Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:16:02 (2878): wrapper (7.7.26015): starting
16:16:02 (2878): wrapper: running run_atlas (--nthreads 8)
[2026-02-07 16:16:02] Arguments: --nthreads 8
[2026-02-07 16:16:02] Threads: 8
[2026-02-07 16:16:02] Checking for CVMFS
[2026-02-07 16:16:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 16:16:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 16:16:02] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 16:16:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 16:16:04] 2.11.0.0 4202 171373 74888 155988 2 50 2914416 4096001 1927 130560 3 4712931 99.007 11534354 498 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-07 16:16:04] CVMFS is ok
[2026-02-07 16:16:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 16:16:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 16:16:04] Further information can be found at the LHC@home message board.
[2026-02-07 16:16:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 16:16:04] Checking for apptainer binary...
[2026-02-07 16:16:04] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-07 16:16:04] apptainer is not installed, using version from CVMFS
[2026-02-07 16:16:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 16:16:04] WARNING: Environment variable TMPDIR already has value [/tmp/job_11081675/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node336
[2026-02-07 16:16:04] apptainer works
[2026-02-07 16:16:04] Set ATHENA_PROC_NUMBER=8
[2026-02-07 16:16:04] Set ATHENA_CORE_NUMBER=8
[2026-02-07 16:16:04] Starting ATLAS job with PandaID=7004736515
[2026-02-07 16:16:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11081675/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 17:22:24]  *** The last 200 lines of the pilot log: ***
[2026-02-07 17:22:24]  is_altstaged=None
[2026-02-07 17:22:24]  is_tar=False
[2026-02-07 17:22:24]  lfn=log.48431080._013142.job.log.tgz.1
[2026-02-07 17:22:24]  mtime=0
[2026-02-07 17:22:24]  protocol_id=None
[2026-02-07 17:22:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 17:22:24]  replicas=None
[2026-02-07 17:22:24]  scope=mc23_13p6TeV
[2026-02-07 17:22:24]  status=None
[2026-02-07 17:22:24]  status_code=0
[2026-02-07 17:22:24]  storage_token=
[2026-02-07 17:22:24]  surl=/tmp/job_11081675/atlas/pilot/slots/0/PanDA_Pilot-7004736515/log.48431080._013142.job.log.tgz.1
[2026-02-07 17:22:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/ae/log.48431080._013142.job.log.tgz.1
[2026-02-07 17:22:24]  workdir=None
[2026-02-07 17:22:24] ]
[2026-02-07 17:22:24] 2026-02-07 16:21:17,966 | INFO     | transferring file log.48431080._013142.job.log.tgz.1 from /tmp/job_11081675/atlas/pilot/slots/0/PanDA_Pilot-7004736515/log.48431080._013142.job.log.tgz.1 to /tmp/j
[2026-02-07 17:22:24] 2026-02-07 16:21:17,966 | INFO     | executing command: /usr/bin/env mv /tmp/job_11081675/atlas/pilot/slots/0/PanDA_Pilot-7004736515/log.48431080._013142.job.log.tgz.1 /tmp/job_11081675/atlas/pilot/sl
[2026-02-07 17:22:24] 2026-02-07 16:21:17,974 | INFO     | adding to output.list: log.48431080._013142.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/ae/log.48431080._013142.job.log.tg
[2026-02-07 17:22:24] 2026-02-07 16:21:17,975 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 17:22:24] 2026-02-07 16:21:17,975 | INFO     | summary of transferred files:
[2026-02-07 17:22:24] 2026-02-07 16:21:17,975 | INFO     |  -- lfn=log.48431080._013142.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 17:22:24] 2026-02-07 16:21:17,975 | INFO     | stage-out finished correctly
[2026-02-07 17:22:24] 2026-02-07 16:21:18,853 | INFO     | monitor loop #297: job 0:7004736515 is in state 'finished'
[2026-02-07 17:22:24] 2026-02-07 16:21:18,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 17:22:24] 2026-02-07 16:21:19,450 | INFO     | time since job start (3908s) is within the limit (349056.0s)
[2026-02-07 17:22:24] 2026-02-07 16:21:20,639 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 17:22:24] 2026-02-07 16:21:21,356 | INFO     | monitor loop #298: job 0:7004736515 is in state 'finished'
[2026-02-07 17:22:24] 2026-02-07 16:21:21,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,455 | INFO     | time since job start (3910s) is within the limit (349056.0s)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,768 | INFO     | job 7004736515 has state=finished
[2026-02-07 17:22:24] 2026-02-07 16:21:21,768 | INFO     | preparing for final server update for job 7004736515 in state='finished'
[2026-02-07 17:22:24] 2026-02-07 16:21:21,768 | INFO     | reading metadata from: /tmp/job_11081675/atlas/pilot/slots/0/PanDA_Pilot-7004736515/jobReport.json
[2026-02-07 17:22:24] 2026-02-07 16:21:21,769 | INFO     | added worker_node to metadata from /tmp/job_11081675/atlas/pilot/slots/0/workernode_map.json
[2026-02-07 17:22:24] 2026-02-07 16:21:21,770 | INFO     | this job has now completed (state=finished)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,770 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,770 | INFO     | log transfer has been attempted: DONE
[2026-02-07 17:22:24] 2026-02-07 16:21:21,770 | INFO     | job 7004736515 has finished - writing final server update
