Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:06:44 (5480): wrapper (7.7.26015): starting
02:06:44 (5480): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 02:06:44] Arguments: --nthreads 12
[2026-02-07 02:06:44] Threads: 12
[2026-02-07 02:06:44] Checking for CVMFS
[2026-02-07 02:06:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 02:06:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 02:06:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 02:06:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 02:06:45] 2.11.2.0 28623 385104 97872 155974 0 50 18317145 20275201 1 130560 4 167039499 99.948 22532250 16835 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-07 02:06:45] CVMFS is ok
[2026-02-07 02:06:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 02:06:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 02:06:45] Further information can be found at the LHC@home message board.
[2026-02-07 02:06:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 02:06:45] Checking for apptainer binary...
[2026-02-07 02:06:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 02:06:45] Running /usr/bin/apptainer --version
[2026-02-07 02:06:45] apptainer version 1.3.2-1.el7
[2026-02-07 02:06:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 02:06:46] c-205-20.aglt2.org
[2026-02-07 02:06:46] apptainer works
[2026-02-07 02:06:46] Set ATHENA_PROC_NUMBER=12
[2026-02-07 02:06:46] Set ATHENA_CORE_NUMBER=12
[2026-02-07 02:06:46] Starting ATLAS job with PandaID=6998620706
[2026-02-07 02:06:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 03:25:43]  *** The last 200 lines of the pilot log: ***
[2026-02-07 03:25:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-07 03:25:43]  is_altstaged=None
[2026-02-07 03:25:43]  is_tar=False
[2026-02-07 03:25:43]  lfn=log.48318026._005157.job.log.tgz.1
[2026-02-07 03:25:43]  mtime=0
[2026-02-07 03:25:43]  protocol_id=None
[2026-02-07 03:25:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 03:25:43]  replicas=None
[2026-02-07 03:25:43]  scope=mc23_13p6TeV
[2026-02-07 03:25:43]  status=None
[2026-02-07 03:25:43]  status_code=0
[2026-02-07 03:25:43]  storage_token=
[2026-02-07 03:25:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6998620706/log.48318026._005157.job.log.tgz.1
[2026-02-07 03:25:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/cc/log.48318026._005157.job.log.tgz.1
[2026-02-07 03:25:43]  workdir=None
[2026-02-07 03:25:43] ]
[2026-02-07 03:25:43] 2026-02-07 08:25:06,271 | INFO     | transferring file log.48318026._005157.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6998620706/log.48318026._005157.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-07 03:25:43] 2026-02-07 08:25:06,271 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6998620706/log.48318026._005157.job.log.tgz.1 /tmp/boinchome/slots/0/log.48318026._005157.job
[2026-02-07 03:25:43] 2026-02-07 08:25:06,308 | INFO     | adding to output.list: log.48318026._005157.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/cc/log.48318026._005157.job.log.tg
[2026-02-07 03:25:43] 2026-02-07 08:25:06,309 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 03:25:43] 2026-02-07 08:25:06,309 | INFO     | summary of transferred files:
[2026-02-07 03:25:43] 2026-02-07 08:25:06,309 | INFO     |  -- lfn=log.48318026._005157.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 03:25:43] 2026-02-07 08:25:06,310 | INFO     | stage-out finished correctly
[2026-02-07 03:25:43] 2026-02-07 08:25:07,643 | INFO     | time since job start (4681s) is within the limit (349056.0s)
[2026-02-07 03:25:43] 2026-02-07 08:25:08,584 | WARNING  | process 13596 can no longer be monitored (due to stat problems) - aborting
[2026-02-07 03:25:43] 2026-02-07 08:25:08,584 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6998620706/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 03:25:43] 2026-02-07 08:25:08,698 | INFO     | number of running child processes to parent process 13596: 1
[2026-02-07 03:25:43] 2026-02-07 08:25:08,698 | INFO     | maximum number of monitored processes: 6
[2026-02-07 03:25:43] 2026-02-07 08:25:08,789 | INFO     | PID=9165 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-07 03:25:43] 2026-02-07 08:25:09,752 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 03:25:43] 2026-02-07 08:25:09,794 | INFO     | time since job start (4683s) is within the limit (349056.0s)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,833 | INFO     | job 6998620706 has state=finished
