Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
06:59:30 (982338): wrapper (7.7.26015): starting
06:59:30 (982338): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 06:59:30] Arguments: --nthreads 12
[2026-02-08 06:59:30] Threads: 12
[2026-02-08 06:59:30] Checking for CVMFS
[2026-02-08 06:59:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 06:59:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 06:59:32] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 06:59:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 06:59:32] 2.12.7.0 5195 1713 64900 156018 1 51 3144275 4194304 917 130560 0 1808447 99.993 56795 2027 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-02-08 06:59:32] CVMFS is ok
[2026-02-08 06:59:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 06:59:32] Checking for apptainer binary...
[2026-02-08 06:59:32] apptainer is not installed, using version from CVMFS
[2026-02-08 06:59:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 06:59:32] Trebeth
[2026-02-08 06:59:32] apptainer works
[2026-02-08 06:59:32] Set ATHENA_PROC_NUMBER=12
[2026-02-08 06:59:32] Set ATHENA_CORE_NUMBER=12
[2026-02-08 06:59:32] Starting ATLAS job with PandaID=7000144162
[2026-02-08 06:59:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 08:07:09]  *** The last 200 lines of the pilot log: ***
[2026-02-08 08:07:09]  is_tar=False
[2026-02-08 08:07:09]  lfn=log.48466714._000986.job.log.tgz.1
[2026-02-08 08:07:09]  mtime=0
[2026-02-08 08:07:09]  protocol_id=None
[2026-02-08 08:07:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 08:07:09]  replicas=None
[2026-02-08 08:07:09]  scope=mc23_13p6TeV
[2026-02-08 08:07:09]  status=None
[2026-02-08 08:07:09]  status_code=0
[2026-02-08 08:07:09]  storage_token=
[2026-02-08 08:07:09]  surl=/var/lib/boinc-client/slots/8/PanDA_Pilot-7000144162/log.48466714._000986.job.log.tgz.1
[2026-02-08 08:07:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/a5/log.48466714._000986.job.log.tgz.1
[2026-02-08 08:07:09]  workdir=None
[2026-02-08 08:07:09] ]
[2026-02-08 08:07:09] 2026-02-08 13:06:07,192 | INFO     | transferring file log.48466714._000986.job.log.tgz.1 from /var/lib/boinc-client/slots/8/PanDA_Pilot-7000144162/log.48466714._000986.job.log.tgz.1 to /var/lib/boinc
[2026-02-08 08:07:09] 2026-02-08 13:06:07,192 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/8/PanDA_Pilot-7000144162/log.48466714._000986.job.log.tgz.1 /var/lib/boinc-client/slots/8/log.484667
[2026-02-08 08:07:09] 2026-02-08 13:06:07,206 | INFO     | adding to output.list: log.48466714._000986.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/a5/log.48466714._000986.job.log.tg
[2026-02-08 08:07:09] 2026-02-08 13:06:07,207 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 08:07:09] 2026-02-08 13:06:07,208 | INFO     | summary of transferred files:
[2026-02-08 08:07:09] 2026-02-08 13:06:07,208 | INFO     |  -- lfn=log.48466714._000986.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 08:07:09] 2026-02-08 13:06:07,208 | INFO     | stage-out finished correctly
[2026-02-08 08:07:09] 2026-02-08 13:06:07,425 | INFO     | PID=986710 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 08:07:09] 2026-02-08 13:06:07,425 | INFO     | .. there are 2 such processes running
[2026-02-08 08:07:09] 2026-02-08 13:06:08,425 | INFO     | time since job start (3971s) is within the limit (349056.0s)
[2026-02-08 08:07:09] 2026-02-08 13:06:10,067 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 08:07:09] 2026-02-08 13:06:10,428 | INFO     | time since job start (3973s) is within the limit (349056.0s)
[2026-02-08 08:07:09] 2026-02-08 13:06:10,471 | WARNING  | process 991553 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 08:07:09] 2026-02-08 13:06:10,472 | INFO     | using path: /var/lib/boinc-client/slots/8/PanDA_Pilot-7000144162/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 08:07:09] 2026-02-08 13:06:10,678 | INFO     | number of running child processes to parent process 991553: 1
[2026-02-08 08:07:09] 2026-02-08 13:06:10,679 | INFO     | maximum number of monitored processes: 6
[2026-02-08 08:07:09] 2026-02-08 13:06:11,844 | INFO     | job 7000144162 has state=finished
[2026-02-08 08:07:09] 2026-02-08 13:06:11,844 | INFO     | preparing for final server update for job 7000144162 in state='finished'
