Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:21:07 (932005): wrapper (7.7.26015): starting
21:21:07 (932005): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 21:21:07] Arguments: --nthreads 8
[2026-02-06 21:21:07] Threads: 8
[2026-02-06 21:21:07] Checking for CVMFS
[2026-02-06 21:21:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 21:21:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 21:21:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 21:21:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 21:21:09] 2.13.3.0 7069 64695 363396 155967 2 91 28239535 40960000 14290 16776704 0 126190161 99.665 177184938 35059 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-06 21:21:09] CVMFS is ok
[2026-02-06 21:21:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 21:21:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 21:21:09] Further information can be found at the LHC@home message board.
[2026-02-06 21:21:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 21:21:09] Checking for apptainer binary...
[2026-02-06 21:21:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 21:21:09] Running /usr/bin/apptainer --version
[2026-02-06 21:21:09] apptainer version 1.4.5-2.el9
[2026-02-06 21:21:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 21:21:10] c-210-35-3.aglt2.org
[2026-02-06 21:21:10] apptainer works
[2026-02-06 21:21:10] Set ATHENA_PROC_NUMBER=8
[2026-02-06 21:21:10] Set ATHENA_CORE_NUMBER=8
[2026-02-06 21:21:10] Starting ATLAS job with PandaID=7004058054
[2026-02-06 21:21:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 05:16:29]  *** The last 200 lines of the pilot log: ***
[2026-02-07 05:16:29] 2026-02-07 10:15:46,488 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-7004058054/jobReport.json
[2026-02-07 05:16:29] 2026-02-07 10:15:46,498 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-02-07 05:16:29] 2026-02-07 10:15:46,499 | INFO     | this job has now completed (state=finished)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,499 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,499 | INFO     | log transfer has been attempted: DONE
[2026-02-07 05:16:29] 2026-02-07 10:15:46,499 | INFO     | job 7004058054 has finished - writing final server update
[2026-02-07 05:16:29] 2026-02-07 10:15:46,500 | INFO     | total number of processed events: 400 (read)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,529 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7004058054/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,530 | INFO     | extracted standard info from prmon json
[2026-02-07 05:16:29] 2026-02-07 10:15:46,530 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 05:16:29] 2026-02-07 10:15:46,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 05:16:29] 2026-02-07 10:15:46,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 05:16:29] 2026-02-07 10:15:46,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 05:16:29] 2026-02-07 10:15:46,562 | INFO     | fitting pss+swap vs Time
[2026-02-07 05:16:29] 2026-02-07 10:15:46,582 | INFO     | sum of square deviations: 31177631809.600075
[2026-02-07 05:16:29] 2026-02-07 10:15:46,593 | INFO     | sum of deviations: 7621803680.799969
[2026-02-07 05:16:29] 2026-02-07 10:15:46,593 | INFO     | mean x: 1770445179.4
[2026-02-07 05:16:29] 2026-02-07 10:15:46,593 | INFO     | mean y: 2578778.458064516
[2026-02-07 05:16:29] 2026-02-07 10:15:46,594 | INFO     | intersect: -430231053.5205938
[2026-02-07 05:16:29] 2026-02-07 10:15:46,594 | INFO     | chi2: 3.200891746320348
[2026-02-07 05:16:29] 2026-02-07 10:15:46,595 | INFO     | sum of square deviations: 30182748953.79123
[2026-02-07 05:16:29] 2026-02-07 10:15:46,601 | INFO     | sum of deviations: 37482980039.33046
