Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
03:55:32 (3269071): wrapper (7.7.26015): starting
03:55:32 (3269071): wrapper: running run_atlas (--nthreads 4)
[2026-02-07 03:55:32] Arguments: --nthreads 4
[2026-02-07 03:55:32] Threads: 4
[2026-02-07 03:55:32] Checking for CVMFS
[2026-02-07 03:55:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 03:55:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 03:55:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 03:55:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 03:55:33] 2.13.1.0 2692303 1074 80208 155967 0 188 8906390 10240001 1822 130560 0 1240163 99.992 42731 281 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-07 03:55:33] CVMFS is ok
[2026-02-07 03:55:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 03:55:33] Checking for apptainer binary...
[2026-02-07 03:55:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 03:55:33] Running /usr/bin/apptainer --version
[2026-02-07 03:55:33] apptainer version 1.4.5
[2026-02-07 03:55:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 03:55:34] peachesvl
[2026-02-07 03:55:34] apptainer works
[2026-02-07 03:55:34] Set ATHENA_PROC_NUMBER=4
[2026-02-07 03:55:34] Set ATHENA_CORE_NUMBER=4
[2026-02-07 03:55:34] Starting ATLAS job with PandaID=7004734096
[2026-02-07 03:55:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 06:04:27]  *** The last 200 lines of the pilot log: ***
[2026-02-07 06:04:27] 2026-02-07 05:03:27,158 | INFO     | time since job start (7636s) is within the limit (349056.0s)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,268 | INFO     | job 7004734096 has state=finished
[2026-02-07 06:04:27] 2026-02-07 05:03:27,268 | INFO     | preparing for final server update for job 7004734096 in state='finished'
[2026-02-07 06:04:27] 2026-02-07 05:03:27,269 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-7004734096/jobReport.json
[2026-02-07 06:04:27] 2026-02-07 05:03:27,272 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/3/workernode_map.json
[2026-02-07 06:04:27] 2026-02-07 05:03:27,272 | INFO     | this job has now completed (state=finished)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,272 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,272 | INFO     | log transfer has been attempted: DONE
[2026-02-07 06:04:27] 2026-02-07 05:03:27,273 | INFO     | job 7004734096 has finished - writing final server update
[2026-02-07 06:04:27] 2026-02-07 05:03:27,273 | INFO     | total number of processed events: 400 (read)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,277 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-7004734096/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,278 | INFO     | extracted standard info from prmon json
[2026-02-07 06:04:27] 2026-02-07 05:03:27,278 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 06:04:27] 2026-02-07 05:03:27,278 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 06:04:27] 2026-02-07 05:03:27,278 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 06:04:27] 2026-02-07 05:03:27,279 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 06:04:27] 2026-02-07 05:03:27,281 | INFO     | fitting pss+swap vs Time
[2026-02-07 06:04:27] 2026-02-07 05:03:27,281 | INFO     | sum of square deviations: 605592750.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,282 | INFO     | sum of deviations: 18807628458.000004
[2026-02-07 06:04:27] 2026-02-07 05:03:27,282 | INFO     | mean x: 1770436790.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,282 | INFO     | mean y: 2325259.24
[2026-02-07 06:04:27] 2026-02-07 05:03:27,282 | INFO     | intersect: -54981353714.28499
[2026-02-07 06:04:27] 2026-02-07 05:03:27,283 | INFO     | chi2: 2.0155038466821744
[2026-02-07 06:04:27] 2026-02-07 05:03:27,283 | INFO     | sum of square deviations: 535786790.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,284 | INFO     | sum of deviations: 18107478570.999996
[2026-02-07 06:04:27] 2026-02-07 05:03:27,284 | INFO     | mean x: 1770436637.5
[2026-02-07 06:04:27] 2026-02-07 05:03:27,284 | INFO     | mean y: 2323728.8833333333
[2026-02-07 06:04:27] 2026-02-07 05:03:27,284 | INFO     | intersect: -59831446108.638306
[2026-02-07 06:04:27] 2026-02-07 05:03:27,284 | INFO     | chi2: 2.0195691160090385
