07 19:06:37,382 | INFO     | chi2: 1.6097564780212543
[2026-02-07 14:07:15] 2026-02-07 19:06:37,382 | INFO     | current chi2=1.6097564780212543 (change=31.651024864972875 %)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,382 | INFO     | sum of square deviations: 7102354835.661987
[2026-02-07 14:07:15] 2026-02-07 19:06:37,384 | INFO     | sum of deviations: 64660911649.95779
[2026-02-07 14:07:15] 2026-02-07 19:06:37,384 | INFO     | mean x: 1770481926.7323945
[2026-02-07 14:07:15] 2026-02-07 19:06:37,385 | INFO     | mean y: 2588842.341549296
[2026-02-07 14:07:15] 2026-02-07 19:06:37,385 | INFO     | intersect: -16116146153.474806
[2026-02-07 14:07:15] 2026-02-07 19:06:37,385 | INFO     | chi2: 1.6100002619061573
[2026-02-07 14:07:15] 2026-02-07 19:06:37,385 | INFO     | current chi2=1.6100002619061573 (change=-0.015144146846524624 %)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,385 | INFO     | right removable region: 283
[2026-02-07 14:07:15] 2026-02-07 19:06:37,385 | INFO     | sum of square deviations: 7484087650.927342
[2026-02-07 14:07:15] 2026-02-07 19:06:37,410 | INFO     | sum of deviations: -900373861.5709229
[2026-02-07 14:07:15] 2026-02-07 19:06:37,411 | INFO     | mean x: 1770482384.2283738
[2026-02-07 14:07:15] 2026-02-07 19:06:37,411 | INFO     | mean y: 2600574.508650519
[2026-02-07 14:07:15] 2026-02-07 19:06:37,411 | INFO     | intersect: 215598622.56511244
[2026-02-07 14:07:15] 2026-02-07 19:06:37,411 | INFO     | chi2: 0.7698963199847648
[2026-02-07 14:07:15] 2026-02-07 19:06:37,411 | INFO     | current chi2=0.7698963199847648 (change=67.31081679144962 %)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,412 | INFO     | sum of square deviations: 7102274315.661987
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | sum of deviations: -4267070465.380289
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | mean x: 1770482536.7323945
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | mean y: 2601923.073943662
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | intersect: 1066313828.0481758
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | chi2: 0.7661045787578911
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | current chi2=0.7661045787578911 (change=0.4925002404153315 %)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,423 | INFO     | left removable region: 20
[2026-02-07 14:07:15] 2026-02-07 19:06:37,424 | INFO     | sum of square deviations: 5640286277.437291
[2026-02-07 14:07:15] 2026-02-07 19:06:37,425 | INFO     | sum of deviations: 9209812688.551334
[2026-02-07 14:07:15] 2026-02-07 19:06:37,426 | INFO     | mean x: 1770482506.2509506
[2026-02-07 14:07:15] 2026-02-07 19:06:37,426 | INFO     | mean y: 2611805.7946768063
[2026-02-07 14:07:15] 2026-02-07 19:06:37,426 | INFO     | intersect: -2888342916.868239
[2026-02-07 14:07:15] 2026-02-07 19:06:37,426 | INFO     | chi2: 0.0021134266010446466
[2026-02-07 14:07:15] 2026-02-07 19:06:37,426 | INFO     | current memory leak: 1.63 B/s (using 263 data points, chi2=0.00)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,428 | INFO     | could have reported an average CPU frequency of 3046 MHz (13 samples)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | ..............................
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . Timing measurements:
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . get job = 0 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . initial setup = 12 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . payload setup = 20 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . stage-in = 0 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . payload execution = 17906 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . stage-out = 3 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | . log creation = 0 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,429 | INFO     | ..............................