[2026-02-07 05:16:29] 2026-02-07 10:15:46,602 | INFO     | mean x: 1770445026.904348
[2026-02-07 05:16:29] 2026-02-07 10:15:46,602 | INFO     | mean y: 2583315.4847826087
[2026-02-07 05:16:29] 2026-02-07 10:15:46,602 | INFO     | intersect: -2196075120.3583164
[2026-02-07 05:16:29] 2026-02-07 10:15:46,603 | INFO     | chi2: 2.524056320043979
[2026-02-07 05:16:29] 2026-02-07 10:15:46,603 | INFO     | current chi2=2.524056320043979 (change=21.145214518873974 %)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,603 | INFO     | right removable region: 459
[2026-02-07 05:16:29] 2026-02-07 10:15:46,604 | INFO     | sum of square deviations: 30182635493.791176
[2026-02-07 05:16:29] 2026-02-07 10:15:46,613 | INFO     | PID=936215 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 05:16:29] 2026-02-07 10:15:46,613 | INFO     | .. there are 18 such processes running
[2026-02-07 05:16:29] 2026-02-07 10:15:46,614 | INFO     | sum of deviations: -102416373544.33908
[2026-02-07 05:16:29] 2026-02-07 10:15:46,614 | INFO     | mean x: 1770445331.904348
[2026-02-07 05:16:29] 2026-02-07 10:15:46,614 | INFO     | mean y: 2595596.9695652174
[2026-02-07 05:16:29] 2026-02-07 10:15:46,614 | INFO     | intersect: 6010109105.504851
[2026-02-07 05:16:29] 2026-02-07 10:15:46,615 | INFO     | chi2: 0.933239656562127
[2026-02-07 05:16:29] 2026-02-07 10:15:46,615 | INFO     | current chi2=0.933239656562127 (change=70.84438554865369 %)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,616 | INFO     | sum of square deviations: 29209063109.779995
[2026-02-07 05:16:29] 2026-02-07 10:15:46,622 | INFO     | sum of deviations: -115895487459.67041
[2026-02-07 05:16:29] 2026-02-07 10:15:46,622 | INFO     | mean x: 1770445484.4065933
[2026-02-07 05:16:29] 2026-02-07 10:15:46,622 | INFO     | mean y: 2597697.69010989
[2026-02-07 05:16:29] 2026-02-07 10:15:46,622 | INFO     | intersect: 7027357158.9880085
[2026-02-07 05:16:29] 2026-02-07 10:15:46,623 | INFO     | chi2: 0.8731837907675762
[2026-02-07 05:16:29] 2026-02-07 10:15:46,624 | INFO     | current chi2=0.8731837907675762 (change=6.435202937666077 %)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,624 | INFO     | left removable region: 20
[2026-02-07 05:16:29] 2026-02-07 10:15:46,624 | INFO     | sum of square deviations: 26234776184.879307
[2026-02-07 05:16:29] 2026-02-07 10:15:46,630 | INFO     | sum of deviations: -47009411826.73577
[2026-02-07 05:16:29] 2026-02-07 10:15:46,630 | INFO     | mean x: 1770445606.4191344
[2026-02-07 05:16:29] 2026-02-07 10:15:46,630 | INFO     | mean y: 2596189.063781321
[2026-02-07 05:16:29] 2026-02-07 10:15:46,631 | INFO     | intersect: 3175011537.3967757
[2026-02-07 05:16:29] 2026-02-07 10:15:46,631 | INFO     | chi2: 0.0765390306454862
[2026-02-07 05:16:29] 2026-02-07 10:15:46,632 | INFO     | current memory leak: -1.79 B/s (using 439 data points, chi2=0.08)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,632 | INFO     | could have reported an average CPU frequency of 2807 MHz (19 samples)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | ..............................
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . Timing measurements:
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . get job = 0 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . initial setup = 29 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . payload setup = 34 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . stage-in = 0 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . payload execution = 28335 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . stage-out = 3 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,633 | INFO     | . log creation = 0 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,634 | INFO     | ..............................
