Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:27:52 (3539417): wrapper (7.7.26015): starting
16:27:52 (3539417): wrapper: running run_atlas (--nthreads 11)
[2026-02-06 16:27:52] Arguments: --nthreads 11
[2026-02-06 16:27:52] Threads: 11
[2026-02-06 16:27:52] Checking for CVMFS
[2026-02-06 16:27:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 16:27:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 16:27:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 16:27:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 16:27:52] 2.13.3.0 270452 21769 229200 155960 0 188 32869276 40960000 3664 16776704 0 24657567 99.777 26251009 39923 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-06 16:27:52] CVMFS is ok
[2026-02-06 16:27:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 16:27:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 16:27:52] Further information can be found at the LHC@home message board.
[2026-02-06 16:27:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 16:27:52] Checking for apptainer binary...
[2026-02-06 16:27:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 16:27:52] Running /usr/bin/apptainer --version
[2026-02-06 16:27:52] apptainer version 1.4.5-2.el9
[2026-02-06 16:27:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 16:27:52] c6-6-39-1.aglt2.org
[2026-02-06 16:27:52] apptainer works
[2026-02-06 16:27:52] Set ATHENA_PROC_NUMBER=11
[2026-02-06 16:27:52] Set ATHENA_CORE_NUMBER=11
[2026-02-06 16:27:52] Starting ATLAS job with PandaID=7004059108
[2026-02-06 16:27:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 17:28:19]  *** The last 200 lines of the pilot log: ***
[2026-02-06 17:28:19]  is_tar=False
[2026-02-06 17:28:19]  lfn=log.48317952._013982.job.log.tgz.1
[2026-02-06 17:28:19]  mtime=0
[2026-02-06 17:28:19]  protocol_id=None
[2026-02-06 17:28:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-06 17:28:19]  replicas=None
[2026-02-06 17:28:19]  scope=mc23_13p6TeV
[2026-02-06 17:28:19]  status=None
[2026-02-06 17:28:19]  status_code=0
[2026-02-06 17:28:19]  storage_token=
[2026-02-06 17:28:19]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-7004059108/log.48317952._013982.job.log.tgz.1
[2026-02-06 17:28:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/a1/log.48317952._013982.job.log.tgz.1
[2026-02-06 17:28:19]  workdir=None
[2026-02-06 17:28:19] ]
[2026-02-06 17:28:19] 2026-02-06 22:27:30,527 | INFO     | transferring file log.48317952._013982.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-7004059108/log.48317952._013982.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-06 17:28:19] 2026-02-06 22:27:30,527 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-7004059108/log.48317952._013982.job.log.tgz.1 /tmp/boinchome/slots/2/log.48317952._013982.job
[2026-02-06 17:28:19] 2026-02-06 22:27:30,543 | INFO     | adding to output.list: log.48317952._013982.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/a1/log.48317952._013982.job.log.tg
[2026-02-06 17:28:19] 2026-02-06 22:27:30,544 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-06 17:28:19] 2026-02-06 22:27:30,544 | INFO     | summary of transferred files:
[2026-02-06 17:28:19] 2026-02-06 22:27:30,544 | INFO     |  -- lfn=log.48317952._013982.job.log.tgz.1, status_code=0, status=transferred
[2026-02-06 17:28:19] 2026-02-06 22:27:30,544 | INFO     | stage-out finished correctly
[2026-02-06 17:28:19] 2026-02-06 22:27:30,921 | INFO     | PID=3543200 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 17:28:19] 2026-02-06 22:27:30,921 | INFO     | .. there are 5 such processes running
[2026-02-06 17:28:19] 2026-02-06 22:27:31,922 | INFO     | time since job start (3564s) is within the limit (349056.0s)
[2026-02-06 17:28:19] 2026-02-06 22:27:32,706 | INFO     | monitor loop #269: job 0:7004059108 is in state 'finished'
[2026-02-06 17:28:19] 2026-02-06 22:27:32,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-06 17:28:19] 2026-02-06 22:27:33,718 | INFO     | job 7004059108 has state=finished
[2026-02-06 17:28:19] 2026-02-06 22:27:33,718 | INFO     | preparing for final server update for job 7004059108 in state='finished'
[2026-02-06 17:28:19] 2026-02-06 22:27:33,775 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,776 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7004059108/jobReport.json