[2026-02-07 06:04:27] 2026-02-07 05:03:27,284 | INFO     | current chi2=2.0195691160090385 (change=-0.20169990414834388 %)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,285 | INFO     | right removable region: 119
[2026-02-07 06:04:27] 2026-02-07 05:03:27,285 | INFO     | sum of square deviations: 535786790.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,285 | INFO     | sum of deviations: -4973038602.999999
[2026-02-07 06:04:27] 2026-02-07 05:03:27,285 | INFO     | mean x: 1770436942.5
[2026-02-07 06:04:27] 2026-02-07 05:03:27,286 | INFO     | mean y: 2376629.466666667
[2026-02-07 06:04:27] 2026-02-07 05:03:27,286 | INFO     | intersect: 16435128282.84317
[2026-02-07 06:04:27] 2026-02-07 05:03:27,286 | INFO     | chi2: 0.04146141751686284
[2026-02-07 06:04:27] 2026-02-07 05:03:27,286 | INFO     | current chi2=0.04146141751686284 (change=97.94287579331021 %)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,286 | INFO     | sum of square deviations: 471562330.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,287 | INFO     | sum of deviations: -3279419475.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,287 | INFO     | mean x: 1770437095.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,287 | INFO     | mean y: 2372545.6782608693
[2026-02-07 06:04:27] 2026-02-07 05:03:27,288 | INFO     | intersect: 12314649246.417747
[2026-02-07 06:04:27] 2026-02-07 05:03:27,288 | INFO     | chi2: 0.033733256980828824
[2026-02-07 06:04:27] 2026-02-07 05:03:27,288 | INFO     | current chi2=0.033733256980828824 (change=18.639402603374286 %)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,289 | INFO     | left removable region: 20
[2026-02-07 06:04:27] 2026-02-07 05:03:27,289 | INFO     | sum of square deviations: 300842850.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,290 | INFO     | sum of deviations: 468248566.00000006
[2026-02-07 06:04:27] 2026-02-07 05:03:27,290 | INFO     | mean x: 1770437217.0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,290 | INFO     | mean y: 2362838.484848485
[2026-02-07 06:04:27] 2026-02-07 05:03:27,290 | INFO     | intersect: -2753244243.5956492
[2026-02-07 06:04:27] 2026-02-07 05:03:27,290 | INFO     | chi2: 0.0002514896986890097
[2026-02-07 06:04:27] 2026-02-07 05:03:27,291 | INFO     | current memory leak: 1.56 B/s (using 99 data points, chi2=0.00)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,291 | INFO     | could have reported an average CPU frequency of 3700 MHz (8 samples)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,291 | INFO     | ..............................
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . Timing measurements:
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . get job = 0 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . initial setup = 13 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . payload setup = 15 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . stage-in = 0 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . payload execution = 7599 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . stage-out = 0 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | . log creation = 0 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,292 | INFO     | ..............................
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | 
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | job summary report
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | --------------------------------------------------
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | PanDA job id: 7004734096
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | task id: 48431080
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | errors: (none)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,363 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | pilot state: finished 
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | transexitcode: 0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | exeerrorcode: 0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | exeerrordiag: 
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | exitcode: 0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | exitmsg: OK
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | cpuconsumptiontime: 28845 s
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | nevents: 400
