Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:07:59 (2861557): wrapper (7.7.26015): starting
19:07:59 (2861557): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 19:07:59] Arguments: --nthreads 8
[2026-02-06 19:07:59] Threads: 8
[2026-02-06 19:07:59] Checking for CVMFS
[2026-02-06 19:08:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 19:08:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 19:08:00] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 19:08:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 19:08:01] 2.13.3.0 14328 134407 214736 155964 2 727 33375096 40960000 32402 16776704 0 1310524939 99.711 1009243472 50006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-06 19:08:01] CVMFS is ok
[2026-02-06 19:08:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 19:08:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 19:08:01] Further information can be found at the LHC@home message board.
[2026-02-06 19:08:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 19:08:01] Checking for apptainer binary...
[2026-02-06 19:08:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 19:08:01] Running /usr/bin/apptainer --version
[2026-02-06 19:08:02] apptainer version 1.4.5-2.el9
[2026-02-06 19:08:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 19:08:02] c8-16-2.aglt2.org
[2026-02-06 19:08:02] apptainer works
[2026-02-06 19:08:03] Set ATHENA_PROC_NUMBER=8
[2026-02-06 19:08:03] Set ATHENA_CORE_NUMBER=8
[2026-02-06 19:08:03] Starting ATLAS job with PandaID=6998368097
[2026-02-06 19:08:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:06 (2861557): BOINC client no longer exists - exiting
19:20:06 (2861557): timer handler: client dead, exiting
19:28:37 (3012216): wrapper (7.7.26015): starting
19:28:37 (3012216): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 19:28:37] Arguments: --nthreads 8
[2026-02-06 19:28:37] Threads: 8
[2026-02-06 19:28:37] This job has been restarted, cleaning up previous attempt
[2026-02-06 19:28:37] Checking for CVMFS
[2026-02-06 19:28:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 19:28:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 19:28:37] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 19:28:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 19:28:38] 2.13.3.0 14328 134428 213892 155965 1 897 34033286 40960000 27678 16776704 0 1310773424 99.711 1009404119 50004 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-06 19:28:38] CVMFS is ok
[2026-02-06 19:28:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 19:28:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 19:28:38] Further information can be found at the LHC@home message board.
[2026-02-06 19:28:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 19:28:38] Checking for apptainer binary...
[2026-02-06 19:28:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 19:28:38] Running /usr/bin/apptainer --version
[2026-02-06 19:28:38] apptainer version 1.4.5-2.el9
[2026-02-06 19:28:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 19:28:38] c8-16-2.aglt2.org
[2026-02-06 19:28:38] apptainer works
[2026-02-06 19:28:38] Set ATHENA_PROC_NUMBER=8
[2026-02-06 19:28:38] Set ATHENA_CORE_NUMBER=8
[2026-02-06 19:28:38] Starting ATLAS job with PandaID=6998368097
[2026-02-06 19:28:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 21:16:10]  *** The last 200 lines of the pilot log: ***
[2026-02-06 21:16:10] 2026-02-07 02:15:35,877 | INFO     | log transfer has been attempted: DONE
[2026-02-06 21:16:10] 2026-02-07 02:15:35,877 | INFO     | job 6998368097 has finished - writing final server update
[2026-02-06 21:16:10] 2026-02-07 02:15:35,877 | INFO     | total number of processed events: 400 (read)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,890 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6998368097/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,891 | INFO     | extracted standard info from prmon json
[2026-02-06 21:16:10] 2026-02-07 02:15:35,891 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 21:16:10] 2026-02-07 02:15:35,891 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 21:16:10] 2026-02-07 02:15:35,921 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 21:16:10] 2026-02-07 02:15:35,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 21:16:10] 2026-02-07 02:15:35,923 | INFO     | fitting pss+swap vs Time
[2026-02-06 21:16:10] 2026-02-07 02:15:35,923 | INFO     | sum of square deviations: 358933395.9619045
[2026-02-06 21:16:10] 2026-02-07 02:15:35,923 | INFO     | sum of deviations: -1172569011.714283
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | mean x: 1770427329.0190477
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | mean y: 2483354.8571428573
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | intersect: 5786141957.970668
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | chi2: 2.7813530458221187
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | sum of square deviations: 310058670.9600007
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | sum of deviations: 12289370041.6
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | mean x: 1770427176.52
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | mean y: 2524119.2
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | intersect: -70169468286.60567
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | chi2: 1.230976509093696
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | current chi2=1.230976509093696 (change=55.74181023359295 %)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,924 | INFO     | sum of square deviations: 265835195.9578947
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | sum of deviations: 11691025477.715784
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | mean x: 1770427024.0210526
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | mean y: 2522053.642105263