[2026-02-07 14:07:15] 2026-02-07 19:06:37,617 | INFO     | 
[2026-02-07 14:07:15] 2026-02-07 19:06:37,618 | INFO     | job summary report
[2026-02-07 14:07:15] 2026-02-07 19:06:37,618 | INFO     | --------------------------------------------------
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | PanDA job id: 7005769747
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | task id: 48431096
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | errors: (none)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | pilot state: finished 
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | transexitcode: 0
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | exeerrorcode: 0
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | exeerrordiag: 
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | exitcode: 0
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | exitmsg: OK
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | cpuconsumptiontime: 52108 s
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | nevents: 400
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | neventsw: 0
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | pid: 147448
[2026-02-07 14:07:15] 2026-02-07 19:06:37,619 | INFO     | pgrp: 147448
[2026-02-07 14:07:15] 2026-02-07 19:06:37,620 | INFO     | corecount: 9
[2026-02-07 14:07:15] 2026-02-07 19:06:37,620 | INFO     | event service: False
[2026-02-07 14:07:15] 2026-02-07 19:06:37,620 | INFO     | sizes: {0: 2282649, 1: 2283050, 2: 2283110, 12: 2283138, 17931: 2315247, 17935: 2324245, 17936: 2324429, 17938: 2324623}
[2026-02-07 14:07:15] 2026-02-07 19:06:37,620 | INFO     | --------------------------------------------------
[2026-02-07 14:07:15] 2026-02-07 19:06:37,620 | INFO     | 
[2026-02-07 14:07:15] 2026-02-07 19:06:37,620 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-02-07 14:07:15] 2026-02-07 19:06:37,639 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,639 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,640 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | job 7005769747 has completed (purged errors)
[2026-02-07 14:07:15] 2026-02-07 19:06:37,641 | INFO     | overall cleanup function is called
[2026-02-07 14:07:15] 2026-02-07 19:06:38,664 | INFO     | --- collectZombieJob: --- 10, [147448]
[2026-02-07 14:07:15] 2026-02-07 19:06:38,717 | INFO     | zombie collector waiting for pid 147448
[2026-02-07 14:07:15] 2026-02-07 19:06:38,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 14:07:15] 2026-02-07 19:06:38,717 | INFO     | collected zombie processes
[2026-02-07 14:07:15] 2026-02-07 19:06:38,717 | INFO     | will attempt to kill all subprocesses of pid=147448
[2026-02-07 14:07:15] 2026-02-07 19:06:39,654 | INFO     | PID=139653 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 14:07:15] 2026-02-07 19:06:39,659 | INFO     | .. there are 42 such processes running
[2026-02-07 14:07:15] 2026-02-07 19:06:40,020 | INFO     | process IDs to be killed: [147448] (in reverse order)
[2026-02-07 14:07:15] 2026-02-07 19:06:40,183 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 14:07:15] 2026-02-07 19:06:40,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 14:07:15] 2026-02-07 19:06:40,329 | INFO     | did not find any defunct processes belonging to 147448
[2026-02-07 14:07:15] 2026-02-07 19:06:40,475 | INFO     | did not find any defunct processes belonging to 147448
[2026-02-07 14:07:15] 2026-02-07 19:06:40,475 | INFO     | ready for new job
[2026-02-07 14:07:15] 2026-02-07 19:06:40,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 14:07:15] 2026-02-07 19:06:40,492 | INFO     | **************************************
[2026-02-07 14:07:15] 2026-02-07 19:06:40,492 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 14:07:15] 2026-02-07 19:06:40,492 | INFO     | **************************************
[2026-02-07 14:07:15] 2026-02-07 19:06:40,492 | INFO     | 
[2026-02-07 14:07:15] 2026-02-07 19:06:40,509 | INFO     | architecture information:
[2026-02-07 14:07:15] 2026-02-07 19:06:40,516 | INFO     | executing command: cat /etc/os-release
[2026-02-07 14:07:15] 2026-02-07 19:06:40,614 | INFO     | cat /etc/os-release:
[2026-02-07 14:07:15] NAME="CentOS Linux"
[2026-02-07 14:07:15] VERSION="7 (Core)"
[2026-02-07 14:07:15] ID="centos"
[2026-02-07 14:07:15] ID_LIKE="rhel fedora"
[2026-02-07 14:07:15] VERSION_ID="7"
[2026-02-07 14:07:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 14:07:15] ANSI_COLOR="0;31"
[2026-02-07 14:07:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 14:07:15] HOME_URL="https://www.centos.org/"
[2026-02-07 14:07:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 14:07:15] 
