Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:09:02 (2254404): wrapper (7.7.26015): starting
15:09:02 (2254404): wrapper: running run_atlas (--nthreads 2)
[2026-02-07 15:09:02] Arguments: --nthreads 2
[2026-02-07 15:09:02] Threads: 2
[2026-02-07 15:09:02] Checking for CVMFS
[2026-02-07 15:09:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 15:09:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 15:09:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 15:09:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 15:09:04] 2.9.2.0 2050517 1986 57144 155985 2 50 33405244 36864001 0 130560 0 610771 99.977 77938 21109 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 15:09:04] CVMFS is ok
[2026-02-07 15:09:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 15:09:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 15:09:04] Further information can be found at the LHC@home message board.
[2026-02-07 15:09:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 15:09:04] Checking for apptainer binary...
[2026-02-07 15:09:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 15:09:04] Running /usr/bin/apptainer --version
[2026-02-07 15:09:04] apptainer version 1.4.1-1.1
[2026-02-07 15:09:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 15:09:04] atlasA229
[2026-02-07 15:09:04] apptainer works
[2026-02-07 15:09:04] Set ATHENA_PROC_NUMBER=2
[2026-02-07 15:09:04] Set ATHENA_CORE_NUMBER=2
[2026-02-07 15:09:04] Starting ATLAS job with PandaID=7004731195
[2026-02-07 15:09:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 18:08:54]  *** The last 200 lines of the pilot log: ***
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | job 7004731195 has completed (purged errors)
[2026-02-07 18:08:54] 2026-02-07 17:08:21,335 | INFO     | overall cleanup function is called
[2026-02-07 18:08:54] 2026-02-07 17:08:21,882 | INFO     | PID=2258430 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 18:08:54] 2026-02-07 17:08:22,341 | INFO     | --- collectZombieJob: --- 10, [2262837]
[2026-02-07 18:08:54] 2026-02-07 17:08:22,341 | INFO     | zombie collector waiting for pid 2262837
[2026-02-07 18:08:54] 2026-02-07 17:08:22,341 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 18:08:54] 2026-02-07 17:08:22,341 | INFO     | collected zombie processes
[2026-02-07 18:08:54] 2026-02-07 17:08:22,341 | INFO     | will attempt to kill all subprocesses of pid=2262837
[2026-02-07 18:08:54] 2026-02-07 17:08:22,372 | INFO     | process IDs to be killed: [2262837] (in reverse order)
[2026-02-07 18:08:54] 2026-02-07 17:08:22,393 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 18:08:54] 2026-02-07 17:08:22,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 18:08:54] 2026-02-07 17:08:22,394 | INFO     | did not find any defunct processes belonging to 2262837
[2026-02-07 18:08:54] 2026-02-07 17:08:22,394 | INFO     | did not find any defunct processes belonging to 2262837
[2026-02-07 18:08:54] 2026-02-07 17:08:22,394 | INFO     | ready for new job
[2026-02-07 18:08:54] 2026-02-07 17:08:22,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 18:08:54] 2026-02-07 17:08:22,395 | INFO     | **************************************
[2026-02-07 18:08:54] 2026-02-07 17:08:22,395 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 18:08:54] 2026-02-07 17:08:22,395 | INFO     | **************************************
[2026-02-07 18:08:54] 2026-02-07 17:08:22,395 | INFO     | 
[2026-02-07 18:08:54] 2026-02-07 17:08:22,395 | INFO     | architecture information:
[2026-02-07 18:08:54] 2026-02-07 17:08:22,395 | INFO     | executing command: cat /etc/os-release
[2026-02-07 18:08:54] 2026-02-07 17:08:22,403 | INFO     | cat /etc/os-release:
[2026-02-07 18:08:54] NAME="CentOS Linux"
[2026-02-07 18:08:54] VERSION="7 (Core)"
[2026-02-07 18:08:54] ID="centos"
[2026-02-07 18:08:54] ID_LIKE="rhel fedora"
[2026-02-07 18:08:54] VERSION_ID="7"
[2026-02-07 18:08:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 18:08:54] ANSI_COLOR="0;31"
[2026-02-07 18:08:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 18:08:54] HOME_URL="https://www.centos.org/"
[2026-02-07 18:08:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 18:08:54] 
[2026-02-07 18:08:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 18:08:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 18:08:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 18:08:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 18:08:54] 
[2026-02-07 18:08:54] 2026-02-07 17:08:22,404 | INFO     | **************************************
[2026-02-07 18:08:54] 2026-02-07 17:08:22,907 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 18:08:54] 2026-02-07 17:08:22,918 | INFO     | sufficient remaining disk space (324531126272 B)