[2026-02-07 17:22:24] 2026-02-07 16:21:21,770 | INFO     | total number of processed events: 400 (read)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,787 | INFO     | using path: /tmp/job_11081675/atlas/pilot/slots/0/PanDA_Pilot-7004736515/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,787 | INFO     | extracted standard info from prmon json
[2026-02-07 17:22:24] 2026-02-07 16:21:21,787 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 17:22:24] 2026-02-07 16:21:21,787 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 17:22:24] 2026-02-07 16:21:21,788 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 17:22:24] 2026-02-07 16:21:21,788 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 17:22:24] 2026-02-07 16:21:21,788 | INFO     | fitting pss+swap vs Time
[2026-02-07 17:22:24] 2026-02-07 16:21:21,788 | INFO     | sum of square deviations: 57407588.0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | sum of deviations: -855198589.0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | mean x: 1770479401.0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | mean y: 2783221.736842105
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | intersect: 26377545484.67611
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | chi2: 0.024984367934561227
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | current memory leak: -14.90 B/s (using 57 data points, chi2=0.02)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | could have reported an average CPU frequency of 2608 MHz (6 samples)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | ..............................
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . Timing measurements:
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . get job = 0 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . initial setup = 2 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . payload setup = 2 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . stage-in = 0 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . payload execution = 3888 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . stage-out = 0 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | . log creation = 0 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,789 | INFO     | ..............................
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | 
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | job summary report
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | --------------------------------------------------
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | PanDA job id: 7004736515
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | task id: 48431080
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | errors: (none)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | pilot state: finished 
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | transexitcode: 0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | exeerrorcode: 0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | exeerrordiag: 
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | exitcode: 0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | exitmsg: OK
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | cpuconsumptiontime: 28089 s
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | nevents: 400
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | neventsw: 0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | pid: 11758
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | pgrp: 11758
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | corecount: 8
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | event service: False
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | sizes: {0: 2282666, 1: 2283238, 11: 2283238, 3895: 2309249, 3896: 2318277, 3899: 2318333, 3900: 2318655}
[2026-02-07 17:22:24] 2026-02-07 16:21:21,837 | INFO     | --------------------------------------------------
[2026-02-07 17:22:24] 2026-02-07 16:21:21,838 | INFO     | 
[2026-02-07 17:22:24] 2026-02-07 16:21:21,838 | INFO     | executing command: ls -lF /tmp/job_11081675/atlas/pilot/slots/0
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,849 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 17:22:24] 2026-02-07 16:21:21,849 | INFO     | job 7004736515 has completed (purged errors)
[2026-02-07 17:22:24] 2026-02-07 16:21:21,849 | INFO     | overall cleanup function is called
[2026-02-07 17:22:24] 2026-02-07 16:21:22,855 | INFO     | --- collectZombieJob: --- 10, [11758]
[2026-02-07 17:22:24] 2026-02-07 16:21:22,855 | INFO     | zombie collector waiting for pid 11758
[2026-02-07 17:22:24] 2026-02-07 16:21:22,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 17:22:24] 2026-02-07 16:21:22,855 | INFO     | collected zombie processes
[2026-02-07 17:22:24] 2026-02-07 16:21:22,855 | INFO     | will attempt to kill all subprocesses of pid=11758
[2026-02-07 17:22:24] 2026-02-07 16:21:22,952 | INFO     | process IDs to be killed: [11758] (in reverse order)
[2026-02-07 17:22:24] 2026-02-07 16:21:22,986 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 17:22:24] 2026-02-07 16:21:22,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 17:22:24] 2026-02-07 16:21:22,989 | INFO     | did not find any defunct processes belonging to 11758
[2026-02-07 17:22:24] 2026-02-07 16:21:22,992 | INFO     | did not find any defunct processes belonging to 11758
[2026-02-07 17:22:24] 2026-02-07 16:21:22,992 | INFO     | ready for new job
