Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:45:52 (2899898): wrapper (7.7.26015): starting
14:45:52 (2899898): wrapper: running run_atlas (--nthreads 4)
[2026-02-07 14:45:52] Arguments: --nthreads 4
[2026-02-07 14:45:52] Threads: 4
[2026-02-07 14:45:52] Checking for CVMFS
[2026-02-07 14:45:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 14:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 14:46:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 14:46:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 14:46:14] 2.9.2.0 2540927 1902 87852 155985 1 50 36306911 36864000 0 130560 0 956872 99.985 75460 16137 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 14:46:14] CVMFS is ok
[2026-02-07 14:46:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 14:46:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 14:46:14] Further information can be found at the LHC@home message board.
[2026-02-07 14:46:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 14:46:14] Checking for apptainer binary...
[2026-02-07 14:46:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 14:46:14] Running /usr/bin/apptainer --version
[2026-02-07 14:46:14] apptainer version 1.4.1-1.1
[2026-02-07 14:46:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 14:46:14] thA319
[2026-02-07 14:46:14] apptainer works
[2026-02-07 14:46:14] Set ATHENA_PROC_NUMBER=4
[2026-02-07 14:46:14] Set ATHENA_CORE_NUMBER=4
[2026-02-07 14:46:14] Starting ATLAS job with PandaID=7004737144
[2026-02-07 14:46:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 16:22:45]  *** The last 200 lines of the pilot log: ***
[2026-02-07 16:22:45] 2026-02-07 15:22:13,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | job 7004737144 has completed (purged errors)
[2026-02-07 16:22:45] 2026-02-07 15:22:13,189 | INFO     | overall cleanup function is called
[2026-02-07 16:22:45] 2026-02-07 15:22:14,192 | INFO     | --- collectZombieJob: --- 10, [2908543]
[2026-02-07 16:22:45] 2026-02-07 15:22:14,192 | INFO     | zombie collector waiting for pid 2908543
[2026-02-07 16:22:45] 2026-02-07 15:22:14,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 16:22:45] 2026-02-07 15:22:14,193 | INFO     | collected zombie processes
[2026-02-07 16:22:45] 2026-02-07 15:22:14,193 | INFO     | will attempt to kill all subprocesses of pid=2908543
[2026-02-07 16:22:45] 2026-02-07 15:22:14,243 | INFO     | process IDs to be killed: [2908543] (in reverse order)
[2026-02-07 16:22:45] 2026-02-07 15:22:14,275 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 16:22:45] 2026-02-07 15:22:14,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 16:22:45] 2026-02-07 15:22:14,278 | INFO     | did not find any defunct processes belonging to 2908543
[2026-02-07 16:22:45] 2026-02-07 15:22:14,279 | INFO     | did not find any defunct processes belonging to 2908543
[2026-02-07 16:22:45] 2026-02-07 15:22:14,279 | INFO     | ready for new job
[2026-02-07 16:22:45] 2026-02-07 15:22:14,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 16:22:45] 2026-02-07 15:22:14,280 | INFO     | **************************************
[2026-02-07 16:22:45] 2026-02-07 15:22:14,280 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 16:22:45] 2026-02-07 15:22:14,280 | INFO     | **************************************
[2026-02-07 16:22:45] 2026-02-07 15:22:14,280 | INFO     | 
[2026-02-07 16:22:45] 2026-02-07 15:22:14,281 | INFO     | architecture information:
[2026-02-07 16:22:45] 2026-02-07 15:22:14,281 | INFO     | executing command: cat /etc/os-release
[2026-02-07 16:22:45] 2026-02-07 15:22:14,294 | INFO     | cat /etc/os-release:
[2026-02-07 16:22:45] NAME="CentOS Linux"
[2026-02-07 16:22:45] VERSION="7 (Core)"
[2026-02-07 16:22:45] ID="centos"
[2026-02-07 16:22:45] ID_LIKE="rhel fedora"
[2026-02-07 16:22:45] VERSION_ID="7"
[2026-02-07 16:22:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 16:22:45] ANSI_COLOR="0;31"
[2026-02-07 16:22:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 16:22:45] HOME_URL="https://www.centos.org/"
[2026-02-07 16:22:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 16:22:45] 
[2026-02-07 16:22:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 16:22:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 16:22:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 16:22:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 16:22:45] 
[2026-02-07 16:22:45] 2026-02-07 15:22:14,294 | INFO     | **************************************
[2026-02-07 16:22:45] 2026-02-07 15:22:14,797 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 16:22:45] 2026-02-07 15:22:14,814 | INFO     | sufficient remaining disk space (314979647488 B)