[2026-02-07 14:07:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 14:07:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 14:07:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 14:07:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 14:07:15] 
[2026-02-07 14:07:15] 2026-02-07 19:06:40,614 | INFO     | **************************************
[2026-02-07 14:07:15] 2026-02-07 19:06:41,120 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-02-07 14:07:15] 2026-02-07 19:06:41,231 | INFO     | sufficient remaining disk space (69581406208 B)
[2026-02-07 14:07:15] 2026-02-07 19:06:41,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 14:07:15] 2026-02-07 19:06:41,231 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 14:07:15] 2026-02-07 19:06:41,231 | INFO     | update_server=False
[2026-02-07 14:07:15] 2026-02-07 19:06:41,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 14:07:15] 2026-02-07 19:06:41,231 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 14:07:15] 2026-02-07 19:06:41,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 14:07:15] 2026-02-07 19:06:41,232 | INFO     | aborting loop
[2026-02-07 14:07:15] 2026-02-07 19:06:41,793 | INFO     | all data control threads have been joined
[2026-02-07 14:07:15] 2026-02-07 19:06:41,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 14:07:15] 2026-02-07 19:06:42,108 | INFO     | all payload control threads have been joined
[2026-02-07 14:07:15] 2026-02-07 19:06:42,219 | INFO     | all job control threads have been joined
[2026-02-07 14:07:15] 2026-02-07 19:06:42,237 | INFO     | [job] retrieve thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:42,238 | INFO     | [job] job monitor thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:42,247 | INFO     | [job] validate thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:42,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:42,460 | INFO     | [payload] failed_post thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:42,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 14:07:15] 2026-02-07 19:06:42,798 | INFO     | [data] control thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,060 | INFO     | [data] copytool_in thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,091 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,114 | INFO     | [payload] control thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,225 | INFO     | [job] control thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,238 | INFO     | [data] copytool_out thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,253 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,642 | INFO     | [job] queue monitor thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,724 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:43,748 | INFO     | [payload] validate_post thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:45,831 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 14:07:15] 2026-02-07 19:06:59,662 | INFO     | [monitor] cgroup control has ended
[2026-02-07 14:07:15] 2026-02-07 19:07:01,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269593704256)>', '<ExcThread(monitor, started 140269236238080)>']
[2026-02-07 14:07:15] 2026-02-07 19:07:06,469 | INFO     | all workflow threads have been joined
[2026-02-07 14:07:15] 2026-02-07 19:07:06,469 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 14:07:15] 2026-02-07 19:07:06,470 | INFO     | traces error code: 0
[2026-02-07 14:07:15] 2026-02-07 19:07:06,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 14:07:15] 2026-02-07 19:07:13,610 | INFO     | PID=139653 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-07 14:07:15] 2026-02-07 19:07:13,613 | INFO     | .. there are 42 such processes running
[2026-02-07 14:07:15] 2026-02-07 19:07:13,613 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 14:07:15] 2026-02-07 19:07:13,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 14:07:15] 2026-02-07 19:07:13,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 14:07:15] 2026-02-07 19:07:13,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 14:07:15] 2026-02-07 19:07:13,614 | INFO     | [monitor] control thread has ended
[2026-02-07 14:07:15] 2026-02-07 19:07:14,066 [wrapper] ==== pilot stdout END ====
[2026-02-07 14:07:15] 2026-02-07 19:07:14,103 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 14:07:15] 2026-02-07 19:07:14,105 [wrapper] pilotpid: 139653
[2026-02-07 14:07:15] 2026-02-07 19:07:14,108 [wrapper] Pilot exit status: 0
[2026-02-07 14:07:15] 2026-02-07 19:07:14,254 [wrapper] pandaids: 7005769747
[2026-02-07 14:07:15] 2026-02-07 19:07:14,606 [wrapper] cleanup supervisor_pilot 1766406 139654
[2026-02-07 14:07:15] 2026-02-07 19:07:14,642 [wrapper] Test setup, not cleaning
[2026-02-07 14:07:15] 2026-02-07 19:07:14,646 [wrapper] apfmon messages muted