[2026-02-07 05:16:29] 2026-02-07 10:15:46,855 | INFO     | 
[2026-02-07 05:16:29] 2026-02-07 10:15:46,858 | INFO     | job summary report
[2026-02-07 05:16:29] 2026-02-07 10:15:46,858 | INFO     | --------------------------------------------------
[2026-02-07 05:16:29] 2026-02-07 10:15:46,858 | INFO     | PanDA job id: 7004058054
[2026-02-07 05:16:29] 2026-02-07 10:15:46,858 | INFO     | task id: 48431096
[2026-02-07 05:16:29] 2026-02-07 10:15:46,858 | INFO     | errors: (none)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,861 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | pilot state: finished 
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | transexitcode: 0
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | exeerrorcode: 0
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | exeerrordiag: 
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | exitcode: 0
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | exitmsg: OK
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | cpuconsumptiontime: 65461 s
[2026-02-07 05:16:29] 2026-02-07 10:15:46,862 | INFO     | nevents: 400
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | neventsw: 0
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | pid: 941256
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | pgrp: 941256
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | corecount: 8
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | event service: False
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | sizes: {0: 2282591, 1: 2282675, 2: 2283136, 13: 2283136, 28374: 2320270, 28375: 2320269, 28379: 2329863, 28381: 2330113}
[2026-02-07 05:16:29] 2026-02-07 10:15:46,864 | INFO     | --------------------------------------------------
[2026-02-07 05:16:29] 2026-02-07 10:15:46,865 | INFO     | 
[2026-02-07 05:16:29] 2026-02-07 10:15:46,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-07 05:16:29] 2026-02-07 10:15:46,900 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | job 7004058054 has completed (purged errors)
[2026-02-07 05:16:29] 2026-02-07 10:15:46,902 | INFO     | overall cleanup function is called
[2026-02-07 05:16:29] 2026-02-07 10:15:47,911 | INFO     | --- collectZombieJob: --- 10, [941256]
[2026-02-07 05:16:29] 2026-02-07 10:15:47,911 | INFO     | zombie collector waiting for pid 941256
[2026-02-07 05:16:29] 2026-02-07 10:15:47,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 05:16:29] 2026-02-07 10:15:47,912 | INFO     | collected zombie processes
[2026-02-07 05:16:29] 2026-02-07 10:15:47,912 | INFO     | will attempt to kill all subprocesses of pid=941256
[2026-02-07 05:16:29] 2026-02-07 10:15:48,518 | INFO     | process IDs to be killed: [941256] (in reverse order)
[2026-02-07 05:16:29] 2026-02-07 10:15:48,780 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 05:16:29] 2026-02-07 10:15:48,781 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 05:16:29] 2026-02-07 10:15:48,795 | INFO     | did not find any defunct processes belonging to 941256
[2026-02-07 05:16:29] 2026-02-07 10:15:48,806 | INFO     | did not find any defunct processes belonging to 941256
[2026-02-07 05:16:29] 2026-02-07 10:15:48,806 | INFO     | ready for new job
[2026-02-07 05:16:29] 2026-02-07 10:15:48,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 05:16:29] 2026-02-07 10:15:48,809 | INFO     | **************************************
[2026-02-07 05:16:29] 2026-02-07 10:15:48,809 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 05:16:29] 2026-02-07 10:15:48,809 | INFO     | **************************************
[2026-02-07 05:16:29] 2026-02-07 10:15:48,809 | INFO     | 
[2026-02-07 05:16:29] 2026-02-07 10:15:48,813 | INFO     | architecture information:
[2026-02-07 05:16:29] 2026-02-07 10:15:48,825 | INFO     | executing command: cat /etc/os-release
[2026-02-07 05:16:29] 2026-02-07 10:15:48,907 | INFO     | cat /etc/os-release:
[2026-02-07 05:16:29] NAME="CentOS Linux"
[2026-02-07 05:16:29] VERSION="7 (Core)"
[2026-02-07 05:16:29] ID="centos"
[2026-02-07 05:16:29] ID_LIKE="rhel fedora"
[2026-02-07 05:16:29] VERSION_ID="7"
[2026-02-07 05:16:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 05:16:29] ANSI_COLOR="0;31"
[2026-02-07 05:16:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 05:16:29] HOME_URL="https://www.centos.org/"
[2026-02-07 05:16:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 05:16:29] 
[2026-02-07 05:16:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 05:16:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 05:16:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 05:16:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 05:16:29] 
[2026-02-07 05:16:29] 2026-02-07 10:15:48,908 | INFO     | **************************************