[2026-02-07 16:22:45] 2026-02-07 15:22:14,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 16:22:45] 2026-02-07 15:22:14,814 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 16:22:45] 2026-02-07 15:22:14,814 | INFO     | update_server=False
[2026-02-07 16:22:45] 2026-02-07 15:22:14,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 16:22:45] 2026-02-07 15:22:14,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 16:22:45] 2026-02-07 15:22:14,827 | INFO     | all job control threads have been joined
[2026-02-07 16:22:45] 2026-02-07 15:22:14,934 | INFO     | all data control threads have been joined
[2026-02-07 16:22:45] 2026-02-07 15:22:15,010 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 16:22:45] 2026-02-07 15:22:15,011 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 16:22:45] 2026-02-07 15:22:15,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 16:22:45] 2026-02-07 15:22:15,011 | INFO     | will abort loop
[2026-02-07 16:22:45] 2026-02-07 15:22:15,139 | INFO     | all payload control threads have been joined
[2026-02-07 16:22:45] 2026-02-07 15:22:15,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 16:22:45] 2026-02-07 15:22:15,816 | INFO     | [job] queue monitor thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:15,820 | INFO     | [job] retrieve thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:15,833 | INFO     | [job] control thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:15,871 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:15,940 | INFO     | [data] control thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:16,016 | INFO     | [job] job monitor thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:16,023 | INFO     | [data] copytool_in thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:16,145 | INFO     | [payload] control thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:16,165 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:16,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 16:22:45] 2026-02-07 15:22:16,503 | INFO     | [payload] failed_post thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:17,044 | INFO     | [payload] validate_post thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:17,194 | INFO     | [job] validate thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:17,197 | INFO     | [data] copytool_out thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:17,311 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:20,304 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:25,512 | INFO     | job.realtimelogging is not enabled
[2026-02-07 16:22:45] 2026-02-07 15:22:26,518 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 16:22:45] 2026-02-07 15:22:33,283 | INFO     | [monitor] cgroup control has ended
[2026-02-07 16:22:45] 2026-02-07 15:22:34,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216741177152)>', '<ExcThread(monitor, started 140215574324992)>']
[2026-02-07 16:22:45] 2026-02-07 15:22:39,792 | INFO     | all workflow threads have been joined
[2026-02-07 16:22:45] 2026-02-07 15:22:39,793 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 16:22:45] 2026-02-07 15:22:39,793 | INFO     | traces error code: 0
[2026-02-07 16:22:45] 2026-02-07 15:22:39,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 16:22:45] 2026-02-07 15:22:44,983 | INFO     | PID=2904030 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 16:22:45] 2026-02-07 15:22:44,983 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 16:22:45] 2026-02-07 15:22:44,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 16:22:45] 2026-02-07 15:22:44,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 16:22:45] 2026-02-07 15:22:44,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 16:22:45] 2026-02-07 15:22:44,983 | INFO     | [monitor] control thread has ended
[2026-02-07 16:22:45] 2026-02-07 15:22:45,047 [wrapper] ==== pilot stdout END ====
[2026-02-07 16:22:45] 2026-02-07 15:22:45,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 16:22:45] 2026-02-07 15:22:45,055 [wrapper] pilotpid: 2904030
[2026-02-07 16:22:45] 2026-02-07 15:22:45,059 [wrapper] Pilot exit status: 0
[2026-02-07 16:22:45] 2026-02-07 15:22:45,069 [wrapper] pandaids: 7004737144
[2026-02-07 16:22:45] 2026-02-07 15:22:45,091 [wrapper] cleanup supervisor_pilot 2914746 2904031
[2026-02-07 16:22:45] 2026-02-07 15:22:45,095 [wrapper] Test setup, not cleaning
[2026-02-07 16:22:45] 2026-02-07 15:22:45,099 [wrapper] apfmon messages muted