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | intersect: -77858151623.0858
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | chi2: 1.2326345510064345
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | current chi2=1.2326345510064345 (change=-0.1346932212345206 %)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | right removable region: 94
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | sum of square deviations: 310057450.9600007
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | sum of deviations: -14940999062.32
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | mean x: 1770427481.52
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | mean y: 2525430.91
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | intersect: 85315602924.75917
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | chi2: 1.6125815772414498
[2026-02-06 21:16:10] 2026-02-07 02:15:35,925 | INFO     | current chi2=1.6125815772414498 (change=42.021686902936864 %)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | sum of square deviations: 265832755.9578947
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | sum of deviations: -14755910499.62105
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | mean x: 1770427634.0210526
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | mean y: 2524752.8105263156
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | intersect: 98275860630.98323
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | chi2: 1.6138452049971495
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | current chi2=1.6138452049971495 (change=-0.07836054767916138 %)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | left removable region: 20
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | sum of square deviations: 125634900.44594589
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | sum of deviations: -1458319638.6351328
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | mean x: 1770427603.5270271
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | mean y: 2571195.0675675673
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | intersect: 20552986197.911724
[2026-02-06 21:16:10] 2026-02-07 02:15:35,926 | INFO     | chi2: 0.0021305298803022932
[2026-02-06 21:16:10] 2026-02-07 02:15:35,927 | INFO     | current memory leak: -11.61 B/s (using 74 data points, chi2=0.00)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,927 | INFO     | could have reported an average CPU frequency of 3768 MHz (7 samples)
[2026-02-06 21:16:10] 2026-02-07 02:15:35,927 | INFO     | ..............................
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . Timing measurements:
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . get job = 0 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . initial setup = 0 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . payload setup = 7 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . stage-in = 0 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . payload execution = 6377 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . stage-out = 2 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | . log creation = 0 s
[2026-02-06 21:16:10] 2026-02-07 02:15:35,928 | INFO     | ..............................
[2026-02-06 21:16:10] 2026-02-07 02:15:36,014 | INFO     | 
[2026-02-06 21:16:10] 2026-02-07 02:15:36,014 | INFO     | job summary report
[2026-02-06 21:16:10] 2026-02-07 02:15:36,014 | INFO     | --------------------------------------------------
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | PanDA job id: 6998368097
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | task id: 48508763
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | errors: (none)
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | pilot state: finished 
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | transexitcode: 0
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | exeerrorcode: 0
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | exeerrordiag: 
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | exitcode: 0
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | exitmsg: OK
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | cpuconsumptiontime: 34889 s
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | nevents: 400
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | neventsw: 0
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | pid: 3054892
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | pgrp: 3054892
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | corecount: 8
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | event service: False
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | sizes: {0: 2282681, 1: 2283142, 11: 2283142, 6389: 2310241, 6392: 2319239, 6395: 2319295, 6396: 2319617}
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | --------------------------------------------------
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | 
[2026-02-06 21:16:10] 2026-02-07 02:15:36,015 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-02-06 21:16:10] 2026-02-07 02:15:36,050 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,050 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,050 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,050 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | job 6998368097 has completed (purged errors)
[2026-02-06 21:16:10] 2026-02-07 02:15:36,051 | INFO     | overall cleanup function is called
[2026-02-06 21:16:10] 2026-02-07 02:15:37,060 | INFO     | --- collectZombieJob: --- 10, [3054892]
[2026-02-06 21:16:10] 2026-02-07 02:15:37,060 | INFO     | zombie collector waiting for pid 3054892
[2026-02-06 21:16:10] 2026-02-07 02:15:37,060 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 21:16:10] 2026-02-07 02:15:37,060 | INFO     | collected zombie processes