[2026-02-07 03:25:43] 2026-02-07 08:25:09,833 | INFO     | preparing for final server update for job 6998620706 in state='finished'
[2026-02-07 03:25:43] 2026-02-07 08:25:09,833 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6998620706/jobReport.json
[2026-02-07 03:25:43] 2026-02-07 08:25:09,836 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-07 03:25:43] 2026-02-07 08:25:09,836 | INFO     | this job has now completed (state=finished)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,837 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,837 | INFO     | log transfer has been attempted: DONE
[2026-02-07 03:25:43] 2026-02-07 08:25:09,837 | INFO     | job 6998620706 has finished - writing final server update
[2026-02-07 03:25:43] 2026-02-07 08:25:09,837 | INFO     | total number of processed events: 400 (read)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,839 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6998620706/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,840 | INFO     | extracted standard info from prmon json
[2026-02-07 03:25:43] 2026-02-07 08:25:09,840 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 03:25:43] 2026-02-07 08:25:09,840 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 03:25:43] 2026-02-07 08:25:09,840 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 03:25:43] 2026-02-07 08:25:09,840 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 03:25:43] 2026-02-07 08:25:09,842 | INFO     | fitting pss+swap vs Time
[2026-02-07 03:25:43] 2026-02-07 08:25:09,842 | INFO     | sum of square deviations: 106336877.5
[2026-02-07 03:25:43] 2026-02-07 08:25:09,842 | INFO     | sum of deviations: -2410465020.0
[2026-02-07 03:25:43] 2026-02-07 08:25:09,842 | INFO     | mean x: 1770450460.5
[2026-02-07 03:25:43] 2026-02-07 08:25:09,842 | INFO     | mean y: 2706473.5142857144
[2026-02-07 03:25:43] 2026-02-07 08:25:09,842 | INFO     | intersect: 40135621836.56076
[2026-02-07 03:25:43] 2026-02-07 08:25:09,843 | INFO     | chi2: 0.03791797396121475
[2026-02-07 03:25:43] 2026-02-07 08:25:09,843 | INFO     | current memory leak: -22.67 B/s (using 70 data points, chi2=0.04)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,843 | INFO     | could have reported an average CPU frequency of 1695 MHz (6 samples)
[2026-02-07 03:25:43] 2026-02-07 08:25:09,843 | INFO     | ..............................
[2026-02-07 03:25:43] 2026-02-07 08:25:09,843 | INFO     | . Timing measurements:
[2026-02-07 03:25:43] 2026-02-07 08:25:09,843 | INFO     | . get job = 0 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | . initial setup = 7 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | . payload setup = 7 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | . stage-in = 0 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | . payload execution = 4657 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | . stage-out = 0 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | . log creation = 0 s
[2026-02-07 03:25:43] 2026-02-07 08:25:09,844 | INFO     | ..............................
[2026-02-07 03:25:43] 2026-02-07 08:25:10,310 | INFO     | 
[2026-02-07 03:25:43] 2026-02-07 08:25:10,310 | INFO     | job summary report
[2026-02-07 03:25:43] 2026-02-07 08:25:10,310 | INFO     | --------------------------------------------------
[2026-02-07 03:25:43] 2026-02-07 08:25:10,310 | INFO     | PanDA job id: 6998620706
[2026-02-07 03:25:43] 2026-02-07 08:25:10,311 | INFO     | task id: 48318026
[2026-02-07 03:25:43] 2026-02-07 08:25:10,311 | INFO     | errors: (none)
[2026-02-07 03:25:43] 2026-02-07 08:25:10,311 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 03:25:43] 2026-02-07 08:25:10,311 | INFO     | pilot state: finished 
[2026-02-07 03:25:43] 2026-02-07 08:25:10,311 | INFO     | transexitcode: 0
[2026-02-07 03:25:43] 2026-02-07 08:25:10,311 | INFO     | exeerrorcode: 0
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | exeerrordiag: 
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | exitcode: 0
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | exitmsg: OK
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | cpuconsumptiontime: 50176 s
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | nevents: 400
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | neventsw: 0
