Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:46:59 (2301783): wrapper (7.7.26015): starting
16:46:59 (2301783): wrapper: running run_atlas (--nthreads 12)
[2026-02-07 16:46:59] Arguments: --nthreads 12
[2026-02-07 16:46:59] Threads: 12
[2026-02-07 16:46:59] Checking for CVMFS
[2026-02-07 16:46:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 16:46:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 16:46:59] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 16:47:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 16:47:00] 2.13.3.0 9156 2759 73480 155988 1 52 27167905 46080001 922 130560 0 2779519 99.994 98595 25132 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-07 16:47:00] CVMFS is ok
[2026-02-07 16:47:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 16:47:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 16:47:00] Further information can be found at the LHC@home message board.
[2026-02-07 16:47:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 16:47:00] Checking for apptainer binary...
[2026-02-07 16:47:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 16:47:00] Running /usr/bin/apptainer --version
[2026-02-07 16:47:00] apptainer version 1.4.5-2.el9
[2026-02-07 16:47:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 16:47:00] minis01.farm.particle.cz
[2026-02-07 16:47:00] apptainer works
[2026-02-07 16:47:00] Set ATHENA_PROC_NUMBER=12
[2026-02-07 16:47:00] Set ATHENA_CORE_NUMBER=12
[2026-02-07 16:47:00] Starting ATLAS job with PandaID=7004059079
[2026-02-07 16:47:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 17:42:27]  *** The last 200 lines of the pilot log: ***
[2026-02-07 17:42:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-07 17:42:27]  is_altstaged=None
[2026-02-07 17:42:27]  is_tar=False
[2026-02-07 17:42:27]  lfn=log.48317952._013953.job.log.tgz.1
[2026-02-07 17:42:27]  mtime=0
[2026-02-07 17:42:27]  protocol_id=None
[2026-02-07 17:42:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-07 17:42:27]  replicas=None
[2026-02-07 17:42:27]  scope=mc23_13p6TeV
[2026-02-07 17:42:27]  status=None
[2026-02-07 17:42:27]  status_code=0
[2026-02-07 17:42:27]  storage_token=
[2026-02-07 17:42:27]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-7004059079/log.48317952._013953.job.log.tgz.1
[2026-02-07 17:42:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/38/log.48317952._013953.job.log.tgz.1
[2026-02-07 17:42:27]  workdir=None
[2026-02-07 17:42:27] ]
[2026-02-07 17:42:27] 2026-02-07 16:41:53,034 | INFO     | transferring file log.48317952._013953.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-7004059079/log.48317952._013953.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-07 17:42:27] 2026-02-07 16:41:53,034 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-7004059079/log.48317952._013953.job.log.tgz.1 /var/lib/boinc/slots/0/log.48317952._013953.job
[2026-02-07 17:42:27] 2026-02-07 16:41:53,053 | INFO     | adding to output.list: log.48317952._013953.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/38/log.48317952._013953.job.log.tg
[2026-02-07 17:42:27] 2026-02-07 16:41:53,053 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-07 17:42:27] 2026-02-07 16:41:53,053 | INFO     | summary of transferred files:
[2026-02-07 17:42:27] 2026-02-07 16:41:53,053 | INFO     |  -- lfn=log.48317952._013953.job.log.tgz.1, status_code=0, status=transferred
[2026-02-07 17:42:27] 2026-02-07 16:41:53,054 | INFO     | stage-out finished correctly
[2026-02-07 17:42:27] 2026-02-07 16:41:53,175 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-07 17:42:27] 2026-02-07 16:41:53,275 | INFO     | PID=2305676 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 17:42:27] 2026-02-07 16:41:53,275 | INFO     | .. there are 2 such processes running
