Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:54:21 (3626619): wrapper (7.7.26015): starting
11:54:21 (3626619): wrapper: running run_atlas (--nthreads 4)
[2026-02-07 11:54:21] Arguments: --nthreads 4
[2026-02-07 11:54:21] Threads: 4
[2026-02-07 11:54:21] Checking for CVMFS
[2026-02-07 11:54:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 11:54:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 11:54:22] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 11:54:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 11:54:22] 2.11.3.0 3588909 306 52916 155991 1 50 4181174 4194305 0 130560 0 81155 99.948 13109 277 http://s1unl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.59.5:3128 1
[2026-02-07 11:54:22] CVMFS is ok
[2026-02-07 11:54:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 11:54:22] Checking for apptainer binary...
[2026-02-07 11:54:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 11:54:22] Running /usr/bin/apptainer --version
[2026-02-07 11:54:22] apptainer version 1.4.5-2.fc42
[2026-02-07 11:54:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 11:54:23] R7OwensSE
[2026-02-07 11:54:23] apptainer works
[2026-02-07 11:54:23] Set ATHENA_PROC_NUMBER=4
[2026-02-07 11:54:23] Set ATHENA_CORE_NUMBER=4
[2026-02-07 11:54:23] Starting ATLAS job with PandaID=6999412104
[2026-02-07 11:54:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 12:38:09]  *** The last 200 lines of the pilot log: ***
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | could have reported an average CPU frequency of 3434 MHz (5 samples)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | ..............................
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . Timing measurements:
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . get job = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . initial setup = 8 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . payload setup = 7 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . stage-in = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . payload execution = 2430 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . stage-out = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . log creation = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | ..............................
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | executing command: tail -n 20 /data/boinc/slots/7/PanDA_Pilot-6999412104/pilotlog.txt
[2026-02-07 12:38:09] 2026-02-07 18:37:38,028 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-07 12:38:09] - Log from pilotlog.txt -
[2026-02-07 12:38:09] 2026-02-07 18:37:38,005 | INFO     | sum of square deviations: 11133232.0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | sum of deviations: -3018971008.0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | mean x: 1770488188.0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | mean y: 2497110.1818181816
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | intersect: 480101403661.1684
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | chi2: 0.06872756558558699
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | current memory leak: -271.17 B/s (using 33 data points, chi2=0.07)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | could have reported an average CPU frequency of 3434 MHz (5 samples)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | ..............................
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . Timing measurements:
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . get job = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . initial setup = 8 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . payload setup = 7 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . stage-in = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . payload execution = 2430 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . stage-out = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . log creation = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | ..............................
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | executing command: tail -n 20 /data/boinc/slots/7/PanDA_Pilot-6999412104/pilotlog.txt
[2026-02-07 12:38:09] 2026-02-07 18:37:38,029 | WARNING  | 
[2026-02-07 12:38:09] [begin log extracts]
[2026-02-07 12:38:09] - Log from pilotlog.txt -
[2026-02-07 12:38:09] 2026-02-07 18:37:38,005 | INFO     | sum of square deviations: 11133232.0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | sum of deviations: -3018971008.0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | mean x: 1770488188.0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | mean y: 2497110.1818181816
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | intersect: 480101403661.1684
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | chi2: 0.06872756558558699
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | current memory leak: -271.17 B/s (using 33 data points, chi2=0.07)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,006 | INFO     | could have reported an average CPU frequency of 3434 MHz (5 samples)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | ..............................
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . Timing measurements:
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . get job = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . initial setup = 8 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . payload setup = 7 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . stage-in = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . payload execution = 2430 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . stage-out = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | . log creation = 0 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | ..............................