[2026-02-06 17:28:19] 2026-02-06 22:27:33,778 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-02-06 17:28:19] 2026-02-06 22:27:33,779 | INFO     | this job has now completed (state=finished)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,779 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,779 | INFO     | log transfer has been attempted: DONE
[2026-02-06 17:28:19] 2026-02-06 22:27:33,779 | INFO     | job 7004059108 has finished - writing final server update
[2026-02-06 17:28:19] 2026-02-06 22:27:33,779 | INFO     | total number of processed events: 400 (read)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,788 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7004059108/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,789 | INFO     | extracted standard info from prmon json
[2026-02-06 17:28:19] 2026-02-06 22:27:33,789 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 17:28:19] 2026-02-06 22:27:33,789 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 17:28:19] 2026-02-06 22:27:33,789 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 17:28:19] 2026-02-06 22:27:33,813 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 17:28:19] 2026-02-06 22:27:33,815 | INFO     | fitting pss+swap vs Time
[2026-02-06 17:28:19] 2026-02-06 22:27:33,815 | INFO     | sum of square deviations: 43584073.0
[2026-02-06 17:28:19] 2026-02-06 22:27:33,815 | INFO     | sum of deviations: -1196299700.5
[2026-02-06 17:28:19] 2026-02-06 22:27:33,815 | INFO     | mean x: 1770415167.5
[2026-02-06 17:28:19] 2026-02-06 22:27:33,815 | INFO     | mean y: 2717088.25
[2026-02-06 17:28:19] 2026-02-06 22:27:33,815 | INFO     | intersect: 48597237720.612816
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | chi2: 0.0038801745803789325
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | current memory leak: -27.45 B/s (using 52 data points, chi2=0.00)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | could have reported an average CPU frequency of 3056 MHz (5 samples)
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | ..............................
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | . Timing measurements:
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | . get job = 0 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | . initial setup = 6 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | . payload setup = 4 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | . stage-in = 0 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,816 | INFO     | . payload execution = 3543 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,817 | INFO     | . stage-out = 0 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,817 | INFO     | . log creation = 0 s
[2026-02-06 17:28:19] 2026-02-06 22:27:33,817 | INFO     | ..............................
[2026-02-06 17:28:19] 2026-02-06 22:27:33,926 | INFO     | time since job start (3566s) is within the limit (349056.0s)
[2026-02-06 17:28:19] 2026-02-06 22:27:34,163 | INFO     | 
[2026-02-06 17:28:19] 2026-02-06 22:27:34,163 | INFO     | job summary report
[2026-02-06 17:28:19] 2026-02-06 22:27:34,163 | INFO     | --------------------------------------------------
[2026-02-06 17:28:19] 2026-02-06 22:27:34,163 | INFO     | PanDA job id: 7004059108
[2026-02-06 17:28:19] 2026-02-06 22:27:34,163 | INFO     | task id: 48317952
[2026-02-06 17:28:19] 2026-02-06 22:27:34,163 | INFO     | errors: (none)
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | pilot state: finished 
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | transexitcode: 0
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | exeerrorcode: 0
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | exeerrordiag: 
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | exitcode: 0
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | exitmsg: OK
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | cpuconsumptiontime: 35717 s
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | nevents: 400
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | neventsw: 0
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | pid: 3547577
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | pgrp: 3547577