[2026-02-07 17:42:27] 2026-02-07 16:41:53,885 | WARNING  | process 2310379 can no longer be monitored (due to stat problems) - aborting
[2026-02-07 17:42:27] 2026-02-07 16:41:53,886 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-7004059079/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 17:42:27] 2026-02-07 16:41:54,026 | INFO     | number of running child processes to parent process 2310379: 1
[2026-02-07 17:42:27] 2026-02-07 16:41:54,026 | INFO     | maximum number of monitored processes: 6
[2026-02-07 17:42:27] 2026-02-07 16:41:54,275 | INFO     | time since job start (3282s) is within the limit (349056.0s)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,844 | INFO     | job 7004059079 has state=finished
[2026-02-07 17:42:27] 2026-02-07 16:41:55,844 | INFO     | preparing for final server update for job 7004059079 in state='finished'
[2026-02-07 17:42:27] 2026-02-07 16:41:55,844 | INFO     | reading metadata from: /var/lib/boinc/slots/0/PanDA_Pilot-7004059079/jobReport.json
[2026-02-07 17:42:27] 2026-02-07 16:41:55,847 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/0/workernode_map.json
[2026-02-07 17:42:27] 2026-02-07 16:41:55,847 | INFO     | this job has now completed (state=finished)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,847 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,847 | INFO     | log transfer has been attempted: DONE
[2026-02-07 17:42:27] 2026-02-07 16:41:55,847 | INFO     | job 7004059079 has finished - writing final server update
[2026-02-07 17:42:27] 2026-02-07 16:41:55,848 | INFO     | total number of processed events: 400 (read)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,854 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-7004059079/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,855 | INFO     | extracted standard info from prmon json
[2026-02-07 17:42:27] 2026-02-07 16:41:55,855 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 17:42:27] 2026-02-07 16:41:55,855 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 17:42:27] 2026-02-07 16:41:55,856 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 17:42:27] 2026-02-07 16:41:55,856 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 17:42:27] 2026-02-07 16:41:55,857 | INFO     | fitting pss+swap vs Time
[2026-02-07 17:42:27] 2026-02-07 16:41:55,857 | INFO     | sum of square deviations: 32179208.0
[2026-02-07 17:42:27] 2026-02-07 16:41:55,858 | INFO     | sum of deviations: -5899402048.999999
[2026-02-07 17:42:27] 2026-02-07 16:41:55,858 | INFO     | mean x: 1770480961.0
[2026-02-07 17:42:27] 2026-02-07 16:41:55,858 | INFO     | mean y: 2862373.595744681
[2026-02-07 17:42:27] 2026-02-07 16:41:55,858 | INFO     | intersect: 324584468267.65283
[2026-02-07 17:42:27] 2026-02-07 16:41:55,858 | INFO     | chi2: 0.048458056545436015
[2026-02-07 17:42:27] 2026-02-07 16:41:55,858 | INFO     | current memory leak: -183.33 B/s (using 47 data points, chi2=0.05)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | could have reported an average CPU frequency of 2757 MHz (5 samples)
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | ..............................
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | . Timing measurements:
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | . get job = 0 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | . initial setup = 5 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | . payload setup = 5 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | . stage-in = 0 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,859 | INFO     | . payload execution = 3259 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,860 | INFO     | . stage-out = 0 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,860 | INFO     | . log creation = 0 s
[2026-02-07 17:42:27] 2026-02-07 16:41:55,860 | INFO     | ..............................