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-07 12:38:09] 2026-02-07 18:37:38,007 | INFO     | executing command: tail -n 20 /data/boinc/slots/7/PanDA_Pilot-6999412104/pilotlog.txt
[2026-02-07 12:38:09] [end log extracts]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,029 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,029 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2026-02-07 12:38:09] 2026-02-07 18:37:38,102 | INFO     | 
[2026-02-07 12:38:09] 2026-02-07 18:37:38,102 | INFO     | job summary report
[2026-02-07 12:38:09] 2026-02-07 18:37:38,102 | INFO     | --------------------------------------------------
[2026-02-07 12:38:09] 2026-02-07 18:37:38,102 | INFO     | PanDA job id: 6999412104
[2026-02-07 12:38:09] 2026-02-07 18:37:38,102 | INFO     | task id: 48318034
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-07 18:35:27,846 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "Co
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | pilot error code: 1328
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "C
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | pilot state: failed 
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | transexitcode: 65
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | exeerrorcode: 0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | exeerrordiag: 
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | exitcode: 65
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | cpuconsumptiontime: 8590 s
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | nevents: 0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | neventsw: 0
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | pid: 3634937
[2026-02-07 12:38:09] 2026-02-07 18:37:38,103 | INFO     | pgrp: 3634937
[2026-02-07 12:38:09] 2026-02-07 18:37:38,104 | INFO     | corecount: 4
[2026-02-07 12:38:09] 2026-02-07 18:37:38,104 | INFO     | event service: False
[2026-02-07 12:38:09] 2026-02-07 18:37:38,104 | INFO     | sizes: {0: 2281960, 1: 2283075, 12: 2283075, 2440: 2310888, 2442: 2315180, 2444: 2315236, 2562: 2315590}
[2026-02-07 12:38:09] 2026-02-07 18:37:38,104 | INFO     | --------------------------------------------------
[2026-02-07 12:38:09] 2026-02-07 18:37:38,104 | INFO     | 
[2026-02-07 12:38:09] 2026-02-07 18:37:38,104 | INFO     | executing command: ls -lF /data/boinc/slots/7
[2026-02-07 12:38:09] 2026-02-07 18:37:38,144 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,144 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | job 6999412104 has completed (purged errors)
[2026-02-07 12:38:09] 2026-02-07 18:37:38,146 | INFO     | overall cleanup function is called
[2026-02-07 12:38:09] 2026-02-07 18:37:39,152 | INFO     | --- collectZombieJob: --- 10, [3634937]
[2026-02-07 12:38:09] 2026-02-07 18:37:39,153 | INFO     | zombie collector waiting for pid 3634937
[2026-02-07 12:38:09] 2026-02-07 18:37:39,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 12:38:09] 2026-02-07 18:37:39,153 | INFO     | collected zombie processes
[2026-02-07 12:38:09] 2026-02-07 18:37:39,153 | INFO     | will attempt to kill all subprocesses of pid=3634937
[2026-02-07 12:38:09] 2026-02-07 18:37:39,250 | INFO     | process IDs to be killed: [3634937] (in reverse order)
[2026-02-07 12:38:09] 2026-02-07 18:37:39,320 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 12:38:09] 2026-02-07 18:37:39,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 12:38:09] 2026-02-07 18:37:39,324 | INFO     | did not find any defunct processes belonging to 3634937
[2026-02-07 12:38:09] 2026-02-07 18:37:39,327 | INFO     | did not find any defunct processes belonging to 3634937
[2026-02-07 12:38:09] 2026-02-07 18:37:39,327 | INFO     | ready for new job
[2026-02-07 12:38:09] 2026-02-07 18:37:39,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 12:38:09] 2026-02-07 18:37:39,328 | INFO     | **************************************
[2026-02-07 12:38:09] 2026-02-07 18:37:39,328 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 12:38:09] 2026-02-07 18:37:39,328 | INFO     | **************************************
[2026-02-07 12:38:09] 2026-02-07 18:37:39,328 | INFO     | 
[2026-02-07 12:38:09] 2026-02-07 18:37:39,329 | INFO     | architecture information:
[2026-02-07 12:38:09] 2026-02-07 18:37:39,330 | INFO     | executing command: cat /etc/os-release
[2026-02-07 12:38:09] 2026-02-07 18:37:39,346 | INFO     | cat /etc/os-release:
[2026-02-07 12:38:09] NAME="CentOS Linux"
[2026-02-07 12:38:09] VERSION="7 (Core)"
[2026-02-07 12:38:09] ID="centos"
[2026-02-07 12:38:09] ID_LIKE="rhel fedora"
[2026-02-07 12:38:09] VERSION_ID="7"
[2026-02-07 12:38:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 12:38:09] ANSI_COLOR="0;31"