[2026-02-07 03:25:43] 2026-02-07 08:25:10,312 | INFO     | pid: 13596
[2026-02-07 03:25:43] 2026-02-07 08:25:10,313 | INFO     | pgrp: 13596
[2026-02-07 03:25:43] 2026-02-07 08:25:10,313 | INFO     | corecount: 12
[2026-02-07 03:25:43] 2026-02-07 08:25:10,313 | INFO     | event service: False
[2026-02-07 03:25:43] 2026-02-07 08:25:10,313 | INFO     | sizes: {0: 2281996, 1: 2283114, 12: 2283114, 4667: 2309297, 4668: 2318350, 4672: 2318672}
[2026-02-07 03:25:43] 2026-02-07 08:25:10,313 | INFO     | --------------------------------------------------
[2026-02-07 03:25:43] 2026-02-07 08:25:10,313 | INFO     | 
[2026-02-07 03:25:43] 2026-02-07 08:25:10,314 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-07 03:25:43] 2026-02-07 08:25:10,338 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,338 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,338 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,338 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,339 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 03:25:43] 2026-02-07 08:25:10,340 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,341 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 03:25:43] 2026-02-07 08:25:10,341 | INFO     | job 6998620706 has completed (purged errors)
[2026-02-07 03:25:43] 2026-02-07 08:25:10,341 | INFO     | overall cleanup function is called
[2026-02-07 03:25:43] 2026-02-07 08:25:11,349 | INFO     | --- collectZombieJob: --- 10, [13596]
[2026-02-07 03:25:43] 2026-02-07 08:25:11,349 | INFO     | zombie collector waiting for pid 13596
[2026-02-07 03:25:43] 2026-02-07 08:25:11,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 03:25:43] 2026-02-07 08:25:11,350 | INFO     | collected zombie processes
[2026-02-07 03:25:43] 2026-02-07 08:25:11,350 | INFO     | will attempt to kill all subprocesses of pid=13596
[2026-02-07 03:25:43] 2026-02-07 08:25:11,441 | INFO     | process IDs to be killed: [13596] (in reverse order)
[2026-02-07 03:25:43] 2026-02-07 08:25:11,495 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 03:25:43] 2026-02-07 08:25:11,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 03:25:43] 2026-02-07 08:25:11,499 | INFO     | did not find any defunct processes belonging to 13596
[2026-02-07 03:25:43] 2026-02-07 08:25:11,501 | INFO     | did not find any defunct processes belonging to 13596
[2026-02-07 03:25:43] 2026-02-07 08:25:11,501 | INFO     | ready for new job
[2026-02-07 03:25:43] 2026-02-07 08:25:11,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 03:25:43] 2026-02-07 08:25:11,502 | INFO     | **************************************
[2026-02-07 03:25:43] 2026-02-07 08:25:11,503 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 03:25:43] 2026-02-07 08:25:11,503 | INFO     | **************************************
[2026-02-07 03:25:43] 2026-02-07 08:25:11,503 | INFO     | 
[2026-02-07 03:25:43] 2026-02-07 08:25:11,503 | INFO     | architecture information:
[2026-02-07 03:25:43] 2026-02-07 08:25:11,504 | INFO     | executing command: cat /etc/os-release
[2026-02-07 03:25:43] 2026-02-07 08:25:11,519 | INFO     | cat /etc/os-release:
[2026-02-07 03:25:43] NAME="CentOS Linux"
[2026-02-07 03:25:43] VERSION="7 (Core)"
[2026-02-07 03:25:43] ID="centos"
[2026-02-07 03:25:43] ID_LIKE="rhel fedora"
[2026-02-07 03:25:43] VERSION_ID="7"
[2026-02-07 03:25:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 03:25:43] ANSI_COLOR="0;31"
[2026-02-07 03:25:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 03:25:43] HOME_URL="https://www.centos.org/"
[2026-02-07 03:25:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 03:25:43] 
[2026-02-07 03:25:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 03:25:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 03:25:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 03:25:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 03:25:43] 
[2026-02-07 03:25:43] 2026-02-07 08:25:11,519 | INFO     | **************************************
[2026-02-07 03:25:43] 2026-02-07 08:25:12,021 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-07 03:25:43] 2026-02-07 08:25:12,037 | INFO     | sufficient remaining disk space (28702670848 B)
[2026-02-07 03:25:43] 2026-02-07 08:25:12,037 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 03:25:43] 2026-02-07 08:25:12,038 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 03:25:43] 2026-02-07 08:25:12,038 | INFO     | update_server=False