[2026-02-08 08:07:09] 2026-02-08 13:06:11,845 | INFO     | reading metadata from: /var/lib/boinc-client/slots/8/PanDA_Pilot-7000144162/jobReport.json
[2026-02-08 08:07:09] 2026-02-08 13:06:11,847 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/8/workernode_map.json
[2026-02-08 08:07:09] 2026-02-08 13:06:11,848 | INFO     | this job has now completed (state=finished)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,848 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,848 | INFO     | log transfer has been attempted: DONE
[2026-02-08 08:07:09] 2026-02-08 13:06:11,848 | INFO     | job 7000144162 has finished - writing final server update
[2026-02-08 08:07:09] 2026-02-08 13:06:11,849 | INFO     | total number of processed events: 400 (read)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,877 | INFO     | using path: /var/lib/boinc-client/slots/8/PanDA_Pilot-7000144162/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,878 | INFO     | extracted standard info from prmon json
[2026-02-08 08:07:09] 2026-02-08 13:06:11,878 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 08:07:09] 2026-02-08 13:06:11,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 08:07:09] 2026-02-08 13:06:11,878 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 08:07:09] 2026-02-08 13:06:11,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 08:07:09] 2026-02-08 13:06:11,880 | INFO     | fitting pss+swap vs Time
[2026-02-08 08:07:09] 2026-02-08 13:06:11,880 | INFO     | sum of square deviations: 60482994.5
[2026-02-08 08:07:09] 2026-02-08 13:06:11,881 | INFO     | sum of deviations: -3419776967.5000005
[2026-02-08 08:07:09] 2026-02-08 13:06:11,881 | INFO     | mean x: 1770554059.5
[2026-02-08 08:07:09] 2026-02-08 13:06:11,881 | INFO     | mean y: 2819470.3620689656
[2026-02-08 08:07:09] 2026-02-08 13:06:11,881 | INFO     | intersect: 100111950019.30878
[2026-02-08 08:07:09] 2026-02-08 13:06:11,881 | INFO     | chi2: 0.07032947067697062
[2026-02-08 08:07:09] 2026-02-08 13:06:11,881 | INFO     | current memory leak: -56.54 B/s (using 58 data points, chi2=0.07)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | could have reported an average CPU frequency of 3042 MHz (6 samples)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | ..............................
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . Timing measurements:
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . get job = 0 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . initial setup = 16 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . payload setup = 4 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . stage-in = 0 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . payload execution = 3950 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . stage-out = 0 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | . log creation = 0 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,882 | INFO     | ..............................
[2026-02-08 08:07:09] 2026-02-08 13:06:11,977 | INFO     | 
[2026-02-08 08:07:09] 2026-02-08 13:06:11,977 | INFO     | job summary report
[2026-02-08 08:07:09] 2026-02-08 13:06:11,977 | INFO     | --------------------------------------------------
[2026-02-08 08:07:09] 2026-02-08 13:06:11,977 | INFO     | PanDA job id: 7000144162
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | task id: 48466714
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | errors: (none)
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | pilot state: finished 
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | transexitcode: 0
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | exeerrorcode: 0
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | exeerrordiag: 
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | exitcode: 0
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | exitmsg: OK
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | cpuconsumptiontime: 41196 s
[2026-02-08 08:07:09] 2026-02-08 13:06:11,978 | INFO     | nevents: 400
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | neventsw: 0
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | pid: 991553
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | pgrp: 991553