[2026-02-07 17:22:24] 2026-02-07 16:21:22,992 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 17:22:24] 2026-02-07 16:21:22,993 | INFO     | **************************************
[2026-02-07 17:22:24] 2026-02-07 16:21:22,993 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 17:22:24] 2026-02-07 16:21:22,993 | INFO     | **************************************
[2026-02-07 17:22:24] 2026-02-07 16:21:22,993 | INFO     | 
[2026-02-07 17:22:24] 2026-02-07 16:21:23,007 | INFO     | architecture information:
[2026-02-07 17:22:24] 2026-02-07 16:21:23,007 | INFO     | executing command: cat /etc/os-release
[2026-02-07 17:22:24] 2026-02-07 16:21:23,014 | INFO     | cat /etc/os-release:
[2026-02-07 17:22:24] NAME="CentOS Linux"
[2026-02-07 17:22:24] VERSION="7 (Core)"
[2026-02-07 17:22:24] ID="centos"
[2026-02-07 17:22:24] ID_LIKE="rhel fedora"
[2026-02-07 17:22:24] VERSION_ID="7"
[2026-02-07 17:22:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 17:22:24] ANSI_COLOR="0;31"
[2026-02-07 17:22:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 17:22:24] HOME_URL="https://www.centos.org/"
[2026-02-07 17:22:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 17:22:24] 
[2026-02-07 17:22:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 17:22:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 17:22:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 17:22:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 17:22:24] 
[2026-02-07 17:22:24] 2026-02-07 16:21:23,014 | INFO     | **************************************
[2026-02-07 17:22:24] 2026-02-07 16:21:23,517 | INFO     | executing command: df -mP /tmp/job_11081675/atlas/pilot/slots/0
[2026-02-07 17:22:24] 2026-02-07 16:21:23,523 | INFO     | sufficient remaining disk space (223104466944 B)
[2026-02-07 17:22:24] 2026-02-07 16:21:23,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 17:22:24] 2026-02-07 16:21:23,523 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 17:22:24] 2026-02-07 16:21:23,523 | INFO     | update_server=False
[2026-02-07 17:22:24] 2026-02-07 16:21:23,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 17:22:24] 2026-02-07 16:21:23,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 17:22:24] 2026-02-07 16:21:23,528 | INFO     | all payload control threads have been joined
[2026-02-07 17:22:24] 2026-02-07 16:21:23,531 | INFO     | all job control threads have been joined
[2026-02-07 17:22:24] 2026-02-07 16:21:23,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 17:22:24] 2026-02-07 16:21:23,859 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 17:22:24] 2026-02-07 16:21:23,859 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 17:22:24] 2026-02-07 16:21:23,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 17:22:24] 2026-02-07 16:21:23,859 | INFO     | will abort loop
[2026-02-07 17:22:24] 2026-02-07 16:21:24,506 | INFO     | all data control threads have been joined
[2026-02-07 17:22:24] 2026-02-07 16:21:24,528 | INFO     | [job] retrieve thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:24,529 | INFO     | [job] queue monitor thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:24,533 | INFO     | [payload] control thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:24,536 | INFO     | [job] control thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:24,560 | INFO     | [data] copytool_in thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:24,579 | INFO     | [payload] failed_post thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:24,864 | INFO     | [job] job monitor thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,221 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,399 | INFO     | [job] validate thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,488 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,512 | INFO     | [data] control thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,541 | INFO     | [data] copytool_out thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,570 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,763 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:25,763 | INFO     | [payload] validate_post thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:26,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 17:22:24] 2026-02-07 16:21:30,701 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 17:22:24] 2026-02-07 16:21:54,634 | INFO     | PID=6908 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-07 17:22:24] 2026-02-07 16:21:54,634 | INFO     | .. there are 2 such processes running
[2026-02-07 17:22:24] 2026-02-07 16:21:54,634 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 17:22:24] 2026-02-07 16:21:54,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 17:22:24] 2026-02-07 16:21:54,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 17:22:24] 2026-02-07 16:22:17,251 | INFO     | [monitor] cgroup control has ended
[2026-02-07 17:22:24] 2026-02-07 16:22:19,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-02-07 17:22:24] 2026-02-07 16:22:19,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 17:22:24] 2026-02-07 16:22:19,757 | INFO     | [monitor] control thread has ended
[2026-02-07 17:22:24] 2026-02-07 16:22:24,031 | INFO     | all workflow threads have been joined
[2026-02-07 17:22:24] 2026-02-07 16:22:24,031 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 17:22:24] 2026-02-07 16:22:24,031 | INFO     | traces error code: 0
