Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:21:21 (17557): wrapper (7.7.26015): starting
04:21:21 (17557): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 04:21:21] Arguments: --nthreads 12
[2026-02-07 04:21:21] Threads: 12
[2026-02-07 04:21:21] Checking for CVMFS
[2026-02-07 04:21:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 04:21:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 04:21:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 04:21:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 04:21:21] 2.11.2.0 3035 392569 100468 155978 3 49 17621391 20275200 1 130560 3 167868597 99.948 24069002 17189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-07 04:21:21] CVMFS is ok
[2026-02-07 04:21:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 04:21:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 04:21:21] Further information can be found at the LHC@home message board.
[2026-02-07 04:21:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 04:21:21] Checking for apptainer binary...
[2026-02-07 04:21:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 04:21:21] Running /usr/bin/apptainer --version
[2026-02-07 04:21:21] apptainer version 1.3.2-1.el7
[2026-02-07 04:21:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 04:21:22] c-205-31.aglt2.org
[2026-02-07 04:21:22] apptainer works
[2026-02-07 04:21:22] Set ATHENA_PROC_NUMBER=12
[2026-02-07 04:21:22] Set ATHENA_CORE_NUMBER=12
[2026-02-07 04:21:22] Starting ATLAS job with PandaID=6998624302
[2026-02-07 04:21:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 06:02:13]  *** The last 200 lines of the pilot log: ***
[2026-02-07 06:02:13]  guid=fd893ca5-0771-4e2a-a638-964240e0f0dd
[2026-02-07 06:02:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-07 06:02:13]  is_altstaged=None
[2026-02-07 06:02:13]  is_tar=False
[2026-02-07 06:02:13]  lfn=log.48431113._003920.job.log.tgz.1
[2026-02-07 06:02:13]  mtime=0
[2026-02-07 06:02:13]  protocol_id=None
[2026-02-07 06:02:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 06:02:13]  replicas=None
[2026-02-07 06:02:13]  scope=mc23_13p6TeV
[2026-02-07 06:02:13]  status=None
[2026-02-07 06:02:13]  status_code=0
[2026-02-07 06:02:13]  storage_token=
[2026-02-07 06:02:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6998624302/log.48431113._003920.job.log.tgz.1
[2026-02-07 06:02:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/d1/log.48431113._003920.job.log.tgz.1
[2026-02-07 06:02:13]  workdir=None
[2026-02-07 06:02:13] ]
[2026-02-07 06:02:13] 2026-02-07 11:01:38,739 | INFO     | transferring file log.48431113._003920.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6998624302/log.48431113._003920.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-07 06:02:13] 2026-02-07 11:01:38,739 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6998624302/log.48431113._003920.job.log.tgz.1 /tmp/boinchome/slots/0/log.48431113._003920.job
[2026-02-07 06:02:13] 2026-02-07 11:01:38,762 | INFO     | adding to output.list: log.48431113._003920.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/d1/log.48431113._003920.job.log.tg
[2026-02-07 06:02:13] 2026-02-07 11:01:38,763 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 06:02:13] 2026-02-07 11:01:38,763 | INFO     | summary of transferred files:
[2026-02-07 06:02:13] 2026-02-07 11:01:38,764 | INFO     |  -- lfn=log.48431113._003920.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 06:02:13] 2026-02-07 11:01:38,764 | INFO     | stage-out finished correctly
[2026-02-07 06:02:13] 2026-02-07 11:01:39,219 | INFO     | monitor loop #455: job 0:6998624302 is in state 'finished'
[2026-02-07 06:02:13] 2026-02-07 11:01:39,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 06:02:13] 2026-02-07 11:01:39,544 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 06:02:13] 2026-02-07 11:01:39,897 | INFO     | time since job start (5996s) is within the limit (349056.0s)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,727 | INFO     | job 6998624302 has state=finished
[2026-02-07 06:02:13] 2026-02-07 11:01:41,727 | INFO     | preparing for final server update for job 6998624302 in state='finished'
[2026-02-07 06:02:13] 2026-02-07 11:01:41,728 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6998624302/jobReport.json
[2026-02-07 06:02:13] 2026-02-07 11:01:41,728 | INFO     | monitor loop #456: job 0:6998624302 is in state 'finished'