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | neventsw: 0
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | pid: 3277531
[2026-02-07 06:04:27] 2026-02-07 05:03:27,364 | INFO     | pgrp: 3277531
[2026-02-07 06:04:27] 2026-02-07 05:03:27,365 | INFO     | corecount: 4
[2026-02-07 06:04:27] 2026-02-07 05:03:27,365 | INFO     | event service: False
[2026-02-07 06:04:27] 2026-02-07 05:03:27,365 | INFO     | sizes: {0: 2282886, 1: 2283092, 11: 2283120, 7618: 2310795, 7621: 2319821, 7623: 2319877, 7625: 2320199}
[2026-02-07 06:04:27] 2026-02-07 05:03:27,365 | INFO     | --------------------------------------------------
[2026-02-07 06:04:27] 2026-02-07 05:03:27,365 | INFO     | 
[2026-02-07 06:04:27] 2026-02-07 05:03:27,365 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/3
[2026-02-07 06:04:27] 2026-02-07 05:03:27,410 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,411 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,413 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 06:04:27] 2026-02-07 05:03:27,414 | INFO     | job 7004734096 has completed (purged errors)
[2026-02-07 06:04:27] 2026-02-07 05:03:27,414 | INFO     | overall cleanup function is called
[2026-02-07 06:04:27] 2026-02-07 05:03:28,424 | INFO     | --- collectZombieJob: --- 10, [3277531]
[2026-02-07 06:04:27] 2026-02-07 05:03:28,425 | INFO     | zombie collector waiting for pid 3277531
[2026-02-07 06:04:27] 2026-02-07 05:03:28,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 06:04:27] 2026-02-07 05:03:28,425 | INFO     | collected zombie processes
[2026-02-07 06:04:27] 2026-02-07 05:03:28,425 | INFO     | will attempt to kill all subprocesses of pid=3277531
[2026-02-07 06:04:27] 2026-02-07 05:03:28,806 | INFO     | process IDs to be killed: [3277531] (in reverse order)
[2026-02-07 06:04:27] 2026-02-07 05:03:28,957 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 06:04:27] 2026-02-07 05:03:28,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 06:04:27] 2026-02-07 05:03:28,967 | INFO     | did not find any defunct processes belonging to 3277531
[2026-02-07 06:04:27] 2026-02-07 05:03:28,977 | INFO     | did not find any defunct processes belonging to 3277531
[2026-02-07 06:04:27] 2026-02-07 05:03:28,978 | INFO     | ready for new job
[2026-02-07 06:04:27] 2026-02-07 05:03:28,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 06:04:27] 2026-02-07 05:03:28,983 | INFO     | **************************************
[2026-02-07 06:04:27] 2026-02-07 05:03:28,983 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 06:04:27] 2026-02-07 05:03:28,983 | INFO     | **************************************
[2026-02-07 06:04:27] 2026-02-07 05:03:28,983 | INFO     | 
[2026-02-07 06:04:27] 2026-02-07 05:03:28,985 | INFO     | pilot is running in a VM
[2026-02-07 06:04:27] 2026-02-07 05:03:28,985 | INFO     | architecture information:
[2026-02-07 06:04:27] 2026-02-07 05:03:28,986 | INFO     | executing command: cat /etc/os-release
[2026-02-07 06:04:27] 2026-02-07 05:03:29,019 | INFO     | cat /etc/os-release:
[2026-02-07 06:04:27] NAME="CentOS Linux"
[2026-02-07 06:04:27] VERSION="7 (Core)"
[2026-02-07 06:04:27] ID="centos"
[2026-02-07 06:04:27] ID_LIKE="rhel fedora"
[2026-02-07 06:04:27] VERSION_ID="7"
[2026-02-07 06:04:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 06:04:27] ANSI_COLOR="0;31"
[2026-02-07 06:04:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 06:04:27] HOME_URL="https://www.centos.org/"
[2026-02-07 06:04:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 06:04:27] 
[2026-02-07 06:04:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 06:04:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 06:04:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 06:04:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 06:04:27] 
[2026-02-07 06:04:27] 2026-02-07 05:03:29,020 | INFO     | **************************************
[2026-02-07 06:04:27] 2026-02-07 05:03:29,524 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/3
[2026-02-07 06:04:27] 2026-02-07 05:03:29,558 | INFO     | sufficient remaining disk space (54955868160 B)
[2026-02-07 06:04:27] 2026-02-07 05:03:29,559 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 06:04:27] 2026-02-07 05:03:29,560 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 06:04:27] 2026-02-07 05:03:29,560 | INFO     | update_server=False