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | corecount: 12
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | event service: False
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | sizes: {0: 2282575, 1: 2283036, 11: 2283036, 3958: 2308930, 3959: 2317942, 3962: 2317998, 3964: 2318320}
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | --------------------------------------------------
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | 
[2026-02-08 08:07:09] 2026-02-08 13:06:11,979 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/8
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,000 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,001 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 08:07:09] 2026-02-08 13:06:12,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,002 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 08:07:09] 2026-02-08 13:06:12,002 | INFO     | job 7000144162 has completed (purged errors)
[2026-02-08 08:07:09] 2026-02-08 13:06:12,002 | INFO     | overall cleanup function is called
[2026-02-08 08:07:09] 2026-02-08 13:06:13,008 | INFO     | --- collectZombieJob: --- 10, [991553]
[2026-02-08 08:07:09] 2026-02-08 13:06:13,008 | INFO     | zombie collector waiting for pid 991553
[2026-02-08 08:07:09] 2026-02-08 13:06:13,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 08:07:09] 2026-02-08 13:06:13,009 | INFO     | collected zombie processes
[2026-02-08 08:07:09] 2026-02-08 13:06:13,009 | INFO     | will attempt to kill all subprocesses of pid=991553
[2026-02-08 08:07:09] 2026-02-08 13:06:13,209 | INFO     | process IDs to be killed: [991553] (in reverse order)
[2026-02-08 08:07:09] 2026-02-08 13:06:13,272 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 08:07:09] 2026-02-08 13:06:13,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 08:07:09] 2026-02-08 13:06:13,277 | INFO     | did not find any defunct processes belonging to 991553
[2026-02-08 08:07:09] 2026-02-08 13:06:13,282 | INFO     | did not find any defunct processes belonging to 991553
[2026-02-08 08:07:09] 2026-02-08 13:06:13,282 | INFO     | ready for new job
[2026-02-08 08:07:09] 2026-02-08 13:06:13,282 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 08:07:09] 2026-02-08 13:06:13,284 | INFO     | **************************************
[2026-02-08 08:07:09] 2026-02-08 13:06:13,284 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 08:07:09] 2026-02-08 13:06:13,284 | INFO     | **************************************
[2026-02-08 08:07:09] 2026-02-08 13:06:13,284 | INFO     | 
[2026-02-08 08:07:09] 2026-02-08 13:06:13,311 | INFO     | architecture information:
[2026-02-08 08:07:09] 2026-02-08 13:06:13,311 | INFO     | executing command: cat /etc/os-release
[2026-02-08 08:07:09] 2026-02-08 13:06:13,325 | INFO     | cat /etc/os-release:
[2026-02-08 08:07:09] NAME="CentOS Linux"
[2026-02-08 08:07:09] VERSION="7 (Core)"
[2026-02-08 08:07:09] ID="centos"
[2026-02-08 08:07:09] ID_LIKE="rhel fedora"
[2026-02-08 08:07:09] VERSION_ID="7"
[2026-02-08 08:07:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 08:07:09] ANSI_COLOR="0;31"
[2026-02-08 08:07:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 08:07:09] HOME_URL="https://www.centos.org/"
[2026-02-08 08:07:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 08:07:09] 
[2026-02-08 08:07:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 08:07:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 08:07:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 08:07:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 08:07:09] 
[2026-02-08 08:07:09] 2026-02-08 13:06:13,326 | INFO     | **************************************
[2026-02-08 08:07:09] 2026-02-08 13:06:13,828 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/8
[2026-02-08 08:07:09] 2026-02-08 13:06:13,842 | INFO     | sufficient remaining disk space (371516768256 B)
[2026-02-08 08:07:09] 2026-02-08 13:06:13,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 08:07:09] 2026-02-08 13:06:13,843 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 08:07:09] 2026-02-08 13:06:13,843 | INFO     | update_server=False
