Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:30:23 (328777): wrapper (7.7.26015): starting
17:30:23 (328777): wrapper: running run_atlas (--nthreads 8)
[2026-02-06 17:30:23] Arguments: --nthreads 8
[2026-02-06 17:30:23] Threads: 8
[2026-02-06 17:30:23] Checking for CVMFS
[2026-02-06 17:30:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 17:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 17:30:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 17:30:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 17:30:25] 2.13.3.0 11460 134333 248556 155962 3 177 26837194 32935937 25319 16776704 0 970947357 99.626 932361665 36050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-06 17:30:25] CVMFS is ok
[2026-02-06 17:30:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 17:30:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 17:30:25] Further information can be found at the LHC@home message board.
[2026-02-06 17:30:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 17:30:25] Checking for apptainer binary...
[2026-02-06 17:30:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 17:30:25] Running /usr/bin/apptainer --version
[2026-02-06 17:30:25] apptainer version 1.4.5-2.el9
[2026-02-06 17:30:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 17:30:25] c7-3-34.aglt2.org
[2026-02-06 17:30:25] apptainer works
[2026-02-06 17:30:25] Set ATHENA_PROC_NUMBER=8
[2026-02-06 17:30:25] Set ATHENA_CORE_NUMBER=8
[2026-02-06 17:30:25] Starting ATLAS job with PandaID=7004059106
[2026-02-06 17:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 22:36:44]  *** The last 200 lines of the pilot log: ***
[2026-02-06 22:36:44] 2026-02-07 03:35:52,579 | INFO     | extracted standard info from prmon json
[2026-02-06 22:36:44] 2026-02-07 03:35:52,579 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 22:36:44] 2026-02-07 03:35:52,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 22:36:44] 2026-02-07 03:35:52,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 22:36:44] 2026-02-07 03:35:52,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 22:36:44] 2026-02-07 03:35:52,584 | INFO     | fitting pss+swap vs Time
[2026-02-06 22:36:44] 2026-02-07 03:35:52,585 | INFO     | sum of square deviations: 8372188276.729984
[2026-02-06 22:36:44] 2026-02-07 03:35:52,587 | INFO     | sum of deviations: 103852939179.95993
[2026-02-06 22:36:44] 2026-02-07 03:35:52,587 | INFO     | mean x: 1770426219.53
[2026-02-06 22:36:44] 2026-02-07 03:35:52,587 | INFO     | mean y: 2449759.56
[2026-02-06 22:36:44] 2026-02-07 03:35:52,587 | INFO     | intersect: -21958829707.899517
[2026-02-06 22:36:44] 2026-02-07 03:35:52,587 | INFO     | chi2: 3.5307176417774913
[2026-02-06 22:36:44] 2026-02-07 03:35:52,588 | INFO     | sum of square deviations: 7960518186.725428
[2026-02-06 22:36:44] 2026-02-07 03:35:52,590 | INFO     | sum of deviations: 120483878522.69836
[2026-02-06 22:36:44] 2026-02-07 03:35:52,590 | INFO     | mean x: 1770426067.0305085
[2026-02-06 22:36:44] 2026-02-07 03:35:52,590 | INFO     | mean y: 2455826.477966102
[2026-02-06 22:36:44] 2026-02-07 03:35:52,590 | INFO     | intersect: -26793262013.753105
[2026-02-06 22:36:44] 2026-02-07 03:35:52,590 | INFO     | chi2: 2.847905298050483
[2026-02-06 22:36:44] 2026-02-07 03:35:52,590 | INFO     | current chi2=2.847905298050483 (change=19.33919426599222 %)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,591 | INFO     | right removable region: 294
[2026-02-06 22:36:44] 2026-02-07 03:35:52,591 | INFO     | sum of square deviations: 7960512696.725428
[2026-02-06 22:36:44] 2026-02-07 03:35:52,593 | INFO     | sum of deviations: 26891268281.21355
[2026-02-06 22:36:44] 2026-02-07 03:35:52,593 | INFO     | mean x: 1770426372.0305085
[2026-02-06 22:36:44] 2026-02-07 03:35:52,593 | INFO     | mean y: 2478212.9762711865
[2026-02-06 22:36:44] 2026-02-07 03:35:52,593 | INFO     | intersect: -5978168053.939684
[2026-02-06 22:36:44] 2026-02-07 03:35:52,594 | INFO     | chi2: 0.9935636559668279
[2026-02-06 22:36:44] 2026-02-07 03:35:52,594 | INFO     | current chi2=0.9935636559668279 (change=71.85944171206418 %)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,594 | INFO     | sum of square deviations: 7562558304.220709
[2026-02-06 22:36:44] 2026-02-07 03:35:52,596 | INFO     | sum of deviations: 4188032403.586197
[2026-02-06 22:36:44] 2026-02-07 03:35:52,596 | INFO     | mean x: 1770426524.5310345