[2026-02-07 12:38:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 12:38:09] HOME_URL="https://www.centos.org/"
[2026-02-07 12:38:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 12:38:09] 
[2026-02-07 12:38:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 12:38:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 12:38:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 12:38:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 12:38:09] 
[2026-02-07 12:38:09] 2026-02-07 18:37:39,346 | INFO     | **************************************
[2026-02-07 12:38:09] 2026-02-07 18:37:39,849 | INFO     | executing command: df -mP /data/boinc/slots/7
[2026-02-07 12:38:09] 2026-02-07 18:37:39,873 | INFO     | sufficient remaining disk space (409220415488 B)
[2026-02-07 12:38:09] 2026-02-07 18:37:39,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 12:38:09] 2026-02-07 18:37:39,873 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 12:38:09] 2026-02-07 18:37:39,873 | INFO     | update_server=False
[2026-02-07 12:38:09] 2026-02-07 18:37:39,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 12:38:09] 2026-02-07 18:37:39,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 12:38:09] 2026-02-07 18:37:39,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 12:38:09] 2026-02-07 18:37:40,107 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 12:38:09] 2026-02-07 18:37:40,108 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 12:38:09] 2026-02-07 18:37:40,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 12:38:09] 2026-02-07 18:37:40,108 | INFO     | will abort loop
[2026-02-07 12:38:09] 2026-02-07 18:37:40,540 | INFO     | all job control threads have been joined
[2026-02-07 12:38:09] 2026-02-07 18:37:40,860 | INFO     | all data control threads have been joined
[2026-02-07 12:38:09] 2026-02-07 18:37:40,878 | INFO     | [job] retrieve thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:40,879 | INFO     | [job] queue monitor thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,011 | INFO     | [data] copytool_in thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,013 | INFO     | all payload control threads have been joined
[2026-02-07 12:38:09] 2026-02-07 18:37:41,112 | INFO     | [job] job monitor thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 12:38:09] 2026-02-07 18:37:41,545 | INFO     | [job] control thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,777 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,861 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,865 | INFO     | [data] control thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:41,871 | INFO     | [job] validate thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:42,018 | INFO     | [payload] control thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:42,156 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:42,210 | INFO     | [payload] failed_post thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:42,222 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:42,402 | INFO     | [payload] validate_post thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:43,230 | INFO     | [data] copytool_out thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:43,879 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 12:38:09] 2026-02-07 18:37:47,931 | INFO     | [monitor] cgroup control has ended
[2026-02-07 12:38:09] 2026-02-07 18:37:49,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038326396736)>', '<ExcThread(monitor, started 140037467399936)>']
[2026-02-07 12:38:09] 2026-02-07 18:37:54,801 | INFO     | all workflow threads have been joined
[2026-02-07 12:38:09] 2026-02-07 18:37:54,802 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 12:38:09] 2026-02-07 18:37:54,802 | INFO     | traces error code: 0
[2026-02-07 12:38:09] 2026-02-07 18:37:54,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 12:38:09] 2026-02-07 18:38:09,331 | INFO     | PID=3630422 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 12:38:09] 2026-02-07 18:38:09,332 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 12:38:09] 2026-02-07 18:38:09,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 12:38:09] 2026-02-07 18:38:09,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 12:38:09] 2026-02-07 18:38:09,332 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 12:38:09] 2026-02-07 18:38:09,333 | INFO     | [monitor] control thread has ended
[2026-02-07 12:38:09] 2026-02-07 18:38:09,481 [wrapper] ==== pilot stdout END ====
[2026-02-07 12:38:09] 2026-02-07 18:38:09,484 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 12:38:09] 2026-02-07 18:38:09,487 [wrapper] pilotpid: 3630422
