Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
10:51:05 (1128175): wrapper (7.7.26015): starting
10:51:05 (1128175): wrapper: running run_atlas (--nthreads 12)
[2026-02-08 10:51:05] Arguments: --nthreads 12
[2026-02-08 10:51:05] Threads: 12
[2026-02-08 10:51:05] Checking for CVMFS
[2026-02-08 10:51:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 10:51:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 10:51:06] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 10:51:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 10:51:06] 2.12.7.0 5195 1944 65424 156024 2 188 3171280 4194304 917 130560 0 2084354 99.994 63722 2121 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-02-08 10:51:06] CVMFS is ok
[2026-02-08 10:51:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 10:51:06] Checking for apptainer binary...
[2026-02-08 10:51:06] apptainer is not installed, using version from CVMFS
[2026-02-08 10:51:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 10:51:06] Trebeth
[2026-02-08 10:51:06] apptainer works
[2026-02-08 10:51:06] Set ATHENA_PROC_NUMBER=12
[2026-02-08 10:51:06] Set ATHENA_CORE_NUMBER=12
[2026-02-08 10:51:06] Starting ATLAS job with PandaID=7000739873
[2026-02-08 10:51:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 12:23:35]  *** The last 200 lines of the pilot log: ***
[2026-02-08 12:23:35]  lfn=log.48431113._004685.job.log.tgz.1
[2026-02-08 12:23:35]  mtime=0
[2026-02-08 12:23:35]  protocol_id=None
[2026-02-08 12:23:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 12:23:35]  replicas=None
[2026-02-08 12:23:35]  scope=mc23_13p6TeV
[2026-02-08 12:23:35]  status=None
[2026-02-08 12:23:35]  status_code=0
[2026-02-08 12:23:35]  storage_token=
[2026-02-08 12:23:35]  surl=/var/lib/boinc-client/slots/9/PanDA_Pilot-7000739873/log.48431113._004685.job.log.tgz.1
[2026-02-08 12:23:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/db/log.48431113._004685.job.log.tgz.1
[2026-02-08 12:23:35]  workdir=None
[2026-02-08 12:23:35] ]
[2026-02-08 12:23:35] 2026-02-08 17:22:38,995 | INFO     | transferring file log.48431113._004685.job.log.tgz.1 from /var/lib/boinc-client/slots/9/PanDA_Pilot-7000739873/log.48431113._004685.job.log.tgz.1 to /var/lib/boinc
[2026-02-08 12:23:35] 2026-02-08 17:22:38,996 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/9/PanDA_Pilot-7000739873/log.48431113._004685.job.log.tgz.1 /var/lib/boinc-client/slots/9/log.484311
[2026-02-08 12:23:35] 2026-02-08 17:22:39,011 | INFO     | adding to output.list: log.48431113._004685.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/db/log.48431113._004685.job.log.tg
[2026-02-08 12:23:35] 2026-02-08 17:22:39,012 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 12:23:35] 2026-02-08 17:22:39,012 | INFO     | summary of transferred files:
[2026-02-08 12:23:35] 2026-02-08 17:22:39,012 | INFO     |  -- lfn=log.48431113._004685.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 12:23:35] 2026-02-08 17:22:39,012 | INFO     | stage-out finished correctly
[2026-02-08 12:23:35] 2026-02-08 17:22:39,282 | INFO     | time since job start (5479s) is within the limit (349056.0s)
[2026-02-08 12:23:35] 2026-02-08 17:22:41,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 12:23:35] 2026-02-08 17:22:41,289 | INFO     | time since job start (5481s) is within the limit (349056.0s)
[2026-02-08 12:23:35] 2026-02-08 17:22:43,304 | INFO     | time since job start (5483s) is within the limit (349056.0s)
[2026-02-08 12:23:35] 2026-02-08 17:22:43,524 | WARNING  | process 1137358 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 12:23:35] 2026-02-08 17:22:43,525 | INFO     | using path: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000739873/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 12:23:35] 2026-02-08 17:22:43,724 | INFO     | number of running child processes to parent process 1137358: 1
[2026-02-08 12:23:35] 2026-02-08 17:22:43,724 | INFO     | maximum number of monitored processes: 6
[2026-02-08 12:23:35] 2026-02-08 17:22:44,268 | INFO     | job 7000739873 has state=finished
[2026-02-08 12:23:35] 2026-02-08 17:22:44,268 | INFO     | preparing for final server update for job 7000739873 in state='finished'