[2026-02-07 06:02:13] 2026-02-07 11:01:41,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,731 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-07 06:02:13] 2026-02-07 11:01:41,732 | INFO     | this job has now completed (state=finished)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,732 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,732 | INFO     | log transfer has been attempted: DONE
[2026-02-07 06:02:13] 2026-02-07 11:01:41,732 | INFO     | job 6998624302 has finished - writing final server update
[2026-02-07 06:02:13] 2026-02-07 11:01:41,733 | INFO     | total number of processed events: 400 (read)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,735 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6998624302/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,735 | INFO     | extracted standard info from prmon json
[2026-02-07 06:02:13] 2026-02-07 11:01:41,735 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 06:02:13] 2026-02-07 11:01:41,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 06:02:13] 2026-02-07 11:01:41,736 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 06:02:13] 2026-02-07 11:01:41,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 06:02:13] 2026-02-07 11:01:41,738 | INFO     | fitting pss+swap vs Time
[2026-02-07 06:02:13] 2026-02-07 11:01:41,738 | INFO     | sum of square deviations: 233641590.0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,738 | INFO     | sum of deviations: -15048501139.999998
[2026-02-07 06:02:13] 2026-02-07 11:01:41,738 | INFO     | mean x: 1770459177.0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,739 | INFO     | mean y: 2903440.868131868
[2026-02-07 06:02:13] 2026-02-07 11:01:41,739 | INFO     | intersect: 114035499022.02283
[2026-02-07 06:02:13] 2026-02-07 11:01:41,739 | INFO     | chi2: 0.07759490541211207
[2026-02-07 06:02:13] 2026-02-07 11:01:41,739 | INFO     | current memory leak: -64.41 B/s (using 91 data points, chi2=0.08)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,739 | INFO     | could have reported an average CPU frequency of 1706 MHz (7 samples)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,739 | INFO     | ..............................
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . Timing measurements:
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . get job = 0 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . initial setup = 7 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . payload setup = 7 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . stage-in = 0 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . payload execution = 5971 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . stage-out = 0 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | . log creation = 0 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,740 | INFO     | ..............................
[2026-02-07 06:02:13] 2026-02-07 11:01:41,817 | INFO     | 
[2026-02-07 06:02:13] 2026-02-07 11:01:41,817 | INFO     | job summary report
[2026-02-07 06:02:13] 2026-02-07 11:01:41,817 | INFO     | --------------------------------------------------
[2026-02-07 06:02:13] 2026-02-07 11:01:41,818 | INFO     | PanDA job id: 6998624302
[2026-02-07 06:02:13] 2026-02-07 11:01:41,818 | INFO     | task id: 48431113
[2026-02-07 06:02:13] 2026-02-07 11:01:41,818 | INFO     | errors: (none)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,818 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 06:02:13] 2026-02-07 11:01:41,818 | INFO     | pilot state: finished 
[2026-02-07 06:02:13] 2026-02-07 11:01:41,818 | INFO     | transexitcode: 0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | exeerrorcode: 0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | exeerrordiag: 
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | exitcode: 0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | exitmsg: OK
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | cpuconsumptiontime: 65619 s
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | nevents: 400
[2026-02-07 06:02:13] 2026-02-07 11:01:41,819 | INFO     | neventsw: 0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,820 | INFO     | pid: 25678
[2026-02-07 06:02:13] 2026-02-07 11:01:41,820 | INFO     | pgrp: 25678
[2026-02-07 06:02:13] 2026-02-07 11:01:41,820 | INFO     | corecount: 12