[2026-02-07 05:16:29] 2026-02-07 10:15:49,416 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-07 05:16:29] 2026-02-07 10:15:49,496 | INFO     | sufficient remaining disk space (69497520128 B)
[2026-02-07 05:16:29] 2026-02-07 10:15:49,497 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 05:16:29] 2026-02-07 10:15:49,497 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 05:16:29] 2026-02-07 10:15:49,497 | INFO     | update_server=False
[2026-02-07 05:16:29] 2026-02-07 10:15:49,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 05:16:29] 2026-02-07 10:15:49,551 | INFO     | all payload control threads have been joined
[2026-02-07 05:16:29] 2026-02-07 10:15:49,687 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 05:16:29] 2026-02-07 10:15:49,687 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 05:16:29] 2026-02-07 10:15:49,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 05:16:29] 2026-02-07 10:15:49,687 | INFO     | will abort loop
[2026-02-07 05:16:29] 2026-02-07 10:15:49,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 05:16:29] 2026-02-07 10:15:50,503 | INFO     | [job] retrieve thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,557 | INFO     | [payload] control thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,565 | INFO     | all data control threads have been joined
[2026-02-07 05:16:29] 2026-02-07 10:15:50,693 | INFO     | [job] job monitor thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,810 | INFO     | [payload] validate_post thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,838 | INFO     | [job] validate thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,846 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,899 | INFO     | [payload] failed_post thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:50,969 | INFO     | all job control threads have been joined
[2026-02-07 05:16:29] 2026-02-07 10:15:51,200 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:51,201 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:51,293 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:51,571 | INFO     | [data] control thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:51,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 05:16:29] 2026-02-07 10:15:51,840 | INFO     | [data] copytool_in thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:51,923 | INFO     | [data] copytool_out thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:51,975 | INFO     | [job] control thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:52,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 05:16:29] 2026-02-07 10:15:52,756 | INFO     | [job] queue monitor thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:15:56,560 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 05:16:29] 2026-02-07 10:16:19,380 | INFO     | PID=936215 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-07 05:16:29] 2026-02-07 10:16:19,381 | INFO     | .. there are 18 such processes running
[2026-02-07 05:16:29] 2026-02-07 10:16:19,382 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 05:16:29] 2026-02-07 10:16:19,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 05:16:29] 2026-02-07 10:16:19,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 05:16:29] 2026-02-07 10:16:22,361 | INFO     | [monitor] cgroup control has ended
[2026-02-07 05:16:29] 2026-02-07 10:16:22,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800546424640)>', '<ExcThread(monitor, started 139800094955264)>']
[2026-02-07 05:16:29] 2026-02-07 10:16:23,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 05:16:29] 2026-02-07 10:16:23,406 | INFO     | [monitor] control thread has ended
[2026-02-07 05:16:29] 2026-02-07 10:16:27,655 | INFO     | all workflow threads have been joined
[2026-02-07 05:16:29] 2026-02-07 10:16:27,655 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 05:16:29] 2026-02-07 10:16:27,655 | INFO     | traces error code: 0
[2026-02-07 05:16:29] 2026-02-07 10:16:27,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 05:16:29] 2026-02-07 10:16:28,608 [wrapper] ==== pilot stdout END ====
[2026-02-07 05:16:29] 2026-02-07 10:16:28,623 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 05:16:29] 2026-02-07 10:16:28,636 [wrapper] pilotpid: 936215
[2026-02-07 05:16:29] 2026-02-07 10:16:28,640 [wrapper] Pilot exit status: 0
[2026-02-07 05:16:29] 2026-02-07 10:16:28,664 [wrapper] pandaids: 7004058054
[2026-02-07 05:16:29] 2026-02-07 10:16:28,789 [wrapper] cleanup supervisor_pilot 1993137 936216
[2026-02-07 05:16:29] 2026-02-07 10:16:28,836 [wrapper] Test setup, not cleaning
[2026-02-07 05:16:29] 2026-02-07 10:16:28,863 [wrapper] apfmon messages muted