[2026-02-07 18:08:54] 2026-02-07 17:08:22,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 18:08:54] 2026-02-07 17:08:22,919 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 18:08:54] 2026-02-07 17:08:22,919 | INFO     | update_server=False
[2026-02-07 18:08:54] 2026-02-07 17:08:22,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 18:08:54] 2026-02-07 17:08:22,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 18:08:54] 2026-02-07 17:08:22,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 18:08:54] 2026-02-07 17:08:22,919 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 18:08:54] 2026-02-07 17:08:22,929 | INFO     | all payload control threads have been joined
[2026-02-07 18:08:54] 2026-02-07 17:08:23,029 | INFO     | all data control threads have been joined
[2026-02-07 18:08:54] 2026-02-07 17:08:23,435 | INFO     | all job control threads have been joined
[2026-02-07 18:08:54] 2026-02-07 17:08:23,924 | INFO     | [job] retrieve thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:23,925 | INFO     | [job] queue monitor thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:23,935 | INFO     | [payload] control thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:23,981 | INFO     | [data] copytool_in thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:24,036 | INFO     | [data] control thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:24,086 | WARNING  | process 2262837 can no longer be monitored (due to stat problems) - aborting
[2026-02-07 18:08:54] 2026-02-07 17:08:24,109 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 18:08:54] 2026-02-07 17:08:24,136 | INFO     | number of running child processes to parent process 2262837: 1
[2026-02-07 18:08:54] 2026-02-07 17:08:24,136 | INFO     | maximum number of monitored processes: 6
[2026-02-07 18:08:54] 2026-02-07 17:08:24,136 | INFO     | aborting job monitoring since job object (job id=7004731195) has expired
[2026-02-07 18:08:54] 2026-02-07 17:08:24,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 18:08:54] 2026-02-07 17:08:24,136 | INFO     | will abort loop
[2026-02-07 18:08:54] 2026-02-07 17:08:24,307 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:24,441 | INFO     | [job] control thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:24,730 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:24,733 | INFO     | [payload] validate_post thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:24,925 | INFO     | [data] copytool_out thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:25,142 | INFO     | [job] job monitor thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:25,181 | INFO     | [job] validate thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:25,221 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:25,389 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:25,453 | INFO     | [payload] failed_post thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:26,926 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 18:08:54] 2026-02-07 17:08:39,227 | INFO     | [monitor] cgroup control has ended
[2026-02-07 18:08:54] 2026-02-07 17:08:39,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039647332160)>', '<ExcThread(monitor, started 140038968940288)>']
[2026-02-07 18:08:54] 2026-02-07 17:08:44,365 | INFO     | all workflow threads have been joined
[2026-02-07 18:08:54] 2026-02-07 17:08:44,365 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 18:08:54] 2026-02-07 17:08:44,366 | INFO     | traces error code: 0
[2026-02-07 18:08:54] 2026-02-07 17:08:44,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 18:08:54] 2026-02-07 17:08:53,983 | INFO     | PID=2258430 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 18:08:54] 2026-02-07 17:08:53,983 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 18:08:54] 2026-02-07 17:08:53,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 18:08:54] 2026-02-07 17:08:53,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 18:08:54] 2026-02-07 17:08:53,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 18:08:54] 2026-02-07 17:08:53,984 | INFO     | [monitor] control thread has ended
[2026-02-07 18:08:54] 2026-02-07 17:08:54,024 [wrapper] ==== pilot stdout END ====
[2026-02-07 18:08:54] 2026-02-07 17:08:54,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 18:08:54] 2026-02-07 17:08:54,030 [wrapper] pilotpid: 2258430
[2026-02-07 18:08:54] 2026-02-07 17:08:54,032 [wrapper] Pilot exit status: 0
[2026-02-07 18:08:54] 2026-02-07 17:08:54,039 [wrapper] pandaids: 7004731195
[2026-02-07 18:08:54] 2026-02-07 17:08:54,053 [wrapper] cleanup supervisor_pilot 2267886 2258431