[2026-02-06 22:36:44] 2026-02-07 03:35:52,596 | INFO     | mean y: 2486893.379310345
[2026-02-06 22:36:44] 2026-02-07 03:35:52,596 | INFO     | intersect: -977949006.0393203
[2026-02-06 22:36:44] 2026-02-07 03:35:52,597 | INFO     | chi2: 0.7847514338480349
[2026-02-06 22:36:44] 2026-02-07 03:35:52,597 | INFO     | current chi2=0.7847514338480349 (change=21.01649158207178 %)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,597 | INFO     | left removable region: 20
[2026-02-06 22:36:44] 2026-02-07 03:35:52,597 | INFO     | sum of square deviations: 6378608328.204373
[2026-02-06 22:36:44] 2026-02-07 03:35:52,599 | INFO     | sum of deviations: 9109551731.065693
[2026-02-06 22:36:44] 2026-02-07 03:35:52,599 | INFO     | mean x: 1770426646.5328467
[2026-02-06 22:36:44] 2026-02-07 03:35:52,599 | INFO     | mean y: 2499044.49270073
[2026-02-06 22:36:44] 2026-02-07 03:35:52,599 | INFO     | intersect: -2525919741.04954
[2026-02-06 22:36:44] 2026-02-07 03:35:52,599 | INFO     | chi2: 0.04295818885256017
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | current memory leak: 1.43 B/s (using 274 data points, chi2=0.04)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | could have reported an average CPU frequency of 3057 MHz (14 samples)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | ..............................
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | . Timing measurements:
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | . get job = 0 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | . initial setup = 13 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | . payload setup = 16 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | . stage-in = 0 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,600 | INFO     | . payload execution = 18258 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,601 | INFO     | . stage-out = 3 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,601 | INFO     | . log creation = 0 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,601 | INFO     | ..............................
[2026-02-06 22:36:44] 2026-02-07 03:35:52,628 | INFO     | sufficient remaining disk space (69578260480 B)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,628 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,629 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-7004059106: 4860482 B (within 5033164800 B limit)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,629 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-7004059106/HITS.48317952._013980.pool.root.1 does not exist (skip from workdir size calculation)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,629 | INFO     | total size of present files: 0 B (workdir size: 4860482 B)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,629 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-7004059106/HITS.48317952._013980.pool.root.1 since it does not exist
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | 
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | job summary report
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | --------------------------------------------------
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | PanDA job id: 7004059106
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | task id: 48317952
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | errors: (none)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | pilot state: finished 
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | transexitcode: 0
[2026-02-06 22:36:44] 2026-02-07 03:35:52,718 | INFO     | exeerrorcode: 0
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | exeerrordiag: 
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | exitcode: 0
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | exitmsg: OK
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | cpuconsumptiontime: 39886 s
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | nevents: 400
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | neventsw: 0
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | pid: 338810
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | pgrp: 338810
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | corecount: 8
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | event service: False