[2026-02-07 05:16:29] 2026-02-07 10:16:28,893 [wrapper] ==== wrapper stdout END ====
[2026-02-07 05:16:29] 2026-02-07 10:16:28,919 [wrapper] ==== wrapper stderr END ====
[2026-02-07 05:16:29]  *** Error codes and diagnostics ***
[2026-02-07 05:16:29]     "exeErrorCode": 0,
[2026-02-07 05:16:29]     "exeErrorDiag": "",
[2026-02-07 05:16:29]     "pilotErrorCode": 0,
[2026-02-07 05:16:29]     "pilotErrorDiag": "",
[2026-02-07 05:16:29]  *** Listing of results directory ***
[2026-02-07 05:16:29] total 955380
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas    584627 Feb  6 11:59 pilot3.tar.gz
[2026-02-07 05:16:29] -rwx------. 1 boincer umatlas     36322 Feb  6 12:00 runpilot2-wrapper.sh
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas      5111 Feb  6 12:00 queuedata.json
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas       100 Feb  6 21:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 05:16:29] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  6 21:21 run_atlas
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas       105 Feb  6 21:21 job.xml
[2026-02-07 05:16:29] -rw-r--r--. 2 boincer umatlas 684213191 Feb  6 21:21 EVNT.48431094._000280.pool.root.1
[2026-02-07 05:16:29] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 21:21 start_atlas.sh
[2026-02-07 05:16:29] drwxrwx--x. 2 boincer umatlas      4096 Feb  6 21:21 shared
[2026-02-07 05:16:29] -rw-r--r--. 2 boincer umatlas    597948 Feb  6 21:21 input.tar.gz
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas         0 Feb  6 21:21 boinc_lockfile
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas      2553 Feb  6 21:21 pandaJob.out
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas        57 Feb  6 21:21 setup.sh.local
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas   1009520 Feb  6 21:22 agis_schedconf.cvmfs.json
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas       443 Feb  6 21:22 workernode_map.json
[2026-02-07 05:16:29] drwx------. 5 boincer umatlas      4096 Feb  6 21:22 pilot3
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas      6842 Feb  7 05:10 init_data.xml
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas 281701754 Feb  7 05:14 HITS.48431096._006548.pool.root.1
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas       532 Feb  7 05:14 boinc_task_state.xml
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas      1045 Feb  7 05:15 memory_monitor_summary.json
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas   1513088 Feb  7 05:15 agis_ddmendpoints.agis.ALL.json
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas    632915 Feb  7 05:15 log.48431096._006548.job.log.tgz.1
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas      6398 Feb  7 05:15 heartbeat.json
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas        95 Feb  7 05:16 pilot_heartbeat.json
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas        28 Feb  7 05:16 wrapper_checkpoint.txt
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas      8192 Feb  7 05:16 boinc_mmap_file
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas      5005 Feb  7 05:16 pilotlog.txt
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas   3593701 Feb  7 05:16 log.48431096._006548.job.log.1
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas       357 Feb  7 05:16 output.list
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas       620 Feb  7 05:16 runtime_log
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas   4239360 Feb  7 05:16 result.tar.gz
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas      9352 Feb  7 05:16 runtime_log.err
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas       659 Feb  7 05:16 17oKDmqMe88n9Rq4apOajLDm4fhM0noT9bVooX4SDmM0YKDmQ1XJin.diag
[2026-02-07 05:16:29] -rw-r--r--. 1 boincer umatlas     21411 Feb  7 05:16 stderr.txt
[2026-02-07 05:16:29] HITS file was successfully produced:
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas 281701754 Feb  7 05:14 shared/HITS.pool.root.1
[2026-02-07 05:16:29]  *** Contents of shared directory: ***
[2026-02-07 05:16:29] total 948028
[2026-02-07 05:16:29] -rw-r--r--. 2 boincer umatlas 684213191 Feb  6 21:21 ATLAS.root_0
[2026-02-07 05:16:29] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 21:21 start_atlas.sh
[2026-02-07 05:16:29] -rw-r--r--. 2 boincer umatlas    597948 Feb  6 21:21 input.tar.gz
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas 281701754 Feb  7 05:14 HITS.pool.root.1
[2026-02-07 05:16:29] -rw-------. 1 boincer umatlas   4239360 Feb  7 05:16 result.tar.gz
05:16:30 (932005): run_atlas exited; CPU time 66545.943663
05:16:30 (932005): called boinc_finish(0)

</stderr_txt>
]]>

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