[2026-02-07 18:08:54] 2026-02-07 17:08:54,056 [wrapper] Test setup, not cleaning
[2026-02-07 18:08:54] 2026-02-07 17:08:54,058 [wrapper] apfmon messages muted
[2026-02-07 18:08:54] 2026-02-07 17:08:54,061 [wrapper] ==== wrapper stdout END ====
[2026-02-07 18:08:54] 2026-02-07 17:08:54,063 [wrapper] ==== wrapper stderr END ====
[2026-02-07 18:08:54]  *** Error codes and diagnostics ***
[2026-02-07 18:08:54]     "exeErrorCode": 0,
[2026-02-07 18:08:54]     "exeErrorDiag": "",
[2026-02-07 18:08:54]     "pilotErrorCode": 0,
[2026-02-07 18:08:54]     "pilotErrorDiag": "",
[2026-02-07 18:08:54]  *** Listing of results directory ***
[2026-02-07 18:08:54] total 949980
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc    584627 Feb  6 23:50 pilot3.tar.gz
[2026-02-07 18:08:54] -rwx------ 1 boinc boinc     36322 Feb  6 23:54 runpilot2-wrapper.sh
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc      5111 Feb  6 23:56 queuedata.json
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc       100 Feb  7 15:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 18:08:54] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 15:09 run_atlas
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc       105 Feb  7 15:09 job.xml
[2026-02-07 18:08:54] -rw-r--r-- 2 boinc boinc 683517959 Feb  7 15:09 EVNT.48431094._000291.pool.root.1
[2026-02-07 18:08:54] -rw-r--r-- 2 boinc boinc    597964 Feb  7 15:09 input.tar.gz
[2026-02-07 18:08:54] -rw-r--r-- 2 boinc boinc     15845 Feb  7 15:09 start_atlas.sh
[2026-02-07 18:08:54] drwxrwx--x 2 boinc boinc      4096 Feb  7 15:09 shared
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc         0 Feb  7 15:09 boinc_setup_complete
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc      6206 Feb  7 15:09 init_data.xml
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc         0 Feb  7 15:09 boinc_lockfile
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc      2553 Feb  7 15:09 pandaJob.out
[2026-02-07 18:08:54] -rw------- 1 boinc boinc   1009510 Feb  7 15:09 agis_schedconf.cvmfs.json
[2026-02-07 18:08:54] -rw------- 1 boinc boinc   1513088 Feb  7 15:09 agis_ddmendpoints.agis.ALL.json
[2026-02-07 18:08:54] -rw------- 1 boinc boinc       422 Feb  7 15:09 workernode_map.json
[2026-02-07 18:08:54] drwx------ 5 boinc boinc      4096 Feb  7 15:09 pilot3
[2026-02-07 18:08:54] -rw------- 1 boinc boinc 281627909 Feb  7 18:07 HITS.48431096._007116.pool.root.1
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc       531 Feb  7 18:08 boinc_task_state.xml
[2026-02-07 18:08:54] -rw------- 1 boinc boinc        95 Feb  7 18:08 pilot_heartbeat.json
[2026-02-07 18:08:54] -rw------- 1 boinc boinc      1016 Feb  7 18:08 memory_monitor_summary.json
[2026-02-07 18:08:54] -rw------- 1 boinc boinc    328930 Feb  7 18:08 log.48431096._007116.job.log.tgz.1
[2026-02-07 18:08:54] -rw------- 1 boinc boinc      6306 Feb  7 18:08 heartbeat.json
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc      8192 Feb  7 18:08 boinc_mmap_file
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc        28 Feb  7 18:08 wrapper_checkpoint.txt
[2026-02-07 18:08:54] -rw------- 1 boinc boinc       747 Feb  7 18:08 pilotlog.txt
[2026-02-07 18:08:54] -rw------- 1 boinc boinc   1523055 Feb  7 18:08 log.48431096._007116.job.log.1
[2026-02-07 18:08:54] -rw------- 1 boinc boinc       357 Feb  7 18:08 output.list
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc       620 Feb  7 18:08 runtime_log
[2026-02-07 18:08:54] -rw------- 1 boinc boinc   1873920 Feb  7 18:08 result.tar.gz
[2026-02-07 18:08:54] -rw------- 1 boinc boinc       662 Feb  7 18:08 vL1NDmItj88n9Rq4apOajLDm4fhM0noT9bVooX4SDmhjZKDmCZbeen.diag
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc      8912 Feb  7 18:08 runtime_log.err
[2026-02-07 18:08:54] -rw-r--r-- 1 boinc boinc     12171 Feb  7 18:08 stderr.txt
[2026-02-07 18:08:54] HITS file was successfully produced:
[2026-02-07 18:08:54] -rw------- 1 boinc boinc 281627909 Feb  7 18:07 shared/HITS.pool.root.1
[2026-02-07 18:08:54]  *** Contents of shared directory: ***
[2026-02-07 18:08:54] total 944968
[2026-02-07 18:08:54] -rw-r--r-- 2 boinc boinc 683517959 Feb  7 15:09 ATLAS.root_0
[2026-02-07 18:08:54] -rw-r--r-- 2 boinc boinc    597964 Feb  7 15:09 input.tar.gz
[2026-02-07 18:08:54] -rw-r--r-- 2 boinc boinc     15845 Feb  7 15:09 start_atlas.sh
[2026-02-07 18:08:54] -rw------- 1 boinc boinc 281627909 Feb  7 18:07 HITS.pool.root.1
[2026-02-07 18:08:54] -rw------- 1 boinc boinc   1873920 Feb  7 18:08 result.tar.gz
18:08:55 (2254404): run_atlas exited; CPU time 21065.320376
18:08:55 (2254404): called boinc_finish(0)

</stderr_txt>
]]>

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