[2026-02-08 12:23:35] 2026-02-08 17:22:44,268 | INFO     | reading metadata from: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000739873/jobReport.json
[2026-02-08 12:23:35] 2026-02-08 17:22:44,270 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/9/workernode_map.json
[2026-02-08 12:23:35] 2026-02-08 17:22:44,270 | INFO     | this job has now completed (state=finished)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,270 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,270 | INFO     | log transfer has been attempted: DONE
[2026-02-08 12:23:35] 2026-02-08 17:22:44,270 | INFO     | job 7000739873 has finished - writing final server update
[2026-02-08 12:23:35] 2026-02-08 17:22:44,270 | INFO     | total number of processed events: 400 (read)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,297 | INFO     | using path: /var/lib/boinc-client/slots/9/PanDA_Pilot-7000739873/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,297 | INFO     | extracted standard info from prmon json
[2026-02-08 12:23:35] 2026-02-08 17:22:44,298 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 12:23:35] 2026-02-08 17:22:44,298 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 12:23:35] 2026-02-08 17:22:44,298 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 12:23:35] 2026-02-08 17:22:44,298 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 12:23:35] 2026-02-08 17:22:44,300 | INFO     | fitting pss+swap vs Time
[2026-02-08 12:23:35] 2026-02-08 17:22:44,300 | INFO     | sum of square deviations: 177275882.0
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | sum of deviations: -350795017.9999994
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | mean x: 1770568705.0
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | mean y: 2774853.879518072
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | intersect: 3506391215.752763
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | chi2: 0.13888643591691435
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | current memory leak: -1.98 B/s (using 83 data points, chi2=0.14)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,301 | INFO     | could have reported an average CPU frequency of 2993 MHz (7 samples)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | ..............................
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . Timing measurements:
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . get job = 0 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . initial setup = 5 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . payload setup = 4 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . stage-in = 0 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . payload execution = 5457 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . stage-out = 0 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | . log creation = 0 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,302 | INFO     | ..............................
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | 
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | job summary report
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | --------------------------------------------------
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | PanDA job id: 7000739873
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | task id: 48431113
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | errors: (none)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | pilot state: finished 
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | transexitcode: 0
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | exeerrorcode: 0
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | exeerrordiag: 
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | exitcode: 0
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | exitmsg: OK
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | cpuconsumptiontime: 58812 s
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | nevents: 400
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | neventsw: 0
[2026-02-08 12:23:35] 2026-02-08 17:22:44,389 | INFO     | pid: 1137358
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | pgrp: 1137358
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | corecount: 12