[2026-02-07 17:42:27] 2026-02-07 16:41:56,110 | INFO     | 
[2026-02-07 17:42:27] 2026-02-07 16:41:56,111 | INFO     | job summary report
[2026-02-07 17:42:27] 2026-02-07 16:41:56,111 | INFO     | --------------------------------------------------
[2026-02-07 17:42:27] 2026-02-07 16:41:56,111 | INFO     | PanDA job id: 7004059079
[2026-02-07 17:42:27] 2026-02-07 16:41:56,111 | INFO     | task id: 48317952
[2026-02-07 17:42:27] 2026-02-07 16:41:56,111 | INFO     | errors: (none)
[2026-02-07 17:42:27] 2026-02-07 16:41:56,111 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | pilot state: finished 
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | transexitcode: 0
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | exeerrorcode: 0
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | exeerrordiag: 
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | exitcode: 0
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | exitmsg: OK
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | cpuconsumptiontime: 35315 s
[2026-02-07 17:42:27] 2026-02-07 16:41:56,112 | INFO     | nevents: 400
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | neventsw: 0
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | pid: 2310379
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | pgrp: 2310379
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | corecount: 12
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | event service: False
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | sizes: {0: 2283090, 11: 2283090, 3267: 2308595, 3269: 2317649, 3272: 2317819}
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | --------------------------------------------------
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | 
[2026-02-07 17:42:27] 2026-02-07 16:41:56,113 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-02-07 17:42:27] 2026-02-07 16:41:56,132 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,133 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,135 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,135 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 17:42:27] 2026-02-07 16:41:56,135 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,135 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 17:42:27] 2026-02-07 16:41:56,135 | INFO     | job 7004059079 has completed (purged errors)
[2026-02-07 17:42:27] 2026-02-07 16:41:56,135 | INFO     | overall cleanup function is called
[2026-02-07 17:42:27] 2026-02-07 16:41:57,144 | INFO     | --- collectZombieJob: --- 10, [2310379]
[2026-02-07 17:42:27] 2026-02-07 16:41:57,145 | INFO     | zombie collector waiting for pid 2310379
[2026-02-07 17:42:27] 2026-02-07 16:41:57,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 17:42:27] 2026-02-07 16:41:57,145 | INFO     | collected zombie processes
[2026-02-07 17:42:27] 2026-02-07 16:41:57,145 | INFO     | will attempt to kill all subprocesses of pid=2310379
[2026-02-07 17:42:27] 2026-02-07 16:41:57,288 | INFO     | process IDs to be killed: [2310379] (in reverse order)
[2026-02-07 17:42:27] 2026-02-07 16:41:57,340 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 17:42:27] 2026-02-07 16:41:57,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 17:42:27] 2026-02-07 16:41:57,345 | INFO     | did not find any defunct processes belonging to 2310379
[2026-02-07 17:42:27] 2026-02-07 16:41:57,349 | INFO     | did not find any defunct processes belonging to 2310379
[2026-02-07 17:42:27] 2026-02-07 16:41:57,350 | INFO     | ready for new job
[2026-02-07 17:42:27] 2026-02-07 16:41:57,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 17:42:27] 2026-02-07 16:41:57,351 | INFO     | **************************************
[2026-02-07 17:42:27] 2026-02-07 16:41:57,351 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 17:42:27] 2026-02-07 16:41:57,351 | INFO     | **************************************
[2026-02-07 17:42:27] 2026-02-07 16:41:57,351 | INFO     | 
[2026-02-07 17:42:27] 2026-02-07 16:41:57,353 | INFO     | architecture information:
[2026-02-07 17:42:27] 2026-02-07 16:41:57,353 | INFO     | executing command: cat /etc/os-release
[2026-02-07 17:42:27] 2026-02-07 16:41:57,368 | INFO     | cat /etc/os-release:
[2026-02-07 17:42:27] NAME="CentOS Linux"
[2026-02-07 17:42:27] VERSION="7 (Core)"
[2026-02-07 17:42:27] ID="centos"
[2026-02-07 17:42:27] ID_LIKE="rhel fedora"
[2026-02-07 17:42:27] VERSION_ID="7"
[2026-02-07 17:42:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 17:42:27] ANSI_COLOR="0;31"
[2026-02-07 17:42:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 17:42:27] HOME_URL="https://www.centos.org/"
[2026-02-07 17:42:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 17:42:27] 