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | sizes: {0: 2282659, 1: 2283120, 18278: 2315585, 18282: 2324583, 18284: 2324639, 18285: 2324861}
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | --------------------------------------------------
[2026-02-06 22:36:44] 2026-02-07 03:35:52,719 | INFO     | 
[2026-02-06 22:36:44] 2026-02-07 03:35:52,720 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-02-06 22:36:44] 2026-02-07 03:35:52,875 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,876 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,877 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 22:36:44] 2026-02-07 03:35:52,878 | INFO     | job 7004059106 has completed (purged errors)
[2026-02-06 22:36:44] 2026-02-07 03:35:52,878 | INFO     | overall cleanup function is called
[2026-02-06 22:36:44] 2026-02-07 03:35:53,429 | INFO     | number of running child processes to parent process 338810: 1
[2026-02-06 22:36:44] 2026-02-07 03:35:53,429 | INFO     | maximum number of monitored processes: 6
[2026-02-06 22:36:44] 2026-02-07 03:35:53,429 | INFO     | aborting job monitoring since job object (job id=7004059106) has expired
[2026-02-06 22:36:44] 2026-02-07 03:35:53,896 | INFO     | --- collectZombieJob: --- 10, [338810]
[2026-02-06 22:36:44] 2026-02-07 03:35:53,896 | INFO     | zombie collector waiting for pid 338810
[2026-02-06 22:36:44] 2026-02-07 03:35:53,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 22:36:44] 2026-02-07 03:35:53,897 | INFO     | collected zombie processes
[2026-02-06 22:36:44] 2026-02-07 03:35:53,897 | INFO     | will attempt to kill all subprocesses of pid=338810
[2026-02-06 22:36:44] 2026-02-07 03:35:54,768 | INFO     | process IDs to be killed: [338810] (in reverse order)
[2026-02-06 22:36:44] 2026-02-07 03:35:55,002 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 22:36:44] 2026-02-07 03:35:55,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 22:36:44] 2026-02-07 03:35:55,021 | INFO     | did not find any defunct processes belonging to 338810
[2026-02-06 22:36:44] 2026-02-07 03:35:55,038 | INFO     | did not find any defunct processes belonging to 338810
[2026-02-06 22:36:44] 2026-02-07 03:35:55,039 | INFO     | ready for new job
[2026-02-06 22:36:44] 2026-02-07 03:35:55,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 22:36:44] 2026-02-07 03:35:55,041 | INFO     | **************************************
[2026-02-06 22:36:44] 2026-02-07 03:35:55,041 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 22:36:44] 2026-02-07 03:35:55,041 | INFO     | **************************************
[2026-02-06 22:36:44] 2026-02-07 03:35:55,041 | INFO     | 
[2026-02-06 22:36:44] 2026-02-07 03:35:55,046 | INFO     | architecture information:
[2026-02-06 22:36:44] 2026-02-07 03:35:55,047 | INFO     | executing command: cat /etc/os-release
[2026-02-06 22:36:44] 2026-02-07 03:35:55,103 | INFO     | cat /etc/os-release:
[2026-02-06 22:36:44] NAME="CentOS Linux"
[2026-02-06 22:36:44] VERSION="7 (Core)"
[2026-02-06 22:36:44] ID="centos"
[2026-02-06 22:36:44] ID_LIKE="rhel fedora"
[2026-02-06 22:36:44] VERSION_ID="7"
[2026-02-06 22:36:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 22:36:44] ANSI_COLOR="0;31"
[2026-02-06 22:36:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 22:36:44] HOME_URL="https://www.centos.org/"
[2026-02-06 22:36:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 22:36:44] 
[2026-02-06 22:36:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 22:36:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 22:36:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 22:36:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 22:36:44] 
[2026-02-06 22:36:44] 2026-02-07 03:35:55,104 | INFO     | **************************************
[2026-02-06 22:36:44] 2026-02-07 03:35:55,614 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-02-06 22:36:44] 2026-02-07 03:35:55,669 | INFO     | sufficient remaining disk space (69585600512 B)
[2026-02-06 22:36:44] 2026-02-07 03:35:55,670 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 22:36:44] 2026-02-07 03:35:55,670 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 22:36:44] 2026-02-07 03:35:55,670 | INFO     | update_server=False