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | corecount: 11
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | event service: False
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | sizes: {0: 2283092, 11: 2283092, 3551: 2308793, 3552: 2317791, 3555: 2318073}
[2026-02-06 17:28:19] 2026-02-06 22:27:34,164 | INFO     | --------------------------------------------------
[2026-02-06 17:28:19] 2026-02-06 22:27:34,165 | INFO     | 
[2026-02-06 17:28:19] 2026-02-06 22:27:34,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-02-06 17:28:19] 2026-02-06 22:27:34,181 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | job 7004059108 has completed (purged errors)
[2026-02-06 17:28:19] 2026-02-06 22:27:34,183 | INFO     | overall cleanup function is called
[2026-02-06 17:28:19] 2026-02-06 22:27:35,188 | INFO     | --- collectZombieJob: --- 10, [3547577]
[2026-02-06 17:28:19] 2026-02-06 22:27:35,188 | INFO     | zombie collector waiting for pid 3547577
[2026-02-06 17:28:19] 2026-02-06 22:27:35,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 17:28:19] 2026-02-06 22:27:35,189 | INFO     | collected zombie processes
[2026-02-06 17:28:19] 2026-02-06 22:27:35,189 | INFO     | will attempt to kill all subprocesses of pid=3547577
[2026-02-06 17:28:19] 2026-02-06 22:27:35,430 | INFO     | process IDs to be killed: [3547577] (in reverse order)
[2026-02-06 17:28:19] 2026-02-06 22:27:35,508 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 17:28:19] 2026-02-06 22:27:35,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 17:28:19] 2026-02-06 22:27:35,517 | INFO     | did not find any defunct processes belonging to 3547577
[2026-02-06 17:28:19] 2026-02-06 22:27:35,525 | INFO     | did not find any defunct processes belonging to 3547577
[2026-02-06 17:28:19] 2026-02-06 22:27:35,526 | INFO     | ready for new job
[2026-02-06 17:28:19] 2026-02-06 22:27:35,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 17:28:19] 2026-02-06 22:27:35,527 | INFO     | **************************************
[2026-02-06 17:28:19] 2026-02-06 22:27:35,528 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 17:28:19] 2026-02-06 22:27:35,528 | INFO     | **************************************
[2026-02-06 17:28:19] 2026-02-06 22:27:35,528 | INFO     | 
[2026-02-06 17:28:19] 2026-02-06 22:27:35,531 | INFO     | architecture information:
[2026-02-06 17:28:19] 2026-02-06 22:27:35,531 | INFO     | executing command: cat /etc/os-release
[2026-02-06 17:28:19] 2026-02-06 22:27:35,543 | INFO     | cat /etc/os-release:
[2026-02-06 17:28:19] NAME="CentOS Linux"
[2026-02-06 17:28:19] VERSION="7 (Core)"
[2026-02-06 17:28:19] ID="centos"
[2026-02-06 17:28:19] ID_LIKE="rhel fedora"
[2026-02-06 17:28:19] VERSION_ID="7"
[2026-02-06 17:28:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 17:28:19] ANSI_COLOR="0;31"
[2026-02-06 17:28:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 17:28:19] HOME_URL="https://www.centos.org/"
[2026-02-06 17:28:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 17:28:19] 
[2026-02-06 17:28:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 17:28:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 17:28:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 17:28:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 17:28:19] 
[2026-02-06 17:28:19] 2026-02-06 22:27:35,544 | INFO     | **************************************
[2026-02-06 17:28:19] 2026-02-06 22:27:36,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-02-06 17:28:19] 2026-02-06 22:27:36,062 | INFO     | sufficient remaining disk space (69151490048 B)
[2026-02-06 17:28:19] 2026-02-06 22:27:36,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 17:28:19] 2026-02-06 22:27:36,063 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 17:28:19] 2026-02-06 22:27:36,063 | INFO     | update_server=False
[2026-02-06 17:28:19] 2026-02-06 22:27:36,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 17:28:19] 2026-02-06 22:27:36,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 17:28:19] 2026-02-06 22:27:36,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 17:28:19] 2026-02-06 22:27:36,203 | INFO     | all payload control threads have been joined
[2026-02-06 17:28:19] 2026-02-06 22:27:36,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 17:28:19] 2026-02-06 22:27:36,220 | INFO     | aborting loop