[2026-02-07 17:42:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 17:42:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 17:42:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 17:42:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 17:42:27] 
[2026-02-07 17:42:27] 2026-02-07 16:41:57,368 | INFO     | **************************************
[2026-02-07 17:42:27] 2026-02-07 16:41:57,871 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-02-07 17:42:27] 2026-02-07 16:41:57,886 | INFO     | sufficient remaining disk space (50756321280 B)
[2026-02-07 17:42:27] 2026-02-07 16:41:57,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 17:42:27] 2026-02-07 16:41:57,887 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 17:42:27] 2026-02-07 16:41:57,887 | INFO     | update_server=False
[2026-02-07 17:42:27] 2026-02-07 16:41:57,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 17:42:27] 2026-02-07 16:41:57,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 17:42:27] 2026-02-07 16:41:57,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 17:42:27] 2026-02-07 16:41:57,888 | INFO     | aborting loop
[2026-02-07 17:42:27] 2026-02-07 16:41:58,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 17:42:27] 2026-02-07 16:41:58,696 | INFO     | all data control threads have been joined
[2026-02-07 17:42:27] 2026-02-07 16:41:58,892 | INFO     | [job] retrieve thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:58,893 | INFO     | [job] queue monitor thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:58,893 | INFO     | [job] job monitor thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:59,070 | INFO     | all payload control threads have been joined
[2026-02-07 17:42:27] 2026-02-07 16:41:59,102 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:59,218 | INFO     | [data] copytool_in thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:59,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 17:42:27] 2026-02-07 16:41:59,407 | INFO     | all job control threads have been joined
[2026-02-07 17:42:27] 2026-02-07 16:41:59,557 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:59,701 | INFO     | [data] control thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:41:59,883 | INFO     | [payload] failed_post thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,002 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,075 | INFO     | [payload] control thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,111 | INFO     | [job] validate thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,338 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,354 | INFO     | [payload] validate_post thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,411 | INFO     | [job] control thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:00,637 | INFO     | [data] copytool_out thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:03,258 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 17:42:27] 2026-02-07 16:42:16,995 | INFO     | [monitor] cgroup control has ended
[2026-02-07 17:42:27] 2026-02-07 16:42:17,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140556003903296)>', '<ExcThread(monitor, started 140555648476928)>']
[2026-02-07 17:42:27] 2026-02-07 16:42:23,000 | INFO     | all workflow threads have been joined
[2026-02-07 17:42:27] 2026-02-07 16:42:23,000 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 17:42:27] 2026-02-07 16:42:23,000 | INFO     | traces error code: 0
[2026-02-07 17:42:27] 2026-02-07 16:42:23,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 17:42:27] 2026-02-07 16:42:27,555 | INFO     | PID=2305676 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 17:42:27] 2026-02-07 16:42:27,556 | INFO     | .. there are 2 such processes running
[2026-02-07 17:42:27] 2026-02-07 16:42:27,556 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 17:42:27] 2026-02-07 16:42:27,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 17:42:27] 2026-02-07 16:42:27,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 17:42:27] 2026-02-07 16:42:27,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 17:42:27] 2026-02-07 16:42:27,556 | INFO     | [monitor] control thread has ended
[2026-02-07 17:42:27] 2026-02-07 16:42:27,678 [wrapper] ==== pilot stdout END ====
[2026-02-07 17:42:27] 2026-02-07 16:42:27,681 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 17:42:27] 2026-02-07 16:42:27,683 [wrapper] pilotpid: 2305676
[2026-02-07 17:42:27] 2026-02-07 16:42:27,686 [wrapper] Pilot exit status: 0
[2026-02-07 17:42:27] 2026-02-07 16:42:27,696 [wrapper] pandaids: 7004059079
[2026-02-07 17:42:27] 2026-02-07 16:42:27,733 [wrapper] cleanup supervisor_pilot 2349964 2305677