[2026-02-07 06:02:13] 2026-02-07 11:01:41,820 | INFO     | event service: False
[2026-02-07 06:02:13] 2026-02-07 11:01:41,820 | INFO     | sizes: {0: 2282685, 1: 2283146, 11: 2283146, 5981: 2309900, 5982: 2309899, 5984: 2318953, 5985: 2319137, 5987: 2319331}
[2026-02-07 06:02:13] 2026-02-07 11:01:41,820 | INFO     | --------------------------------------------------
[2026-02-07 06:02:13] 2026-02-07 11:01:41,821 | INFO     | 
[2026-02-07 06:02:13] 2026-02-07 11:01:41,821 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-07 06:02:13] 2026-02-07 11:01:41,845 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,846 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,846 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,846 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,846 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,846 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,848 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,849 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 06:02:13] 2026-02-07 11:01:41,849 | INFO     | job 6998624302 has completed (purged errors)
[2026-02-07 06:02:13] 2026-02-07 11:01:41,849 | INFO     | overall cleanup function is called
[2026-02-07 06:02:13] 2026-02-07 11:01:42,858 | INFO     | --- collectZombieJob: --- 10, [25678]
[2026-02-07 06:02:13] 2026-02-07 11:01:42,858 | INFO     | zombie collector waiting for pid 25678
[2026-02-07 06:02:13] 2026-02-07 11:01:42,858 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 06:02:13] 2026-02-07 11:01:42,858 | INFO     | collected zombie processes
[2026-02-07 06:02:13] 2026-02-07 11:01:42,858 | INFO     | will attempt to kill all subprocesses of pid=25678
[2026-02-07 06:02:13] 2026-02-07 11:01:42,950 | INFO     | process IDs to be killed: [25678] (in reverse order)
[2026-02-07 06:02:13] 2026-02-07 11:01:43,003 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 06:02:13] 2026-02-07 11:01:43,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 06:02:13] 2026-02-07 11:01:43,007 | INFO     | did not find any defunct processes belonging to 25678
[2026-02-07 06:02:13] 2026-02-07 11:01:43,009 | INFO     | did not find any defunct processes belonging to 25678
[2026-02-07 06:02:13] 2026-02-07 11:01:43,009 | INFO     | ready for new job
[2026-02-07 06:02:13] 2026-02-07 11:01:43,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 06:02:13] 2026-02-07 11:01:43,010 | INFO     | **************************************
[2026-02-07 06:02:13] 2026-02-07 11:01:43,010 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 06:02:13] 2026-02-07 11:01:43,011 | INFO     | **************************************
[2026-02-07 06:02:13] 2026-02-07 11:01:43,011 | INFO     | 
[2026-02-07 06:02:13] 2026-02-07 11:01:43,011 | INFO     | architecture information:
[2026-02-07 06:02:13] 2026-02-07 11:01:43,012 | INFO     | executing command: cat /etc/os-release
[2026-02-07 06:02:13] 2026-02-07 11:01:43,028 | INFO     | cat /etc/os-release:
[2026-02-07 06:02:13] NAME="CentOS Linux"
[2026-02-07 06:02:13] VERSION="7 (Core)"
[2026-02-07 06:02:13] ID="centos"
[2026-02-07 06:02:13] ID_LIKE="rhel fedora"
[2026-02-07 06:02:13] VERSION_ID="7"
[2026-02-07 06:02:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 06:02:13] ANSI_COLOR="0;31"
[2026-02-07 06:02:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 06:02:13] HOME_URL="https://www.centos.org/"
[2026-02-07 06:02:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 06:02:13] 
[2026-02-07 06:02:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 06:02:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 06:02:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 06:02:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 06:02:13] 
[2026-02-07 06:02:13] 2026-02-07 11:01:43,028 | INFO     | **************************************
[2026-02-07 06:02:13] 2026-02-07 11:01:43,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-07 06:02:13] 2026-02-07 11:01:43,558 | INFO     | sufficient remaining disk space (28402778112 B)
[2026-02-07 06:02:13] 2026-02-07 11:01:43,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 06:02:13] 2026-02-07 11:01:43,559 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 06:02:13] 2026-02-07 11:01:43,559 | INFO     | update_server=False