[2026-02-07 06:04:27] 2026-02-07 05:03:29,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 06:04:27] 2026-02-07 05:03:29,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 06:04:27] 2026-02-07 05:03:29,562 | INFO     | aborting loop
[2026-02-07 06:04:27] 2026-02-07 05:03:29,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 06:04:27] 2026-02-07 05:03:29,707 | INFO     | all data control threads have been joined
[2026-02-07 06:04:27] 2026-02-07 05:03:29,910 | INFO     | all job control threads have been joined
[2026-02-07 06:04:27] 2026-02-07 05:03:30,426 | INFO     | all payload control threads have been joined
[2026-02-07 06:04:27] 2026-02-07 05:03:30,566 | INFO     | [job] retrieve thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,567 | INFO     | [job] job monitor thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,714 | INFO     | [data] control thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,745 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,761 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,800 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,916 | INFO     | [job] control thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:30,985 | INFO     | [payload] failed_post thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:31,259 | INFO     | [data] copytool_in thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:31,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 06:04:27] 2026-02-07 05:03:31,433 | INFO     | [payload] control thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:31,569 | INFO     | [payload] validate_post thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:31,570 | INFO     | [data] copytool_out thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:31,837 | INFO     | [job] validate thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:32,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 06:04:27] 2026-02-07 05:03:33,382 | INFO     | [job] queue monitor thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:03:35,332 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 06:04:27] 2026-02-07 05:04:00,604 | INFO     | PID=3273000 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 06:04:27] 2026-02-07 05:04:00,604 | INFO     | .. there are 3 such processes running
[2026-02-07 06:04:27] 2026-02-07 05:04:00,605 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 06:04:27] 2026-02-07 05:04:00,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 06:04:27] 2026-02-07 05:04:00,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 06:04:27] 2026-02-07 05:04:21,100 | INFO     | [monitor] cgroup control has ended
[2026-02-07 06:04:27] 2026-02-07 05:04:21,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129510100682560)>', '<ExcThread(monitor, started 129508497684224)>']
[2026-02-07 06:04:27] 2026-02-07 05:04:21,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 06:04:27] 2026-02-07 05:04:21,723 | INFO     | [monitor] control thread has ended
[2026-02-07 06:04:27] 2026-02-07 05:04:26,407 | INFO     | all workflow threads have been joined
[2026-02-07 06:04:27] 2026-02-07 05:04:26,408 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 06:04:27] 2026-02-07 05:04:26,408 | INFO     | traces error code: 0
[2026-02-07 06:04:27] 2026-02-07 05:04:26,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 06:04:27] 2026-02-07 05:04:26,598 [wrapper] ==== pilot stdout END ====
[2026-02-07 06:04:27] 2026-02-07 05:04:26,608 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 06:04:27] 2026-02-07 05:04:26,617 [wrapper] pilotpid: 3273000
[2026-02-07 06:04:27] 2026-02-07 05:04:26,628 [wrapper] Pilot exit status: 0
[2026-02-07 06:04:27] 2026-02-07 05:04:26,660 [wrapper] pandaids: 7004734096
[2026-02-07 06:04:27] 2026-02-07 05:04:26,781 [wrapper] cleanup supervisor_pilot 3323642 3273001
[2026-02-07 06:04:27] 2026-02-07 05:04:26,791 [wrapper] Test setup, not cleaning
[2026-02-07 06:04:27] 2026-02-07 05:04:26,801 [wrapper] apfmon messages muted
[2026-02-07 06:04:27] 2026-02-07 05:04:26,810 [wrapper] ==== wrapper stdout END ====
[2026-02-07 06:04:27] 2026-02-07 05:04:26,820 [wrapper] ==== wrapper stderr END ====
[2026-02-07 06:04:27]  *** Error codes and diagnostics ***
[2026-02-07 06:04:27]     "exeErrorCode": 0,