[2026-02-07 17:42:27] 2026-02-07 16:42:27,736 [wrapper] Test setup, not cleaning
[2026-02-07 17:42:27] 2026-02-07 16:42:27,739 [wrapper] apfmon messages muted
[2026-02-07 17:42:27] 2026-02-07 16:42:27,741 [wrapper] ==== wrapper stdout END ====
[2026-02-07 17:42:27] 2026-02-07 16:42:27,744 [wrapper] ==== wrapper stderr END ====
[2026-02-07 17:42:27]  *** Error codes and diagnostics ***
[2026-02-07 17:42:27]     "exeErrorCode": 0,
[2026-02-07 17:42:27]     "exeErrorDiag": "",
[2026-02-07 17:42:27]     "pilotErrorCode": 0,
[2026-02-07 17:42:27]     "pilotErrorDiag": "",
[2026-02-07 17:42:27]  *** Listing of results directory ***
[2026-02-07 17:42:27] total 673276
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc    584627 Feb  6 15:32 pilot3.tar.gz
[2026-02-07 17:42:27] -rwx------. 1 boinc boinc     36322 Feb  6 15:36 runpilot2-wrapper.sh
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc      5111 Feb  6 15:39 queuedata.json
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc       100 Feb  7 16:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 17:42:27] -rwxr-xr-x. 1 boinc boinc      7986 Feb  7 16:46 run_atlas
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc       105 Feb  7 16:46 job.xml
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc      6522 Feb  7 16:46 init_data.xml
[2026-02-07 17:42:27] -rw-r--r--. 2 boinc boinc 499132938 Feb  7 16:46 EVNT.48317949._000262.pool.root.1
[2026-02-07 17:42:27] -rw-r--r--. 2 boinc boinc     15845 Feb  7 16:46 start_atlas.sh
[2026-02-07 17:42:27] drwxrwx--x. 2 boinc boinc      4096 Feb  7 16:46 shared
[2026-02-07 17:42:27] -rw-r--r--. 2 boinc boinc    597952 Feb  7 16:46 input.tar.gz
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc         0 Feb  7 16:46 boinc_lockfile
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc      2523 Feb  7 16:47 pandaJob.out
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc   1009502 Feb  7 16:47 agis_schedconf.cvmfs.json
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc   1513088 Feb  7 16:47 agis_ddmendpoints.agis.ALL.json
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc       430 Feb  7 16:47 workernode_map.json
[2026-02-07 17:42:27] drwx------. 5 boinc boinc      4096 Feb  7 16:47 pilot3
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc 184635077 Feb  7 17:41 HITS.48317952._013953.pool.root.1
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc       530 Feb  7 17:41 boinc_task_state.xml
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc      1018 Feb  7 17:41 memory_monitor_summary.json
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc    367555 Feb  7 17:41 log.48317952._013953.job.log.tgz.1
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc        95 Feb  7 17:41 pilot_heartbeat.json
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc      6334 Feb  7 17:41 heartbeat.json
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc        27 Feb  7 17:42 wrapper_checkpoint.txt
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc      8192 Feb  7 17:42 boinc_mmap_file
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc       822 Feb  7 17:42 pilotlog.txt
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc    500603 Feb  7 17:42 log.48317952._013953.job.log.1
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc       357 Feb  7 17:42 output.list
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc       620 Feb  7 17:42 runtime_log
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc    880640 Feb  7 17:42 result.tar.gz
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc      8863 Feb  7 17:42 runtime_log.err
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc       663 Feb  7 17:42 0q5MDmH8b88n9Rq4apOajLDm4fhM0noT9bVooX4SDmosYKDmiC34Dn.diag
[2026-02-07 17:42:27] -rw-r--r--. 1 boinc boinc     21532 Feb  7 17:42 stderr.txt
[2026-02-07 17:42:27] HITS file was successfully produced:
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc 184635077 Feb  7 17:41 shared/HITS.pool.root.1
[2026-02-07 17:42:27]  *** Contents of shared directory: ***
[2026-02-07 17:42:27] total 669212
[2026-02-07 17:42:27] -rw-r--r--. 2 boinc boinc 499132938 Feb  7 16:46 ATLAS.root_0
[2026-02-07 17:42:27] -rw-r--r--. 2 boinc boinc     15845 Feb  7 16:46 start_atlas.sh
[2026-02-07 17:42:27] -rw-r--r--. 2 boinc boinc    597952 Feb  7 16:46 input.tar.gz
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc 184635077 Feb  7 17:41 HITS.pool.root.1
[2026-02-07 17:42:27] -rw-------. 1 boinc boinc    880640 Feb  7 17:42 result.tar.gz
17:42:28 (2301783): run_atlas exited; CPU time 35357.169684
17:42:28 (2301783): called boinc_finish(0)

</stderr_txt>
]]>

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