[2026-02-06 17:28:19] 2026-02-06 22:27:36,848 | INFO     | all data control threads have been joined
[2026-02-06 17:28:19] 2026-02-06 22:27:37,069 | INFO     | [job] retrieve thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:37,208 | INFO     | [payload] control thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:37,221 | INFO     | [job] job monitor thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:37,249 | INFO     | all job control threads have been joined
[2026-02-06 17:28:19] 2026-02-06 22:27:37,268 | INFO     | [payload] validate_post thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:37,302 | INFO     | [data] copytool_in thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:37,851 | INFO     | [data] control thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,056 | INFO     | [payload] failed_post thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,067 | INFO     | [job] validate thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,068 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,140 | INFO     | [data] copytool_out thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,250 | INFO     | [job] control thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,266 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,431 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:38,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 17:28:19] 2026-02-06 22:27:39,910 | INFO     | [job] queue monitor thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:40,069 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:27:46,669 | INFO     | job.realtimelogging is not enabled
[2026-02-06 17:28:19] 2026-02-06 22:27:47,673 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 17:28:19] 2026-02-06 22:28:00,046 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-02-06 17:28:19] 2026-02-06 22:28:07,306 | INFO     | PID=3543200 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 17:28:19] 2026-02-06 22:28:07,306 | INFO     | .. there are 5 such processes running
[2026-02-06 17:28:19] 2026-02-06 22:28:07,307 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 17:28:19] 2026-02-06 22:28:07,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 17:28:19] 2026-02-06 22:28:07,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 17:28:19] 2026-02-06 22:28:12,371 | INFO     | [monitor] cgroup control has ended
[2026-02-06 17:28:19] 2026-02-06 22:28:14,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154775230272)>', '<ExcThread(monitor, started 140154421364480)>']
[2026-02-06 17:28:19] 2026-02-06 22:28:15,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 17:28:19] 2026-02-06 22:28:15,348 | INFO     | [monitor] control thread has ended
[2026-02-06 17:28:19] 2026-02-06 22:28:19,401 | INFO     | all workflow threads have been joined
[2026-02-06 17:28:19] 2026-02-06 22:28:19,401 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 17:28:19] 2026-02-06 22:28:19,402 | INFO     | traces error code: 0
[2026-02-06 17:28:19] 2026-02-06 22:28:19,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 17:28:19] 2026-02-06 22:28:19,513 [wrapper] ==== pilot stdout END ====
[2026-02-06 17:28:19] 2026-02-06 22:28:19,515 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 17:28:19] 2026-02-06 22:28:19,518 [wrapper] pilotpid: 3543200
[2026-02-06 17:28:19] 2026-02-06 22:28:19,520 [wrapper] Pilot exit status: 0
[2026-02-06 17:28:19] 2026-02-06 22:28:19,530 [wrapper] pandaids: 7004059108
[2026-02-06 17:28:19] 2026-02-06 22:28:19,581 [wrapper] cleanup supervisor_pilot 3717989 3543201
[2026-02-06 17:28:19] 2026-02-06 22:28:19,584 [wrapper] Test setup, not cleaning
[2026-02-06 17:28:19] 2026-02-06 22:28:19,587 [wrapper] apfmon messages muted
[2026-02-06 17:28:19] 2026-02-06 22:28:19,590 [wrapper] ==== wrapper stdout END ====
[2026-02-06 17:28:19] 2026-02-06 22:28:19,592 [wrapper] ==== wrapper stderr END ====
[2026-02-06 17:28:19]  *** Error codes and diagnostics ***
[2026-02-06 17:28:19]     "exeErrorCode": 0,
[2026-02-06 17:28:19]     "exeErrorDiag": "",
[2026-02-06 17:28:19]     "pilotErrorCode": 0,
[2026-02-06 17:28:19]     "pilotErrorDiag": "",
[2026-02-06 17:28:19]  *** Listing of results directory ***