[2026-02-06 21:16:10] 2026-02-07 02:15:37,061 | INFO     | will attempt to kill all subprocesses of pid=3054892
[2026-02-06 21:16:10] 2026-02-07 02:15:38,777 | INFO     | process IDs to be killed: [3054892] (in reverse order)
[2026-02-06 21:16:10] 2026-02-07 02:15:39,230 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 21:16:10] 2026-02-07 02:15:39,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 21:16:10] 2026-02-07 02:15:39,264 | INFO     | did not find any defunct processes belonging to 3054892
[2026-02-06 21:16:10] 2026-02-07 02:15:39,287 | INFO     | did not find any defunct processes belonging to 3054892
[2026-02-06 21:16:10] 2026-02-07 02:15:39,287 | INFO     | ready for new job
[2026-02-06 21:16:10] 2026-02-07 02:15:39,287 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 21:16:10] 2026-02-07 02:15:39,308 | INFO     | **************************************
[2026-02-06 21:16:10] 2026-02-07 02:15:39,309 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 21:16:10] 2026-02-07 02:15:39,309 | INFO     | **************************************
[2026-02-06 21:16:10] 2026-02-07 02:15:39,309 | INFO     | 
[2026-02-06 21:16:10] 2026-02-07 02:15:39,321 | INFO     | architecture information:
[2026-02-06 21:16:10] 2026-02-07 02:15:39,386 | INFO     | executing command: cat /etc/os-release
[2026-02-06 21:16:10] 2026-02-07 02:15:39,750 | INFO     | cat /etc/os-release:
[2026-02-06 21:16:10] NAME="CentOS Linux"
[2026-02-06 21:16:10] VERSION="7 (Core)"
[2026-02-06 21:16:10] ID="centos"
[2026-02-06 21:16:10] ID_LIKE="rhel fedora"
[2026-02-06 21:16:10] VERSION_ID="7"
[2026-02-06 21:16:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 21:16:10] ANSI_COLOR="0;31"
[2026-02-06 21:16:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 21:16:10] HOME_URL="https://www.centos.org/"
[2026-02-06 21:16:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 21:16:10] 
[2026-02-06 21:16:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 21:16:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 21:16:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 21:16:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 21:16:10] 
[2026-02-06 21:16:10] 2026-02-07 02:15:39,751 | INFO     | **************************************
[2026-02-06 21:16:10] 2026-02-07 02:15:40,255 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-02-06 21:16:10] 2026-02-07 02:15:40,373 | INFO     | sufficient remaining disk space (160154255360 B)
[2026-02-06 21:16:10] 2026-02-07 02:15:40,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 21:16:10] 2026-02-07 02:15:40,374 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 21:16:10] 2026-02-07 02:15:40,374 | INFO     | update_server=False
[2026-02-06 21:16:10] 2026-02-07 02:15:40,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 21:16:10] 2026-02-07 02:15:40,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 21:16:10] 2026-02-07 02:15:40,615 | INFO     | all data control threads have been joined
[2026-02-06 21:16:10] 2026-02-07 02:15:40,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 21:16:10] 2026-02-07 02:15:40,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 21:16:10] 2026-02-07 02:15:41,087 | INFO     | all job control threads have been joined
[2026-02-06 21:16:10] 2026-02-07 02:15:41,137 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 21:16:10] 2026-02-07 02:15:41,137 | INFO     | aborting loop
[2026-02-06 21:16:10] 2026-02-07 02:15:41,262 | INFO     | all payload control threads have been joined
[2026-02-06 21:16:10] 2026-02-07 02:15:41,379 | INFO     | [job] retrieve thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:41,435 | INFO     | [data] copytool_in thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:41,462 | INFO     | [job] validate thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:41,533 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:41,572 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:41,621 | INFO     | [data] control thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,000 | INFO     | [job] queue monitor thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,093 | INFO     | [job] control thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,143 | INFO     | [job] job monitor thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,268 | INFO     | [payload] control thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,381 | INFO     | [data] copytool_out thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,671 | INFO     | [payload] failed_post thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,693 | INFO     | [payload] validate_post thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:42,857 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:44,968 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:50,786 | INFO     | job.realtimelogging is not enabled
[2026-02-06 21:16:10] 2026-02-07 02:15:51,792 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 21:16:10] 2026-02-07 02:15:59,561 | INFO     | [monitor] cgroup control has ended
[2026-02-06 21:16:10] 2026-02-07 02:15:59,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757272758080)>', '<ExcThread(monitor, started 139756792952576)>']
[2026-02-06 21:16:10] 2026-02-07 02:16:04,803 | INFO     | all workflow threads have been joined
[2026-02-06 21:16:10] 2026-02-07 02:16:04,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 21:16:10] 2026-02-07 02:16:04,803 | INFO     | traces error code: 0
[2026-02-06 21:16:10] 2026-02-07 02:16:04,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 21:16:10] 2026-02-07 02:16:08,168 | INFO     | PID=3034737 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 21:16:10] 2026-02-07 02:16:08,168 | INFO     | .. there are 34 such processes running