[2026-02-07 03:25:43] 2026-02-07 08:25:12,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 03:25:43] 2026-02-07 08:25:12,038 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 03:25:43] 2026-02-07 08:25:12,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 03:25:43] 2026-02-07 08:25:12,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 03:25:43] 2026-02-07 08:25:12,205 | INFO     | aborting loop
[2026-02-07 03:25:43] 2026-02-07 08:25:12,543 | INFO     | all data control threads have been joined
[2026-02-07 03:25:43] 2026-02-07 08:25:12,687 | INFO     | all job control threads have been joined
[2026-02-07 03:25:43] 2026-02-07 08:25:13,044 | INFO     | [job] retrieve thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,105 | INFO     | [monitor] cgroup control has ended
[2026-02-07 03:25:43] 2026-02-07 08:25:13,210 | INFO     | [job] job monitor thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,344 | INFO     | all payload control threads have been joined
[2026-02-07 03:25:43] 2026-02-07 08:25:13,548 | INFO     | [data] control thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,589 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,591 | INFO     | [data] copytool_in thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,688 | INFO     | [job] control thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,779 | INFO     | [payload] failed_post thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:13,856 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:14,044 | INFO     | [data] copytool_out thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:14,349 | INFO     | [payload] control thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:14,423 | INFO     | [job] validate thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:14,423 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:14,535 | INFO     | [payload] validate_post thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:14,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 03:25:43] 2026-02-07 08:25:15,933 | INFO     | [job] queue monitor thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:16,045 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:22,154 | INFO     | job.realtimelogging is not enabled
[2026-02-07 03:25:43] 2026-02-07 08:25:23,159 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 03:25:43] 2026-02-07 08:25:25,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709533337408)>', '<ExcThread(monitor, started 139708969510656)>']
[2026-02-07 03:25:43] 2026-02-07 08:25:30,038 | INFO     | all workflow threads have been joined
[2026-02-07 03:25:43] 2026-02-07 08:25:30,038 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 03:25:43] 2026-02-07 08:25:30,039 | INFO     | traces error code: 0
[2026-02-07 03:25:43] 2026-02-07 08:25:30,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 03:25:43] 2026-02-07 08:25:42,990 | INFO     | PID=9165 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-07 03:25:43] 2026-02-07 08:25:42,990 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 03:25:43] 2026-02-07 08:25:42,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 03:25:43] 2026-02-07 08:25:42,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 03:25:43] 2026-02-07 08:25:42,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 03:25:43] 2026-02-07 08:25:42,991 | INFO     | [monitor] control thread has ended
[2026-02-07 03:25:43] 2026-02-07 08:25:43,074 [wrapper] ==== pilot stdout END ====
[2026-02-07 03:25:43] 2026-02-07 08:25:43,078 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 03:25:43] 2026-02-07 08:25:43,081 [wrapper] pilotpid: 9165
[2026-02-07 03:25:43] 2026-02-07 08:25:43,085 [wrapper] Pilot exit status: 0
[2026-02-07 03:25:43] 2026-02-07 08:25:43,101 [wrapper] pandaids: 6998620706
[2026-02-07 03:25:43] 2026-02-07 08:25:43,141 [wrapper] cleanup supervisor_pilot  3449 9166
[2026-02-07 03:25:43] 2026-02-07 08:25:43,145 [wrapper] Test setup, not cleaning
[2026-02-07 03:25:43] 2026-02-07 08:25:43,149 [wrapper] apfmon messages muted
[2026-02-07 03:25:43] 2026-02-07 08:25:43,153 [wrapper] ==== wrapper stdout END ====
[2026-02-07 03:25:43] 2026-02-07 08:25:43,157 [wrapper] ==== wrapper stderr END ====
[2026-02-07 03:25:43]  *** Error codes and diagnostics ***
[2026-02-07 03:25:43]     "exeErrorCode": 0,
[2026-02-07 03:25:43]     "exeErrorDiag": "",