[2026-02-06 17:28:19] total 669248
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas    584627 Feb  6 09:32 pilot3.tar.gz
[2026-02-06 17:28:19] -rwx------. 1 boincer umatlas     36322 Feb  6 09:36 runpilot2-wrapper.sh
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas      5111 Feb  6 09:39 queuedata.json
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas       100 Feb  6 16:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 17:28:19] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  6 16:27 run_atlas
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas       105 Feb  6 16:27 job.xml
[2026-02-06 17:28:19] -rw-r--r--. 2 boincer umatlas 499132938 Feb  6 16:27 EVNT.48317949._000262.pool.root.1
[2026-02-06 17:28:19] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 16:27 start_atlas.sh
[2026-02-06 17:28:19] drwxrwx--x. 2 boincer umatlas      4096 Feb  6 16:27 shared
[2026-02-06 17:28:19] -rw-r--r--. 2 boincer umatlas    597953 Feb  6 16:27 input.tar.gz
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas         0 Feb  6 16:27 boinc_lockfile
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas      2524 Feb  6 16:27 pandaJob.out
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas        57 Feb  6 16:27 setup.sh.local
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas   1009520 Feb  6 16:28 agis_schedconf.cvmfs.json
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas   1513088 Feb  6 16:28 agis_ddmendpoints.agis.ALL.json
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas       441 Feb  6 16:28 workernode_map.json
[2026-02-06 17:28:19] drwx------. 5 boincer umatlas      4096 Feb  6 16:28 pilot3
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas      6843 Feb  6 17:22 init_data.xml
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas 180365922 Feb  6 17:26 HITS.48317952._013982.pool.root.1
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas       530 Feb  6 17:27 boinc_task_state.xml
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas      1046 Feb  6 17:27 memory_monitor_summary.json
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas    391961 Feb  6 17:27 log.48317952._013982.job.log.tgz.1
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas      6384 Feb  6 17:27 heartbeat.json
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas        95 Feb  6 17:28 pilot_heartbeat.json
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas      8192 Feb  6 17:28 boinc_mmap_file
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas        27 Feb  6 17:28 wrapper_checkpoint.txt
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas      4891 Feb  6 17:28 pilotlog.txt
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas    541586 Feb  6 17:28 log.48317952._013982.job.log.1
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas       357 Feb  6 17:28 output.list
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas       620 Feb  6 17:28 runtime_log
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas    952320 Feb  6 17:28 result.tar.gz
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas      9348 Feb  6 17:28 runtime_log.err
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas       652 Feb  6 17:28 azOKDmH8b88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8FZKDm7XDkjm.diag
[2026-02-06 17:28:19] -rw-r--r--. 1 boincer umatlas     21576 Feb  6 17:28 stderr.txt
[2026-02-06 17:28:19] HITS file was successfully produced:
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas 180365922 Feb  6 17:26 shared/HITS.pool.root.1
[2026-02-06 17:28:19]  *** Contents of shared directory: ***
[2026-02-06 17:28:19] total 665112
[2026-02-06 17:28:19] -rw-r--r--. 2 boincer umatlas 499132938 Feb  6 16:27 ATLAS.root_0
[2026-02-06 17:28:19] -rw-r--r--. 2 boincer umatlas     15845 Feb  6 16:27 start_atlas.sh
[2026-02-06 17:28:19] -rw-r--r--. 2 boincer umatlas    597953 Feb  6 16:27 input.tar.gz
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas 180365922 Feb  6 17:26 HITS.pool.root.1
[2026-02-06 17:28:19] -rw-------. 1 boincer umatlas    952320 Feb  6 17:28 result.tar.gz
17:28:21 (3539417): run_atlas exited; CPU time 35789.674985
17:28:21 (3539417): called boinc_finish(0)

</stderr_txt>
]]>

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