[2026-02-07 06:04:27]     "exeErrorDiag": "",
[2026-02-07 06:04:27]     "pilotErrorCode": 0,
[2026-02-07 06:04:27]     "pilotErrorDiag": "",
[2026-02-07 06:04:27]  *** Listing of results directory ***
[2026-02-07 06:04:27] insgesamt 897540
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc      5111 Feb  6 21:57 queuedata.json
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc    584627 Feb  6 21:57 pilot3.tar.gz
[2026-02-07 06:04:27] -rwx------ 1 yeti boinc     36322 Feb  6 21:58 runpilot2-wrapper.sh
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc       100 Feb  7 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 06:04:27] -rwxr-xr-x 1 yeti boinc      7986 Feb  7 03:55 run_atlas
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc       105 Feb  7 03:55 job.xml
[2026-02-07 06:04:27] -rw-r--r-- 2 yeti boinc 652746956 Feb  7 03:55 EVNT.48431078._000200.pool.root.1
[2026-02-07 06:04:27] drwxrwx--x 2 yeti boinc      4096 Feb  7 03:55 shared
[2026-02-07 06:04:27] -rw-r--r-- 2 yeti boinc    597968 Feb  7 03:55 input.tar.gz
[2026-02-07 06:04:27] -rw-r--r-- 2 yeti boinc     15845 Feb  7 03:55 start_atlas.sh
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc      6559 Feb  7 03:55 init_data.xml
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc         0 Feb  7 03:55 boinc_setup_complete
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc         0 Feb  7 03:55 boinc_lockfile
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc      2556 Feb  7 03:55 pandaJob.out
[2026-02-07 06:04:27] -rw------- 1 yeti boinc        52 Feb  7 03:55 setup.sh.local
[2026-02-07 06:04:27] -rw------- 1 yeti boinc   1009520 Feb  7 03:55 agis_schedconf.cvmfs.json
[2026-02-07 06:04:27] -rw------- 1 yeti boinc   1513088 Feb  7 03:55 agis_ddmendpoints.agis.ALL.json
[2026-02-07 06:04:27] -rw------- 1 yeti boinc       422 Feb  7 03:56 workernode_map.json
[2026-02-07 06:04:27] drwx------ 5 yeti boinc      4096 Feb  7 03:56 pilot3
[2026-02-07 06:04:27] -rw------- 1 yeti boinc 259575577 Feb  7 06:02 HITS.48431080._012925.pool.root.1
[2026-02-07 06:04:27] -rw------- 1 yeti boinc        95 Feb  7 06:03 pilot_heartbeat.json
[2026-02-07 06:04:27] -rw------- 1 yeti boinc      1015 Feb  7 06:03 memory_monitor_summary.json
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc       530 Feb  7 06:03 boinc_task_state.xml
[2026-02-07 06:04:27] -rw------- 1 yeti boinc    294935 Feb  7 06:03 log.48431080._012925.job.log.tgz.1
[2026-02-07 06:04:27] -rw------- 1 yeti boinc      6285 Feb  7 06:03 heartbeat.json
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc        27 Feb  7 06:04 wrapper_checkpoint.txt
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc      8192 Feb  7 06:04 boinc_mmap_file
[2026-02-07 06:04:27] -rw------- 1 yeti boinc      4895 Feb  7 06:04 pilotlog.txt
[2026-02-07 06:04:27] -rw------- 1 yeti boinc   1106353 Feb  7 06:04 log.48431080._012925.job.log.1
[2026-02-07 06:04:27] -rw------- 1 yeti boinc       357 Feb  7 06:04 output.list
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc       620 Feb  7 06:04 runtime_log
[2026-02-07 06:04:27] -rw------- 1 yeti boinc   1423360 Feb  7 06:04 result.tar.gz
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc      9546 Feb  7 06:04 runtime_log.err
[2026-02-07 06:04:27] -rw------- 1 yeti boinc       639 Feb  7 06:04 6J8NDms5h88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnkZKDm2Z3Non.diag
[2026-02-07 06:04:27] -rw-r--r-- 1 yeti boinc     20987 Feb  7 06:04 stderr.txt
[2026-02-07 06:04:27] HITS file was successfully produced:
[2026-02-07 06:04:27] -rw------- 1 yeti boinc 259575577 Feb  7 06:02 shared/HITS.pool.root.1
[2026-02-07 06:04:27]  *** Contents of shared directory: ***
[2026-02-07 06:04:27] insgesamt 892944
[2026-02-07 06:04:27] -rw-r--r-- 2 yeti boinc 652746956 Feb  7 03:55 ATLAS.root_0
[2026-02-07 06:04:27] -rw-r--r-- 2 yeti boinc    597968 Feb  7 03:55 input.tar.gz
[2026-02-07 06:04:27] -rw-r--r-- 2 yeti boinc     15845 Feb  7 03:55 start_atlas.sh
[2026-02-07 06:04:27] -rw------- 1 yeti boinc 259575577 Feb  7 06:02 HITS.pool.root.1
[2026-02-07 06:04:27] -rw------- 1 yeti boinc   1423360 Feb  7 06:04 result.tar.gz
06:04:28 (3269071): run_atlas exited; CPU time 29193.963662
06:04:28 (3269071): called boinc_finish(0)

</stderr_txt>
]]>

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