[2026-02-06 22:36:44] 2026-02-07 03:35:55,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 22:36:44] 2026-02-07 03:35:55,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 22:36:44] 2026-02-07 03:35:55,938 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-06 22:36:44] 2026-02-07 03:35:55,938 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-06 22:36:44] 2026-02-07 03:35:55,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 22:36:44] 2026-02-07 03:35:55,939 | INFO     | will abort loop
[2026-02-06 22:36:44] 2026-02-07 03:35:56,409 | INFO     | all job control threads have been joined
[2026-02-06 22:36:44] 2026-02-07 03:35:56,676 | INFO     | [job] retrieve thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:56,712 | INFO     | all data control threads have been joined
[2026-02-06 22:36:44] 2026-02-07 03:35:56,741 | INFO     | all payload control threads have been joined
[2026-02-06 22:36:44] 2026-02-07 03:35:56,914 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:56,944 | INFO     | [job] job monitor thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,232 | INFO     | [payload] validate_post thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,344 | INFO     | [job] validate thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,415 | INFO     | [job] control thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,629 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,718 | INFO     | [data] control thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 22:36:44] 2026-02-07 03:35:57,748 | INFO     | [payload] control thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,804 | INFO     | [data] copytool_in thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,887 | INFO     | [payload] failed_post thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:57,940 | INFO     | [data] copytool_out thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:58,072 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:35:58,076 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 22:36:44] 2026-02-07 03:35:58,751 | INFO     | [job] queue monitor thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:36:02,086 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:36:06,495 | INFO     | job.realtimelogging is not enabled
[2026-02-06 22:36:44] 2026-02-07 03:36:07,501 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 22:36:44] 2026-02-07 03:36:26,358 | INFO     | PID=333151 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-06 22:36:44] 2026-02-07 03:36:26,358 | INFO     | .. there are 23 such processes running
[2026-02-06 22:36:44] 2026-02-07 03:36:26,358 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 22:36:44] 2026-02-07 03:36:26,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 22:36:44] 2026-02-07 03:36:26,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 22:36:44] 2026-02-07 03:36:37,473 | INFO     | [monitor] cgroup control has ended
[2026-02-06 22:36:44] 2026-02-07 03:36:38,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139975554840384)>', '<ExcThread(monitor, started 139974913545984)>']
[2026-02-06 22:36:44] 2026-02-07 03:36:39,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 22:36:44] 2026-02-07 03:36:39,457 | INFO     | [monitor] control thread has ended
[2026-02-06 22:36:44] 2026-02-07 03:36:43,741 | INFO     | all workflow threads have been joined
[2026-02-06 22:36:44] 2026-02-07 03:36:43,741 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 22:36:44] 2026-02-07 03:36:43,742 | INFO     | traces error code: 0
[2026-02-06 22:36:44] 2026-02-07 03:36:43,742 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 22:36:44] 2026-02-07 03:36:43,916 [wrapper] ==== pilot stdout END ====
[2026-02-06 22:36:44] 2026-02-07 03:36:43,945 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 22:36:44] 2026-02-07 03:36:43,963 [wrapper] pilotpid: 333151
[2026-02-06 22:36:44] 2026-02-07 03:36:43,966 [wrapper] Pilot exit status: 0
[2026-02-06 22:36:44] 2026-02-07 03:36:43,981 [wrapper] pandaids: 7004059106
[2026-02-06 22:36:44] 2026-02-07 03:36:44,088 [wrapper] cleanup supervisor_pilot 1327769 333152
[2026-02-06 22:36:44] 2026-02-07 03:36:44,090 [wrapper] Test setup, not cleaning
[2026-02-06 22:36:44] 2026-02-07 03:36:44,093 [wrapper] apfmon messages muted
[2026-02-06 22:36:44] 2026-02-07 03:36:44,095 [wrapper] ==== wrapper stdout END ====
[2026-02-06 22:36:44] 2026-02-07 03:36:44,097 [wrapper] ==== wrapper stderr END ====
[2026-02-06 22:36:44]  *** Error codes and diagnostics ***
[2026-02-06 22:36:44]     "exeErrorCode": 0,
[2026-02-06 22:36:44]     "exeErrorDiag": "",
[2026-02-06 22:36:44]     "pilotErrorCode": 0,