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | event service: False
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | sizes: {0: 2282748, 1: 2283152, 11: 2283152, 5466: 2309777, 5468: 2318789, 5470: 2318845, 5473: 2319167}
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | --------------------------------------------------
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | 
[2026-02-08 12:23:35] 2026-02-08 17:22:44,390 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/9
[2026-02-08 12:23:35] 2026-02-08 17:22:44,407 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,409 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 12:23:35] 2026-02-08 17:22:44,409 | INFO     | job 7000739873 has completed (purged errors)
[2026-02-08 12:23:35] 2026-02-08 17:22:44,409 | INFO     | overall cleanup function is called
[2026-02-08 12:23:35] 2026-02-08 17:22:45,412 | INFO     | --- collectZombieJob: --- 10, [1137358]
[2026-02-08 12:23:35] 2026-02-08 17:22:45,412 | INFO     | zombie collector waiting for pid 1137358
[2026-02-08 12:23:35] 2026-02-08 17:22:45,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 12:23:35] 2026-02-08 17:22:45,412 | INFO     | collected zombie processes
[2026-02-08 12:23:35] 2026-02-08 17:22:45,412 | INFO     | will attempt to kill all subprocesses of pid=1137358
[2026-02-08 12:23:35] 2026-02-08 17:22:45,585 | INFO     | process IDs to be killed: [1137358] (in reverse order)
[2026-02-08 12:23:35] 2026-02-08 17:22:45,648 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 12:23:35] 2026-02-08 17:22:45,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 12:23:35] 2026-02-08 17:22:45,656 | INFO     | did not find any defunct processes belonging to 1137358
[2026-02-08 12:23:35] 2026-02-08 17:22:45,661 | INFO     | did not find any defunct processes belonging to 1137358
[2026-02-08 12:23:35] 2026-02-08 17:22:45,661 | INFO     | ready for new job
[2026-02-08 12:23:35] 2026-02-08 17:22:45,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 12:23:35] 2026-02-08 17:22:45,663 | INFO     | **************************************
[2026-02-08 12:23:35] 2026-02-08 17:22:45,663 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 12:23:35] 2026-02-08 17:22:45,663 | INFO     | **************************************
[2026-02-08 12:23:35] 2026-02-08 17:22:45,663 | INFO     | 
[2026-02-08 12:23:35] 2026-02-08 17:22:45,683 | INFO     | architecture information:
[2026-02-08 12:23:35] 2026-02-08 17:22:45,683 | INFO     | executing command: cat /etc/os-release
[2026-02-08 12:23:35] 2026-02-08 17:22:45,695 | INFO     | cat /etc/os-release:
[2026-02-08 12:23:35] NAME="CentOS Linux"
[2026-02-08 12:23:35] VERSION="7 (Core)"
[2026-02-08 12:23:35] ID="centos"
[2026-02-08 12:23:35] ID_LIKE="rhel fedora"
[2026-02-08 12:23:35] VERSION_ID="7"
[2026-02-08 12:23:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 12:23:35] ANSI_COLOR="0;31"
[2026-02-08 12:23:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 12:23:35] HOME_URL="https://www.centos.org/"
[2026-02-08 12:23:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 12:23:35] 
[2026-02-08 12:23:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 12:23:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 12:23:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 12:23:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 12:23:35] 
[2026-02-08 12:23:35] 2026-02-08 17:22:45,695 | INFO     | **************************************
[2026-02-08 12:23:35] 2026-02-08 17:22:46,198 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2026-02-08 12:23:35] 2026-02-08 17:22:46,211 | INFO     | sufficient remaining disk space (372448952320 B)
[2026-02-08 12:23:35] 2026-02-08 17:22:46,211 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 12:23:35] 2026-02-08 17:22:46,212 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 12:23:35] 2026-02-08 17:22:46,212 | INFO     | update_server=False
[2026-02-08 12:23:35] 2026-02-08 17:22:46,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 12:23:35] 2026-02-08 17:22:46,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 12:23:35] 2026-02-08 17:22:46,227 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-08 12:23:35] 2026-02-08 17:22:46,228 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-08 12:23:35] 2026-02-08 17:22:46,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 12:23:35] 2026-02-08 17:22:46,228 | INFO     | will abort loop