[2026-02-07 06:02:13] 2026-02-07 11:01:43,559 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 06:02:13] 2026-02-07 11:01:43,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 06:02:13] 2026-02-07 11:01:43,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 06:02:13] 2026-02-07 11:01:43,560 | INFO     | aborting loop
[2026-02-07 06:02:13] 2026-02-07 11:01:43,726 | INFO     | all data control threads have been joined
[2026-02-07 06:02:13] 2026-02-07 11:01:44,120 | INFO     | all job control threads have been joined
[2026-02-07 06:02:13] 2026-02-07 11:01:44,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 06:02:13] 2026-02-07 11:01:44,411 | INFO     | all payload control threads have been joined
[2026-02-07 06:02:13] 2026-02-07 11:01:44,564 | INFO     | [job] retrieve thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:44,565 | INFO     | [job] queue monitor thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:44,566 | INFO     | [job] job monitor thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:44,731 | INFO     | [data] control thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:44,891 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:45,126 | INFO     | [job] control thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:45,191 | INFO     | [data] copytool_in thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:45,417 | INFO     | [payload] control thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:45,443 | INFO     | [payload] failed_post thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:45,547 | INFO     | [job] validate thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:45,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 06:02:13] 2026-02-07 11:01:45,758 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:46,024 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:46,055 | INFO     | [payload] validate_post thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:46,357 | INFO     | [data] copytool_out thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:49,635 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:52,307 | INFO     | [monitor] cgroup control has ended
[2026-02-07 06:02:13] 2026-02-07 11:01:53,684 | INFO     | job.realtimelogging is not enabled
[2026-02-07 06:02:13] 2026-02-07 11:01:54,687 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 06:02:13] 2026-02-07 11:01:56,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667808679744)>', '<ExcThread(monitor, started 140667107907328)>']
[2026-02-07 06:02:13] 2026-02-07 11:02:01,286 | INFO     | all workflow threads have been joined
[2026-02-07 06:02:13] 2026-02-07 11:02:01,286 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 06:02:13] 2026-02-07 11:02:01,293 | INFO     | traces error code: 0
[2026-02-07 06:02:13] 2026-02-07 11:02:01,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 06:02:13] 2026-02-07 11:02:13,093 | INFO     | PID=21248 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 06:02:13] 2026-02-07 11:02:13,094 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 06:02:13] 2026-02-07 11:02:13,094 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 06:02:13] 2026-02-07 11:02:13,094 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 06:02:13] 2026-02-07 11:02:13,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 06:02:13] 2026-02-07 11:02:13,094 | CRITICAL | thread 'MainThread' is not alive
[2026-02-07 06:02:13] 2026-02-07 11:02:13,094 | INFO     | [monitor] control thread has ended
[2026-02-07 06:02:13] 2026-02-07 11:02:13,194 [wrapper] ==== pilot stdout END ====
[2026-02-07 06:02:13] 2026-02-07 11:02:13,198 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 06:02:13] 2026-02-07 11:02:13,202 [wrapper] pilotpid: 21248
[2026-02-07 06:02:13] 2026-02-07 11:02:13,206 [wrapper] Pilot exit status: 0
[2026-02-07 06:02:13] 2026-02-07 11:02:13,222 [wrapper] pandaids: 6998624302
[2026-02-07 06:02:13] 2026-02-07 11:02:13,265 [wrapper] cleanup supervisor_pilot 18986 21249
[2026-02-07 06:02:13] 2026-02-07 11:02:13,269 [wrapper] Test setup, not cleaning
[2026-02-07 06:02:13] 2026-02-07 11:02:13,273 [wrapper] apfmon messages muted
[2026-02-07 06:02:13] 2026-02-07 11:02:13,277 [wrapper] ==== wrapper stdout END ====
[2026-02-07 06:02:13] 2026-02-07 11:02:13,281 [wrapper] ==== wrapper stderr END ====
[2026-02-07 06:02:13]  *** Error codes and diagnostics ***
[2026-02-07 06:02:13]     "exeErrorCode": 0,
[2026-02-07 06:02:13]     "exeErrorDiag": "",