[2026-02-07 17:22:24] 2026-02-07 16:22:24,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 17:22:24] 2026-02-07 16:22:24,104 [wrapper] ==== pilot stdout END ====
[2026-02-07 17:22:24] 2026-02-07 16:22:24,105 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 17:22:24] 2026-02-07 16:22:24,106 [wrapper] pilotpid: 6908
[2026-02-07 17:22:24] 2026-02-07 16:22:24,108 [wrapper] Pilot exit status: 0
[2026-02-07 17:22:24] 2026-02-07 16:22:24,112 [wrapper] pandaids: 7004736515
[2026-02-07 17:22:24] 2026-02-07 16:22:24,134 [wrapper] cleanup supervisor_pilot 10104 6909
[2026-02-07 17:22:24] 2026-02-07 16:22:24,135 [wrapper] Test setup, not cleaning
[2026-02-07 17:22:24] 2026-02-07 16:22:24,136 [wrapper] apfmon messages muted
[2026-02-07 17:22:24] 2026-02-07 16:22:24,137 [wrapper] ==== wrapper stdout END ====
[2026-02-07 17:22:24] 2026-02-07 16:22:24,139 [wrapper] ==== wrapper stderr END ====
[2026-02-07 17:22:24]  *** Error codes and diagnostics ***
[2026-02-07 17:22:24]     "exeErrorCode": 0,
[2026-02-07 17:22:24]     "exeErrorDiag": "",
[2026-02-07 17:22:24]     "pilotErrorCode": 0,
[2026-02-07 17:22:24]     "pilotErrorDiag": "",
[2026-02-07 17:22:24]  *** Listing of results directory ***
[2026-02-07 17:22:24] total 898792
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user    584627 Feb  6 21:57 pilot3.tar.gz
[2026-02-07 17:22:24] -rwx------ 1 mf493845 unix-user     36322 Feb  6 21:59 runpilot2-wrapper.sh
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      5111 Feb  6 22:00 queuedata.json
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user       100 Feb  7 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 17:22:24] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  7 14:02 run_atlas
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user       105 Feb  7 14:02 job.xml
[2026-02-07 17:22:24] -rw-r--r-- 2 mf493845 unix-user 652592786 Feb  7 16:16 EVNT.48431078._000204.pool.root.1
[2026-02-07 17:22:24] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  7 16:16 start_atlas.sh
[2026-02-07 17:22:24] drwxrwx--x 2 mf493845 unix-user       100 Feb  7 16:16 shared
[2026-02-07 17:22:24] -rw-r--r-- 2 mf493845 unix-user    597968 Feb  7 16:16 input.tar.gz
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      6390 Feb  7 16:16 init_data.xml
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user         0 Feb  7 16:16 boinc_setup_complete
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      8192 Feb  7 16:16 boinc_mmap_file
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user         0 Feb  7 16:16 boinc_lockfile
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      2559 Feb  7 16:16 pandaJob.out
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user   1009502 Feb  7 16:16 agis_schedconf.cvmfs.json
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user   1513088 Feb  7 16:16 agis_ddmendpoints.agis.ALL.json
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user       420 Feb  7 16:16 workernode_map.json
[2026-02-07 17:22:24] drwx------ 5 mf493845 unix-user       440 Feb  7 16:16 pilot3
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user 262007587 Feb  7 17:20 HITS.48431080._013142.pool.root.1
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user        95 Feb  7 17:20 pilot_heartbeat.json
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      1021 Feb  7 17:21 memory_monitor_summary.json
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user    322189 Feb  7 17:21 log.48431080._013142.job.log.tgz.1
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      6317 Feb  7 17:21 heartbeat.json
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      5016 Feb  7 17:22 pilotlog.txt
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user    602218 Feb  7 17:22 log.48431080._013142.job.log.1
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user       357 Feb  7 17:22 output.list
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user       620 Feb  7 17:22 runtime_log
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user    942080 Feb  7 17:22 result.tar.gz
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user      9219 Feb  7 17:22 runtime_log.err
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user       643 Feb  7 17:22 jUzLDm75h88n9Rq4apOajLDm4fhM0noT9bVooX4SDmlRZKDmLWs9Um.diag
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user     21993 Feb  7 17:22 stderr.txt
[2026-02-07 17:22:24] HITS file was successfully produced:
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user 262007587 Feb  7 17:20 shared/HITS.pool.root.1
[2026-02-07 17:22:24]  *** Contents of shared directory: ***
[2026-02-07 17:22:24] total 894688
[2026-02-07 17:22:24] -rw-r--r-- 2 mf493845 unix-user 652592786 Feb  7 16:16 ATLAS.root_0
[2026-02-07 17:22:24] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  7 16:16 start_atlas.sh
[2026-02-07 17:22:24] -rw-r--r-- 2 mf493845 unix-user    597968 Feb  7 16:16 input.tar.gz
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user 262007587 Feb  7 17:20 HITS.pool.root.1
[2026-02-07 17:22:24] -rw------- 1 mf493845 unix-user    942080 Feb  7 17:22 result.tar.gz
17:22:25 (2878): run_atlas exited; CPU time 28139.650672
17:22:25 (2878): called boinc_finish(0)

</stderr_txt>
]]>

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