[2026-02-08 12:23:35] 2026-02-08 17:22:46,318 | INFO     | all payload control threads have been joined
[2026-02-08 12:23:35] 2026-02-08 17:22:47,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 12:23:35] 2026-02-08 17:22:47,132 | INFO     | all data control threads have been joined
[2026-02-08 12:23:35] 2026-02-08 17:22:47,216 | INFO     | [job] queue monitor thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,217 | INFO     | [job] retrieve thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,233 | INFO     | [job] job monitor thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,288 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,324 | INFO     | [payload] control thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,324 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 12:23:35] 2026-02-08 17:22:47,548 | INFO     | [data] copytool_in thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,740 | INFO     | [payload] validate_post thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:47,756 | INFO     | all job control threads have been joined
[2026-02-08 12:23:35] 2026-02-08 17:22:48,138 | INFO     | [data] control thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:48,404 | INFO     | [job] validate thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:48,536 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:48,672 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:48,760 | INFO     | [job] control thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:48,764 | INFO     | [payload] failed_post thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:49,112 | INFO     | [data] copytool_out thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:51,330 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:22:56,820 | INFO     | job.realtimelogging is not enabled
[2026-02-08 12:23:35] 2026-02-08 17:22:57,824 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 12:23:35] 2026-02-08 17:23:16,639 | INFO     | PID=1132538 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 12:23:35] 2026-02-08 17:23:16,640 | INFO     | .. there are 2 such processes running
[2026-02-08 12:23:35] 2026-02-08 17:23:16,640 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 12:23:35] 2026-02-08 17:23:16,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 12:23:35] 2026-02-08 17:23:16,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 12:23:35] 2026-02-08 17:23:28,788 | INFO     | [monitor] cgroup control has ended
[2026-02-08 12:23:35] 2026-02-08 17:23:30,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238529541952)>', '<ExcThread(monitor, started 140238223550208)>']
[2026-02-08 12:23:35] 2026-02-08 17:23:30,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 12:23:35] 2026-02-08 17:23:30,688 | INFO     | [monitor] control thread has ended
[2026-02-08 12:23:35] 2026-02-08 17:23:35,544 | INFO     | all workflow threads have been joined
[2026-02-08 12:23:35] 2026-02-08 17:23:35,544 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 12:23:35] 2026-02-08 17:23:35,545 | INFO     | traces error code: 0
[2026-02-08 12:23:35] 2026-02-08 17:23:35,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 12:23:35] 2026-02-08 17:23:35,645 [wrapper] ==== pilot stdout END ====
[2026-02-08 12:23:35] 2026-02-08 17:23:35,647 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 12:23:35] 2026-02-08 17:23:35,648 [wrapper] pilotpid: 1132538
[2026-02-08 12:23:35] 2026-02-08 17:23:35,650 [wrapper] Pilot exit status: 0
[2026-02-08 12:23:35] 2026-02-08 17:23:35,656 [wrapper] pandaids: 7000739873
[2026-02-08 12:23:35] 2026-02-08 17:23:35,696 [wrapper] cleanup supervisor_pilot 1173526 1132539
[2026-02-08 12:23:35] 2026-02-08 17:23:35,698 [wrapper] Test setup, not cleaning
[2026-02-08 12:23:35] 2026-02-08 17:23:35,699 [wrapper] apfmon messages muted
[2026-02-08 12:23:35] 2026-02-08 17:23:35,700 [wrapper] ==== wrapper stdout END ====
[2026-02-08 12:23:35] 2026-02-08 17:23:35,702 [wrapper] ==== wrapper stderr END ====
[2026-02-08 12:23:35]  *** Error codes and diagnostics ***
[2026-02-08 12:23:35]     "exeErrorCode": 0,