[2026-02-06 22:36:44]     "pilotErrorDiag": "",
[2026-02-06 22:36:44]  *** Listing of results directory ***
[2026-02-06 22:36:44] total 681820
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas    584627 Feb  6 09:32 pilot3.tar.gz
[2026-02-06 22:36:44] -rwx------. 1 boincer umatlas     36322 Feb  6 09:36 runpilot2-wrapper.sh
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas      5111 Feb  6 09:39 queuedata.json
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas       100 Feb  6 17:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 22:36:44] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  6 17:30 run_atlas
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas       105 Feb  6 17:30 job.xml
[2026-02-06 22:36:44] -rw-r--r--. 2 boincer umatlas 499132938 Feb  6 17:30 EVNT.48317949._000262.pool.root.1
[2026-02-06 22:36:44] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 17:30 start_atlas.sh
[2026-02-06 22:36:44] drwxrwx--x. 2 boincer umatlas      4096 Feb  6 17:30 shared
[2026-02-06 22:36:44] -rw-r--r--. 2 boincer umatlas    597955 Feb  6 17:30 input.tar.gz
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas         0 Feb  6 17:30 boinc_lockfile
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas      2524 Feb  6 17:30 pandaJob.out
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas        57 Feb  6 17:30 setup.sh.local
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas   1009520 Feb  6 17:30 agis_schedconf.cvmfs.json
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas       429 Feb  6 17:31 workernode_map.json
[2026-02-06 22:36:44] drwx------. 5 boincer umatlas      4096 Feb  6 17:31 pilot3
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas      6946 Feb  6 22:31 init_data.xml
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas 189019948 Feb  6 22:34 HITS.48317952._013980.pool.root.1
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas       531 Feb  6 22:35 boinc_task_state.xml
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas        95 Feb  6 22:35 pilot_heartbeat.json
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas      1047 Feb  6 22:35 memory_monitor_summary.json
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas   1513088 Feb  6 22:35 agis_ddmendpoints.agis.ALL.json
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas    550629 Feb  6 22:35 log.48317952._013980.job.log.tgz.1
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas      6356 Feb  6 22:35 heartbeat.json
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas      8192 Feb  6 22:36 boinc_mmap_file
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas      5077 Feb  6 22:36 pilotlog.txt
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas        28 Feb  6 22:36 wrapper_checkpoint.txt
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas   2488964 Feb  6 22:36 log.48317952._013980.job.log.1
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas       357 Feb  6 22:36 output.list
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas       620 Feb  6 22:36 runtime_log
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas   3061760 Feb  6 22:36 result.tar.gz
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas       659 Feb  6 22:36 UOmNDmH8b88n9Rq4apOajLDm4fhM0noT9bVooX4SDmFtYKDmW5oz2n.diag
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas      9337 Feb  6 22:36 runtime_log.err
[2026-02-06 22:36:44] -rw-r--r--. 1 boincer umatlas     21461 Feb  6 22:36 stderr.txt
[2026-02-06 22:36:44] HITS file was successfully produced:
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas 189019948 Feb  6 22:34 shared/HITS.pool.root.1
[2026-02-06 22:36:44]  *** Contents of shared directory: ***
[2026-02-06 22:36:44] total 675628
[2026-02-06 22:36:44] -rw-r--r--. 2 boincer umatlas 499132938 Feb  6 17:30 ATLAS.root_0
[2026-02-06 22:36:44] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 17:30 start_atlas.sh
[2026-02-06 22:36:44] -rw-r--r--. 2 boincer umatlas    597955 Feb  6 17:30 input.tar.gz
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas 189019948 Feb  6 22:34 HITS.pool.root.1
[2026-02-06 22:36:44] -rw-------. 1 boincer umatlas   3061760 Feb  6 22:36 result.tar.gz
22:36:45 (328777): run_atlas exited; CPU time 40688.032253
22:36:45 (328777): called boinc_finish(0)

</stderr_txt>
]]>

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