[2026-02-08 08:07:09] 2026-02-08 13:06:13,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 08:07:09] 2026-02-08 13:06:13,843 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 08:07:09] 2026-02-08 13:06:13,936 | INFO     | all data control threads have been joined
[2026-02-08 08:07:09] 2026-02-08 13:06:14,004 | INFO     | all job control threads have been joined
[2026-02-08 08:07:09] 2026-02-08 13:06:14,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 08:07:09] 2026-02-08 13:06:14,184 | INFO     | aborting loop
[2026-02-08 08:07:09] 2026-02-08 13:06:14,238 | INFO     | all payload control threads have been joined
[2026-02-08 08:07:09] 2026-02-08 13:06:14,848 | INFO     | [job] retrieve thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:14,848 | INFO     | [job] queue monitor thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:14,932 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:14,940 | INFO     | [data] control thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:15,008 | INFO     | [job] control thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:15,028 | INFO     | [data] copytool_in thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:15,188 | INFO     | [job] job monitor thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:15,240 | INFO     | [payload] control thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:15,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 08:07:09] 2026-02-08 13:06:15,528 | INFO     | [payload] validate_post thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:15,902 | INFO     | [job] validate thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:16,144 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:16,155 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 08:07:09] 2026-02-08 13:06:16,212 | INFO     | [payload] failed_post thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:16,300 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:17,316 | INFO     | [data] copytool_out thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:20,160 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:24,508 | INFO     | job.realtimelogging is not enabled
[2026-02-08 08:07:09] 2026-02-08 13:06:25,512 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 08:07:09] 2026-02-08 13:06:43,707 | INFO     | PID=986710 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 08:07:09] 2026-02-08 13:06:43,707 | INFO     | .. there are 2 such processes running
[2026-02-08 08:07:09] 2026-02-08 13:06:43,708 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 08:07:09] 2026-02-08 13:06:43,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 08:07:09] 2026-02-08 13:06:43,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 08:07:09] 2026-02-08 13:07:03,176 | INFO     | [monitor] cgroup control has ended
[2026-02-08 08:07:09] 2026-02-08 13:07:04,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064783185728)>', '<ExcThread(monitor, started 140064336090880)>']
[2026-02-08 08:07:09] 2026-02-08 13:07:04,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 08:07:09] 2026-02-08 13:07:04,792 | INFO     | [monitor] control thread has ended
[2026-02-08 08:07:09] 2026-02-08 13:07:09,649 | INFO     | all workflow threads have been joined
[2026-02-08 08:07:09] 2026-02-08 13:07:09,649 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 08:07:09] 2026-02-08 13:07:09,650 | INFO     | traces error code: 0
[2026-02-08 08:07:09] 2026-02-08 13:07:09,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 08:07:09] 2026-02-08 13:07:09,760 [wrapper] ==== pilot stdout END ====
[2026-02-08 08:07:09] 2026-02-08 13:07:09,762 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 08:07:09] 2026-02-08 13:07:09,764 [wrapper] pilotpid: 986710
[2026-02-08 08:07:09] 2026-02-08 13:07:09,766 [wrapper] Pilot exit status: 0
[2026-02-08 08:07:09] 2026-02-08 13:07:09,773 [wrapper] pandaids: 7000144162
[2026-02-08 08:07:09] 2026-02-08 13:07:09,813 [wrapper] cleanup supervisor_pilot 1021745 986711
[2026-02-08 08:07:09] 2026-02-08 13:07:09,815 [wrapper] Test setup, not cleaning
[2026-02-08 08:07:09] 2026-02-08 13:07:09,816 [wrapper] apfmon messages muted
[2026-02-08 08:07:09] 2026-02-08 13:07:09,819 [wrapper] ==== wrapper stdout END ====
[2026-02-08 08:07:09] 2026-02-08 13:07:09,820 [wrapper] ==== wrapper stderr END ====
[2026-02-08 08:07:09]  *** Error codes and diagnostics ***