[2026-02-08 12:23:35]     "exeErrorDiag": "",
[2026-02-08 12:23:35]     "pilotErrorCode": 0,
[2026-02-08 12:23:35]     "pilotErrorDiag": "",
[2026-02-08 12:23:35]  *** Listing of results directory ***
[2026-02-08 12:23:35] total 901320
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc    584627 Feb  7 06:17 pilot3.tar.gz
[2026-02-08 12:23:35] -rwx------ 1 boinc boinc     36322 Feb  7 06:18 runpilot2-wrapper.sh
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc      5111 Feb  7 06:20 queuedata.json
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc       100 Feb  8 10:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 12:23:35] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 10:51 run_atlas
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc       105 Feb  8 10:51 job.xml
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc      7579 Feb  8 10:51 init_data.xml
[2026-02-08 12:23:35] -rw-r--r-- 2 boinc boinc 653502557 Feb  8 10:51 EVNT.48431111._000093.pool.root.1
[2026-02-08 12:23:35] -rw-r--r-- 2 boinc boinc     15845 Feb  8 10:51 start_atlas.sh
[2026-02-08 12:23:35] drwxrwx--x 2 boinc boinc      4096 Feb  8 10:51 shared
[2026-02-08 12:23:35] -rw-r--r-- 2 boinc boinc    597955 Feb  8 10:51 input.tar.gz
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc         0 Feb  8 10:51 boinc_lockfile
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc      2544 Feb  8 10:51 pandaJob.out
[2026-02-08 12:23:35] -rw------- 1 boinc boinc        50 Feb  8 10:51 setup.sh.local
[2026-02-08 12:23:35] -rw------- 1 boinc boinc   1009488 Feb  8 10:51 agis_schedconf.cvmfs.json
[2026-02-08 12:23:35] -rw------- 1 boinc boinc   1513088 Feb  8 10:51 agis_ddmendpoints.agis.ALL.json
[2026-02-08 12:23:35] -rw------- 1 boinc boinc       429 Feb  8 10:51 workernode_map.json
[2026-02-08 12:23:35] drwx------ 5 boinc boinc      4096 Feb  8 10:51 pilot3
[2026-02-08 12:23:35] -rw------- 1 boinc boinc 263102408 Feb  8 12:22 HITS.48431113._004685.pool.root.1
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc       530 Feb  8 12:22 boinc_task_state.xml
[2026-02-08 12:23:35] -rw------- 1 boinc boinc        95 Feb  8 12:22 pilot_heartbeat.json
[2026-02-08 12:23:35] -rw------- 1 boinc boinc      1026 Feb  8 12:22 memory_monitor_summary.json
[2026-02-08 12:23:35] -rw------- 1 boinc boinc    390913 Feb  8 12:22 log.48431113._004685.job.log.tgz.1
[2026-02-08 12:23:35] -rw------- 1 boinc boinc      6332 Feb  8 12:22 heartbeat.json
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc        27 Feb  8 12:23 wrapper_checkpoint.txt
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc      8192 Feb  8 12:23 boinc_mmap_file
[2026-02-08 12:23:35] -rw------- 1 boinc boinc      5085 Feb  8 12:23 pilotlog.txt
[2026-02-08 12:23:35] -rw------- 1 boinc boinc    810649 Feb  8 12:23 log.48431113._004685.job.log.1
[2026-02-08 12:23:35] -rw------- 1 boinc boinc       357 Feb  8 12:23 output.list
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc       620 Feb  8 12:23 runtime_log
[2026-02-08 12:23:35] -rw------- 1 boinc boinc   1218560 Feb  8 12:23 result.tar.gz
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc      9403 Feb  8 12:23 runtime_log.err
[2026-02-08 12:23:35] -rw------- 1 boinc boinc       651 Feb  8 12:23 BCFODmwVv88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvBbKDmhbefwm.diag
[2026-02-08 12:23:35] -rw-r--r-- 1 boinc boinc     21393 Feb  8 12:23 stderr.txt
[2026-02-08 12:23:35] HITS file was successfully produced:
[2026-02-08 12:23:35] -rw------- 1 boinc boinc 263102408 Feb  8 12:22 shared/HITS.pool.root.1
[2026-02-08 12:23:35]  *** Contents of shared directory: ***
[2026-02-08 12:23:35] total 896924
[2026-02-08 12:23:35] -rw-r--r-- 2 boinc boinc 653502557 Feb  8 10:51 ATLAS.root_0
[2026-02-08 12:23:35] -rw-r--r-- 2 boinc boinc     15845 Feb  8 10:51 start_atlas.sh
[2026-02-08 12:23:35] -rw-r--r-- 2 boinc boinc    597955 Feb  8 10:51 input.tar.gz
[2026-02-08 12:23:35] -rw------- 1 boinc boinc 263102408 Feb  8 12:22 HITS.pool.root.1
[2026-02-08 12:23:35] -rw------- 1 boinc boinc   1218560 Feb  8 12:23 result.tar.gz
12:23:37 (1128175): run_atlas exited; CPU time 58907.971201
12:23:37 (1128175): called boinc_finish(0)

</stderr_txt>
]]>

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