[2026-02-07 16:22:45] 2026-02-07 15:22:45,102 [wrapper] ==== wrapper stdout END ====
[2026-02-07 16:22:45] 2026-02-07 15:22:45,105 [wrapper] ==== wrapper stderr END ====
[2026-02-07 16:22:45]  *** Error codes and diagnostics ***
[2026-02-07 16:22:45]     "exeErrorCode": 0,
[2026-02-07 16:22:45]     "exeErrorDiag": "",
[2026-02-07 16:22:45]     "pilotErrorCode": 0,
[2026-02-07 16:22:45]     "pilotErrorDiag": "",
[2026-02-07 16:22:45]  *** Listing of results directory ***
[2026-02-07 16:22:45] total 897328
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc    584627 Feb  6 21:57 pilot3.tar.gz
[2026-02-07 16:22:45] -rwx------ 1 boinc boinc     36322 Feb  6 21:59 runpilot2-wrapper.sh
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc      5111 Feb  6 21:59 queuedata.json
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc       100 Feb  7 14:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 16:22:45] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 14:45 run_atlas
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc       105 Feb  7 14:45 job.xml
[2026-02-07 16:22:45] -rw-r--r-- 2 boinc boinc 657828637 Feb  7 14:45 EVNT.48431078._000207.pool.root.1
[2026-02-07 16:22:45] -rw-r--r-- 2 boinc boinc    597969 Feb  7 14:45 input.tar.gz
[2026-02-07 16:22:45] -rw-r--r-- 2 boinc boinc     15845 Feb  7 14:45 start_atlas.sh
[2026-02-07 16:22:45] drwxrwx--x 2 boinc boinc      4096 Feb  7 14:45 shared
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc         0 Feb  7 14:45 boinc_setup_complete
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc      6369 Feb  7 14:45 init_data.xml
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc         0 Feb  7 14:45 boinc_lockfile
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc      2559 Feb  7 14:46 pandaJob.out
[2026-02-07 16:22:45] -rw------- 1 boinc boinc   1009510 Feb  7 14:46 agis_schedconf.cvmfs.json
[2026-02-07 16:22:45] -rw------- 1 boinc boinc   1513088 Feb  7 14:46 agis_ddmendpoints.agis.ALL.json
[2026-02-07 16:22:45] -rw------- 1 boinc boinc       427 Feb  7 14:46 workernode_map.json
[2026-02-07 16:22:45] drwx------ 5 boinc boinc      4096 Feb  7 14:46 pilot3
[2026-02-07 16:22:45] -rw------- 1 boinc boinc 254889239 Feb  7 16:21 HITS.48431080._013282.pool.root.1
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc       530 Feb  7 16:21 boinc_task_state.xml
[2026-02-07 16:22:45] -rw------- 1 boinc boinc        95 Feb  7 16:21 pilot_heartbeat.json
[2026-02-07 16:22:45] -rw------- 1 boinc boinc      1019 Feb  7 16:22 memory_monitor_summary.json
[2026-02-07 16:22:45] -rw------- 1 boinc boinc    277455 Feb  7 16:22 log.48431080._013282.job.log.tgz.1
[2026-02-07 16:22:45] -rw------- 1 boinc boinc      6312 Feb  7 16:22 heartbeat.json
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc        27 Feb  7 16:22 wrapper_checkpoint.txt
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc      8192 Feb  7 16:22 boinc_mmap_file
[2026-02-07 16:22:45] -rw------- 1 boinc boinc       747 Feb  7 16:22 pilotlog.txt
[2026-02-07 16:22:45] -rw------- 1 boinc boinc    834008 Feb  7 16:22 log.48431080._013282.job.log.1
[2026-02-07 16:22:45] -rw------- 1 boinc boinc       357 Feb  7 16:22 output.list
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc       620 Feb  7 16:22 runtime_log
[2026-02-07 16:22:45] -rw------- 1 boinc boinc   1126400 Feb  7 16:22 result.tar.gz
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc      8896 Feb  7 16:22 runtime_log.err
[2026-02-07 16:22:45] -rw------- 1 boinc boinc       657 Feb  7 16:22 XhwLDm95h88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm5mZKDmM5G0tm.diag
[2026-02-07 16:22:45] -rw-r--r-- 1 boinc boinc     12771 Feb  7 16:22 stderr.txt
[2026-02-07 16:22:45] HITS file was successfully produced:
[2026-02-07 16:22:45] -rw------- 1 boinc boinc 254889239 Feb  7 16:21 shared/HITS.pool.root.1
[2026-02-07 16:22:45]  *** Contents of shared directory: ***
[2026-02-07 16:22:45] total 893036
[2026-02-07 16:22:45] -rw-r--r-- 2 boinc boinc 657828637 Feb  7 14:45 ATLAS.root_0
[2026-02-07 16:22:45] -rw-r--r-- 2 boinc boinc    597969 Feb  7 14:45 input.tar.gz
[2026-02-07 16:22:45] -rw-r--r-- 2 boinc boinc     15845 Feb  7 14:45 start_atlas.sh
[2026-02-07 16:22:45] -rw------- 1 boinc boinc 254889239 Feb  7 16:21 HITS.pool.root.1
[2026-02-07 16:22:45] -rw------- 1 boinc boinc   1126400 Feb  7 16:22 result.tar.gz
16:23:06 (2899898): run_atlas exited; CPU time 21921.004480
16:23:06 (2899898): called boinc_finish(0)

</stderr_txt>
]]>

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