[2026-02-08 08:07:09]     "exeErrorCode": 0,
[2026-02-08 08:07:09]     "exeErrorDiag": "",
[2026-02-08 08:07:09]     "pilotErrorCode": 0,
[2026-02-08 08:07:09]     "pilotErrorDiag": "",
[2026-02-08 08:07:09]  *** Listing of results directory ***
[2026-02-08 08:07:09] total 725028
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc    584627 Feb  7 00:41 pilot3.tar.gz
[2026-02-08 08:07:09] -rwx------ 1 boinc boinc     36322 Feb  7 00:42 runpilot2-wrapper.sh
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc      5111 Feb  7 00:43 queuedata.json
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc       100 Feb  8 06:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 08:07:09] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 06:59 run_atlas
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc       105 Feb  8 06:59 job.xml
[2026-02-08 08:07:09] -rw-r--r-- 2 boinc boinc     15845 Feb  8 06:59 start_atlas.sh
[2026-02-08 08:07:09] drwxrwx--x 2 boinc boinc      4096 Feb  8 06:59 shared
[2026-02-08 08:07:09] -rw-r--r-- 2 boinc boinc    597939 Feb  8 06:59 input.tar.gz
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc      7579 Feb  8 06:59 init_data.xml
[2026-02-08 08:07:09] -rw-r--r-- 2 boinc boinc 538499855 Feb  8 06:59 EVNT.48466711._000020.pool.root.1
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc         0 Feb  8 06:59 boinc_lockfile
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc      2496 Feb  8 06:59 pandaJob.out
[2026-02-08 08:07:09] -rw------- 1 boinc boinc        50 Feb  8 06:59 setup.sh.local
[2026-02-08 08:07:09] -rw------- 1 boinc boinc   1009518 Feb  8 06:59 agis_schedconf.cvmfs.json
[2026-02-08 08:07:09] -rw------- 1 boinc boinc   1513088 Feb  8 06:59 agis_ddmendpoints.agis.ALL.json
[2026-02-08 08:07:09] -rw------- 1 boinc boinc       430 Feb  8 06:59 workernode_map.json
[2026-02-08 08:07:09] drwx------ 5 boinc boinc      4096 Feb  8 06:59 pilot3
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc       530 Feb  8 08:05 boinc_task_state.xml
[2026-02-08 08:07:09] -rw------- 1 boinc boinc 197974469 Feb  8 08:05 HITS.48466714._000986.pool.root.1
[2026-02-08 08:07:09] -rw------- 1 boinc boinc      1027 Feb  8 08:06 memory_monitor_summary.json
[2026-02-08 08:07:09] -rw------- 1 boinc boinc    405225 Feb  8 08:06 log.48466714._000986.job.log.tgz.1
[2026-02-08 08:07:09] -rw------- 1 boinc boinc      6344 Feb  8 08:06 heartbeat.json
[2026-02-08 08:07:09] -rw------- 1 boinc boinc        95 Feb  8 08:06 pilot_heartbeat.json
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc      8192 Feb  8 08:07 boinc_mmap_file
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc        27 Feb  8 08:07 wrapper_checkpoint.txt
[2026-02-08 08:07:09] -rw------- 1 boinc boinc      4898 Feb  8 08:07 pilotlog.txt
[2026-02-08 08:07:09] -rw------- 1 boinc boinc    601784 Feb  8 08:07 log.48466714._000986.job.log.1
[2026-02-08 08:07:09] -rw------- 1 boinc boinc       357 Feb  8 08:07 output.list
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc       620 Feb  8 08:07 runtime_log
[2026-02-08 08:07:09] -rw------- 1 boinc boinc   1024000 Feb  8 08:07 result.tar.gz
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc      9403 Feb  8 08:07 runtime_log.err
[2026-02-08 08:07:09] -rw------- 1 boinc boinc       650 Feb  8 08:07 d9sMDmgGq88n9Rq4apOajLDm4fhM0noT9bVooX4SDmmRaKDmFvZKQn.diag
[2026-02-08 08:07:09] -rw-r--r-- 1 boinc boinc     21388 Feb  8 08:07 stderr.txt
[2026-02-08 08:07:09] HITS file was successfully produced:
[2026-02-08 08:07:09] -rw------- 1 boinc boinc 197974469 Feb  8 08:05 shared/HITS.pool.root.1
[2026-02-08 08:07:09]  *** Contents of shared directory: ***
[2026-02-08 08:07:09] total 720824
[2026-02-08 08:07:09] -rw-r--r-- 2 boinc boinc     15845 Feb  8 06:59 start_atlas.sh
[2026-02-08 08:07:09] -rw-r--r-- 2 boinc boinc    597939 Feb  8 06:59 input.tar.gz
[2026-02-08 08:07:09] -rw-r--r-- 2 boinc boinc 538499855 Feb  8 06:59 ATLAS.root_0
[2026-02-08 08:07:09] -rw------- 1 boinc boinc 197974469 Feb  8 08:05 HITS.pool.root.1
[2026-02-08 08:07:09] -rw------- 1 boinc boinc   1024000 Feb  8 08:07 result.tar.gz
08:07:11 (982338): run_atlas exited; CPU time 41262.294695
08:07:11 (982338): called boinc_finish(0)

</stderr_txt>
]]>

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