[2026-02-07 14:07:15] 2026-02-07 19:07:14,658 [wrapper] ==== wrapper stdout END ====
[2026-02-07 14:07:15] 2026-02-07 19:07:14,662 [wrapper] ==== wrapper stderr END ====
[2026-02-07 14:07:15]  *** Error codes and diagnostics ***
[2026-02-07 14:07:15]     "exeErrorCode": 0,
[2026-02-07 14:07:15]     "exeErrorDiag": "",
[2026-02-07 14:07:15]     "pilotErrorCode": 0,
[2026-02-07 14:07:15]     "pilotErrorDiag": "",
[2026-02-07 14:07:15]  *** Listing of results directory ***
[2026-02-07 14:07:15] total 944204
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas    584627 Feb  7 00:41 pilot3.tar.gz
[2026-02-07 14:07:15] -rwx------. 1 boincer umatlas     36322 Feb  7 00:43 runpilot2-wrapper.sh
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas      5111 Feb  7 00:45 queuedata.json
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas       100 Feb  7 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 14:07:15] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  7 09:06 run_atlas
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas       105 Feb  7 09:06 job.xml
[2026-02-07 14:07:15] -rw-r--r--. 2 boincer umatlas 675701654 Feb  7 09:06 EVNT.48431094._000304.pool.root.1
[2026-02-07 14:07:15] -rw-r--r--. 2 boincer umatlas     15845 Feb  7 09:06 start_atlas.sh
[2026-02-07 14:07:15] drwxrwx--x. 2 boincer umatlas      4096 Feb  7 09:06 shared
[2026-02-07 14:07:15] -rw-r--r--. 2 boincer umatlas    597967 Feb  7 09:06 input.tar.gz
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas         0 Feb  7 09:06 boinc_lockfile
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas      2554 Feb  7 09:06 pandaJob.out
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas        57 Feb  7 09:06 setup.sh.local
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas   1009510 Feb  7 09:07 agis_schedconf.cvmfs.json
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas       428 Feb  7 09:07 workernode_map.json
[2026-02-07 14:07:15] drwx------. 5 boincer umatlas      4096 Feb  7 09:07 pilot3
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas      6947 Feb  7 14:02 init_data.xml
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas 281785307 Feb  7 14:05 HITS.48431096._007798.pool.root.1
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas       531 Feb  7 14:05 boinc_task_state.xml
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas      1045 Feb  7 14:06 memory_monitor_summary.json
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas   1513088 Feb  7 14:06 agis_ddmendpoints.agis.ALL.json
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas    538213 Feb  7 14:06 log.48431096._007798.job.log.tgz.1
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas      6346 Feb  7 14:06 heartbeat.json
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas      8192 Feb  7 14:07 boinc_mmap_file
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas        28 Feb  7 14:07 wrapper_checkpoint.txt
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas        95 Feb  7 14:07 pilot_heartbeat.json
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas       822 Feb  7 14:07 pilotlog.txt
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas   2176720 Feb  7 14:07 log.48431096._007798.job.log.1
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas       357 Feb  7 14:07 output.list
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas       620 Feb  7 14:07 runtime_log
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas   2734080 Feb  7 14:07 result.tar.gz
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas      9337 Feb  7 14:07 runtime_log.err
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas       660 Feb  7 14:07 nEcMDmiHq88n9Rq4apOajLDm4fhM0noT9bVooX4SDmfTaKDmOPbKPn.diag
[2026-02-07 14:07:15] -rw-r--r--. 1 boincer umatlas     21280 Feb  7 14:07 stderr.txt
[2026-02-07 14:07:15] HITS file was successfully produced:
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas 281785307 Feb  7 14:05 shared/HITS.pool.root.1
[2026-02-07 14:07:15]  *** Contents of shared directory: ***
[2026-02-07 14:07:15] total 938332
[2026-02-07 14:07:15] -rw-r--r--. 2 boincer umatlas 675701654 Feb  7 09:06 ATLAS.root_0
[2026-02-07 14:07:15] -rw-r--r--. 2 boincer umatlas     15845 Feb  7 09:06 start_atlas.sh
[2026-02-07 14:07:15] -rw-r--r--. 2 boincer umatlas    597967 Feb  7 09:06 input.tar.gz
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas 281785307 Feb  7 14:05 HITS.pool.root.1
[2026-02-07 14:07:15] -rw-------. 1 boincer umatlas   2734080 Feb  7 14:07 result.tar.gz
14:07:16 (135847): run_atlas exited; CPU time 52899.709540
14:07:16 (135847): called boinc_finish(0)

</stderr_txt>
]]>

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