[2026-02-07 06:02:13]     "pilotErrorCode": 0,
[2026-02-07 06:02:13]     "pilotErrorDiag": "",
[2026-02-07 06:02:13]  *** Listing of results directory ***
[2026-02-07 06:02:13] total 901164
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas    584627 Feb  6 22:47 pilot3.tar.gz
[2026-02-07 06:02:13] -rwx------ 1 boincer umatlas     36322 Feb  6 22:47 runpilot2-wrapper.sh
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas      5111 Feb  6 22:48 queuedata.json
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas       100 Feb  7 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 06:02:13] -rwxr-xr-x 1 boincer umatlas      7986 Feb  7 04:21 run_atlas
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas       105 Feb  7 04:21 job.xml
[2026-02-07 06:02:13] -rw-r--r-- 2 boincer umatlas 654727889 Feb  7 04:21 EVNT.48431111._000078.pool.root.1
[2026-02-07 06:02:13] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 04:21 start_atlas.sh
[2026-02-07 06:02:13] drwxrwx--x 2 boincer umatlas      4096 Feb  7 04:21 shared
[2026-02-07 06:02:13] -rw-r--r-- 2 boincer umatlas    597963 Feb  7 04:21 input.tar.gz
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas         0 Feb  7 04:21 boinc_lockfile
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas      2545 Feb  7 04:21 pandaJob.out
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas        57 Feb  7 04:21 setup.sh.local
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas   1009504 Feb  7 04:21 agis_schedconf.cvmfs.json
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas   1513088 Feb  7 04:21 agis_ddmendpoints.agis.ALL.json
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas       445 Feb  7 04:21 workernode_map.json
[2026-02-07 06:02:13] drwx------ 5 boincer umatlas      4096 Feb  7 04:21 pilot3
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas      5953 Feb  7 05:58 init_data.xml
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas 261578673 Feb  7 06:01 HITS.48431113._003920.pool.root.1
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas       530 Feb  7 06:01 boinc_task_state.xml
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas      1045 Feb  7 06:01 memory_monitor_summary.json
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas    414363 Feb  7 06:01 log.48431113._003920.job.log.tgz.1
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas      8192 Feb  7 06:01 boinc_mmap_file
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas        27 Feb  7 06:01 wrapper_checkpoint.txt
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas      6420 Feb  7 06:01 heartbeat.json
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas       815 Feb  7 06:02 pilotlog.txt
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas        95 Feb  7 06:02 pilot_heartbeat.json
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas    856690 Feb  7 06:02 log.48431113._003920.job.log.1
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas       357 Feb  7 06:02 output.list
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas       620 Feb  7 06:02 runtime_log
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas   1290240 Feb  7 06:02 result.tar.gz
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas      9343 Feb  7 06:02 runtime_log.err
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas       659 Feb  7 06:02 HWLNDm9So88n9Rq4apOajLDm4fhM0noT9bVooX4SDmv5ZKDmC80fXo.diag
[2026-02-07 06:02:13] -rw-r--r-- 1 boincer umatlas     21370 Feb  7 06:02 stderr.txt
[2026-02-07 06:02:13] HITS file was successfully produced:
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas 261578673 Feb  7 06:01 shared/HITS.pool.root.1
[2026-02-07 06:02:13]  *** Contents of shared directory: ***
[2026-02-07 06:02:13] total 896700
[2026-02-07 06:02:13] -rw-r--r-- 2 boincer umatlas 654727889 Feb  7 04:21 ATLAS.root_0
[2026-02-07 06:02:13] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 04:21 start_atlas.sh
[2026-02-07 06:02:13] -rw-r--r-- 2 boincer umatlas    597963 Feb  7 04:21 input.tar.gz
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas 261578673 Feb  7 06:01 HITS.pool.root.1
[2026-02-07 06:02:13] -rw------- 1 boincer umatlas   1290240 Feb  7 06:02 result.tar.gz
06:02:14 (17557): run_atlas exited; CPU time 65607.200948
06:02:14 (17557): called boinc_finish(0)

</stderr_txt>
]]>

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