[2026-02-07 03:25:43]     "pilotErrorCode": 0,
[2026-02-07 03:25:43]     "pilotErrorDiag": "",
[2026-02-07 03:25:43]  *** Listing of results directory ***
[2026-02-07 03:25:43] total 724904
[2026-02-07 03:25:43] -rwx------ 1 boincer umatlas     36322 Feb  6 20:46 runpilot2-wrapper.sh
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas    584627 Feb  6 20:47 pilot3.tar.gz
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas      5111 Feb  6 20:50 queuedata.json
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas       100 Feb  7 02:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 03:25:43] -rwxr-xr-x 1 boincer umatlas      7986 Feb  7 02:06 run_atlas
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas       105 Feb  7 02:06 job.xml
[2026-02-07 03:25:43] -rw-r--r-- 2 boincer umatlas 537578635 Feb  7 02:06 EVNT.48318024._000103.pool.root.1
[2026-02-07 03:25:43] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 02:06 start_atlas.sh
[2026-02-07 03:25:43] drwxrwx--x 2 boincer umatlas      4096 Feb  7 02:06 shared
[2026-02-07 03:25:43] -rw-r--r-- 2 boincer umatlas    597962 Feb  7 02:06 input.tar.gz
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas         0 Feb  7 02:06 boinc_lockfile
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas      2528 Feb  7 02:06 pandaJob.out
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas        57 Feb  7 02:06 setup.sh.local
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas   1009512 Feb  7 02:06 agis_schedconf.cvmfs.json
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas   1513088 Feb  7 02:07 agis_ddmendpoints.agis.ALL.json
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas       445 Feb  7 02:07 workernode_map.json
[2026-02-07 03:25:43] drwx------ 5 boincer umatlas      4096 Feb  7 02:07 pilot3
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas      5953 Feb  7 03:18 init_data.xml
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas 198585334 Feb  7 03:24 HITS.48318026._005157.pool.root.1
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas       530 Feb  7 03:24 boinc_task_state.xml
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas      1045 Feb  7 03:25 memory_monitor_summary.json
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas        95 Feb  7 03:25 pilot_heartbeat.json
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas    417634 Feb  7 03:25 log.48318026._005157.job.log.tgz.1
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas      6426 Feb  7 03:25 heartbeat.json
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas      8192 Feb  7 03:25 boinc_mmap_file
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas        27 Feb  7 03:25 wrapper_checkpoint.txt
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas       744 Feb  7 03:25 pilotlog.txt
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas    680238 Feb  7 03:25 log.48318026._005157.job.log.1
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas       357 Feb  7 03:25 output.list
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas       620 Feb  7 03:25 runtime_log
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas   1116160 Feb  7 03:25 result.tar.gz
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas      9343 Feb  7 03:25 runtime_log.err
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas       659 Feb  7 03:25 iRqNDmRam88n9Rq4apOajLDm4fhM0noT9bVooX4SDmkzZKDm9EXGQn.diag
[2026-02-07 03:25:43] -rw-r--r-- 1 boincer umatlas     21518 Feb  7 03:25 stderr.txt
[2026-02-07 03:25:43] HITS file was successfully produced:
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas 198585334 Feb  7 03:24 shared/HITS.pool.root.1
[2026-02-07 03:25:43]  *** Contents of shared directory: ***
[2026-02-07 03:25:43] total 720612
[2026-02-07 03:25:43] -rw-r--r-- 2 boincer umatlas 537578635 Feb  7 02:06 ATLAS.root_0
[2026-02-07 03:25:43] -rw-r--r-- 2 boincer umatlas     15845 Feb  7 02:06 start_atlas.sh
[2026-02-07 03:25:43] -rw-r--r-- 2 boincer umatlas    597962 Feb  7 02:06 input.tar.gz
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas 198585334 Feb  7 03:24 HITS.pool.root.1
[2026-02-07 03:25:43] -rw------- 1 boincer umatlas   1116160 Feb  7 03:25 result.tar.gz
03:25:44 (5480): run_atlas exited; CPU time 50155.394627
03:25:44 (5480): called boinc_finish(0)

</stderr_txt>
]]>

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