[2026-02-07 12:38:09] 2026-02-07 18:38:09,490 [wrapper] Pilot exit status: 0
[2026-02-07 12:38:09] 2026-02-07 18:38:09,505 [wrapper] pandaids: 6999412104
[2026-02-07 12:38:09] 2026-02-07 18:38:09,550 [wrapper] cleanup supervisor_pilot 3640526 3630423
[2026-02-07 12:38:09] 2026-02-07 18:38:09,554 [wrapper] Test setup, not cleaning
[2026-02-07 12:38:09] 2026-02-07 18:38:09,561 [wrapper] apfmon messages muted
[2026-02-07 12:38:09] 2026-02-07 18:38:09,565 [wrapper] ==== wrapper stdout END ====
[2026-02-07 12:38:09] 2026-02-07 18:38:09,569 [wrapper] ==== wrapper stderr END ====
[2026-02-07 12:38:09]  *** Error codes and diagnostics ***
[2026-02-07 12:38:09]     "exeErrorCode": 0,
[2026-02-07 12:38:09]     "exeErrorDiag": "",
[2026-02-07 12:38:09]     "pilotErrorCode": 1305,
[2026-02-07 12:38:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-02-07 12:38:09]  *** Listing of results directory ***
[2026-02-07 12:38:09] total 496552
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc    584627 Feb  6 23:41 pilot3.tar.gz
[2026-02-07 12:38:09] -rwx------ 1 boinc boinc     36322 Feb  6 23:43 runpilot2-wrapper.sh
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc      5111 Feb  6 23:45 queuedata.json
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc       100 Feb  7 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 12:38:09] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 11:54 run_atlas
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc       105 Feb  7 11:54 job.xml
[2026-02-07 12:38:09] -rw-r--r-- 2 boinc boinc 503277130 Feb  7 11:54 EVNT.48318032._000199.pool.root.1
[2026-02-07 12:38:09] -rw-r--r-- 2 boinc boinc    597955 Feb  7 11:54 input.tar.gz
[2026-02-07 12:38:09] -rw-r--r-- 2 boinc boinc     15845 Feb  7 11:54 start_atlas.sh
[2026-02-07 12:38:09] drwxrwx--x 2 boinc boinc      4096 Feb  7 11:54 shared
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc         0 Feb  7 11:54 boinc_setup_complete
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc      9286 Feb  7 11:54 init_data.xml
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc         0 Feb  7 11:54 boinc_lockfile
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc      2535 Feb  7 11:54 pandaJob.out
[2026-02-07 12:38:09] -rw------- 1 boinc boinc   1009494 Feb  7 11:54 agis_schedconf.cvmfs.json
[2026-02-07 12:38:09] -rw------- 1 boinc boinc   1513088 Feb  7 11:54 agis_ddmendpoints.agis.ALL.json
[2026-02-07 12:38:09] -rw------- 1 boinc boinc       420 Feb  7 11:54 workernode_map.json
[2026-02-07 12:38:09] drwx------ 5 boinc boinc      4096 Feb  7 11:54 pilot3
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc       529 Feb  7 12:35 boinc_task_state.xml
[2026-02-07 12:38:09] -rw------- 1 boinc boinc      1010 Feb  7 12:35 memory_monitor_summary.json
[2026-02-07 12:38:09] -rw------- 1 boinc boinc    222554 Feb  7 12:35 log.48318034._010457.job.log.tgz.1
[2026-02-07 12:38:09] -rw------- 1 boinc boinc      7918 Feb  7 12:37 heartbeat.json
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc        26 Feb  7 12:38 wrapper_checkpoint.txt
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc      8192 Feb  7 12:38 boinc_mmap_file
[2026-02-07 12:38:09] -rw------- 1 boinc boinc       747 Feb  7 12:38 pilotlog.txt
[2026-02-07 12:38:09] -rw------- 1 boinc boinc        95 Feb  7 12:38 pilot_heartbeat.json
[2026-02-07 12:38:09] -rw------- 1 boinc boinc    403857 Feb  7 12:38 log.48318034._010457.job.log.1
[2026-02-07 12:38:09] -rw------- 1 boinc boinc       188 Feb  7 12:38 output.list
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc       620 Feb  7 12:38 runtime_log
[2026-02-07 12:38:09] -rw------- 1 boinc boinc    645120 Feb  7 12:38 result.tar.gz
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc      8577 Feb  7 12:38 runtime_log.err
[2026-02-07 12:38:09] -rw------- 1 boinc boinc       640 Feb  7 12:38 7wgKDmjHq88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwnaKDmnl3uvn.diag
[2026-02-07 12:38:09] -rw-r--r-- 1 boinc boinc     21497 Feb  7 12:38 stderr.txt
[2026-02-07 12:38:09] No HITS result produced
[2026-02-07 12:38:09]  *** Contents of shared directory: ***
[2026-02-07 12:38:09] total 492720
[2026-02-07 12:38:09] -rw-r--r-- 2 boinc boinc 503277130 Feb  7 11:54 ATLAS.root_0
[2026-02-07 12:38:09] -rw-r--r-- 2 boinc boinc    597955 Feb  7 11:54 input.tar.gz
[2026-02-07 12:38:09] -rw-r--r-- 2 boinc boinc     15845 Feb  7 11:54 start_atlas.sh
[2026-02-07 12:38:09] -rw------- 1 boinc boinc    645120 Feb  7 12:38 result.tar.gz
12:38:11 (3626619): run_atlas exited; CPU time 8600.422065
12:38:11 (3626619): called boinc_finish(0)

</stderr_txt>
]]>

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