[2026-02-06 21:16:10] 2026-02-07 02:16:08,169 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 21:16:10] 2026-02-07 02:16:08,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 21:16:10] 2026-02-07 02:16:08,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 21:16:10] 2026-02-07 02:16:08,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 21:16:10] 2026-02-07 02:16:08,169 | INFO     | [monitor] control thread has ended
[2026-02-06 21:16:10] 2026-02-07 02:16:08,560 [wrapper] ==== pilot stdout END ====
[2026-02-06 21:16:10] 2026-02-07 02:16:08,589 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 21:16:10] 2026-02-07 02:16:08,617 [wrapper] pilotpid: 3034737
[2026-02-06 21:16:10] 2026-02-07 02:16:08,647 [wrapper] Pilot exit status: 0
[2026-02-06 21:16:10] 2026-02-07 02:16:08,814 [wrapper] pandaids: 6998368097 6998368097
[2026-02-06 21:16:10] 2026-02-07 02:16:09,076 [wrapper] cleanup supervisor_pilot 3706864 3034738
[2026-02-06 21:16:10] 2026-02-07 02:16:09,099 [wrapper] Test setup, not cleaning
[2026-02-06 21:16:10] 2026-02-07 02:16:09,126 [wrapper] apfmon messages muted
[2026-02-06 21:16:10] 2026-02-07 02:16:09,166 [wrapper] ==== wrapper stdout END ====
[2026-02-06 21:16:10] 2026-02-07 02:16:09,203 [wrapper] ==== wrapper stderr END ====
[2026-02-06 21:16:10]  *** Error codes and diagnostics ***
[2026-02-06 21:16:10]     "exeErrorCode": 0,
[2026-02-06 21:16:10]     "exeErrorDiag": "",
[2026-02-06 21:16:10]     "pilotErrorCode": 0,
[2026-02-06 21:16:10]     "pilotErrorDiag": "",
[2026-02-06 21:16:10]  *** Listing of results directory ***
[2026-02-06 21:16:10] total 1611784
[2026-02-06 21:16:10] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas    584627 Feb  6 13:42 pilot3.tar.gz
[2026-02-06 21:16:10] -rwx------. 1 boincer umatlas     36322 Feb  6 13:42 runpilot2-wrapper.sh
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas      5111 Feb  6 13:43 queuedata.json
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas       100 Feb  6 19:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 21:16:10] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  6 19:07 run_atlas
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas       105 Feb  6 19:07 job.xml
[2026-02-06 21:16:10] -rw-r--r--. 3 boincer umatlas 681610080 Feb  6 19:07 EVNT.48508760._000004.pool.root.1
[2026-02-06 21:16:10] -rw-r--r--. 3 boincer umatlas 681610080 Feb  6 19:07 ATLAS.root_0
[2026-02-06 21:16:10] drwxrwx--x. 2 boincer umatlas      4096 Feb  6 19:07 shared
[2026-02-06 21:16:10] -rw-r--r--. 2 boincer umatlas    597940 Feb  6 19:07 input.tar.gz
[2026-02-06 21:16:10] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 19:07 start_atlas.sh
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas         0 Feb  6 19:07 boinc_lockfile
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas   1513088 Feb  6 19:09 agis_ddmendpoints.agis.ALL.json
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas      2542 Feb  6 19:28 pandaJob.out
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas        57 Feb  6 19:28 setup.sh.local
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas   1009520 Feb  6 19:28 agis_schedconf.cvmfs.json
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas       430 Feb  6 19:28 workernode_map.json
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas      7172 Feb  6 21:12 init_data.xml
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas 280778324 Feb  6 21:13 HITS.48508763._000096.pool.root.1
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas       530 Feb  6 21:13 boinc_task_state.xml
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas      1051 Feb  6 21:15 memory_monitor_summary.json
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas    385336 Feb  6 21:15 log.48508763._000096.job.log.tgz.1
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas      6351 Feb  6 21:15 heartbeat.json
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas      8192 Feb  6 21:16 boinc_mmap_file
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas        27 Feb  6 21:16 wrapper_checkpoint.txt
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas        96 Feb  6 21:16 pilot_heartbeat.json
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas       823 Feb  6 21:16 pilotlog.txt
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas    872423 Feb  6 21:16 log.48508763._000096.job.log.1
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas       357 Feb  6 21:16 output.list
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas       620 Feb  6 21:16 runtime_log
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas   1280000 Feb  6 21:16 result.tar.gz
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas      9421 Feb  6 21:16 runtime_log.err
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas       781 Feb  6 21:16 GApLDm7xf88n9Rq4apOajLDm4fhM0noT9bVooX4SDmXCZKDmupZs1m.diag
[2026-02-06 21:16:10] -rw-r--r--. 1 boincer umatlas     23360 Feb  6 21:16 stderr.txt
[2026-02-06 21:16:10] HITS file was successfully produced:
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas 280778324 Feb  6 21:13 shared/HITS.pool.root.1
[2026-02-06 21:16:10]  *** Contents of shared directory: ***
[2026-02-06 21:16:10] total 941696
[2026-02-06 21:16:10] -rw-r--r--. 3 boincer umatlas 681610080 Feb  6 19:07 ATLAS.root_0
[2026-02-06 21:16:10] -rw-r--r--. 2 boincer umatlas    597940 Feb  6 19:07 input.tar.gz
[2026-02-06 21:16:10] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 19:07 start_atlas.sh
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas 280778324 Feb  6 21:13 HITS.pool.root.1
[2026-02-06 21:16:10] -rw-------. 1 boincer umatlas   1280000 Feb  6 21:16 result.tar.gz
21:16:11 (3012216): run_atlas exited; CPU time 35092.214681
21:16:11 (3012216): called boinc_finish(0)

</stderr_txt>
]]>

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