Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:21:04 (2839946): wrapper (7.7.26015): starting
09:21:04 (2839946): wrapper: running run_atlas (--nthreads 4)
[2026-02-07 09:21:04] Arguments: --nthreads 4
[2026-02-07 09:21:04] Threads: 4
[2026-02-07 09:21:04] Checking for CVMFS
[2026-02-07 09:21:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 09:21:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 09:21:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 09:21:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 09:21:04] 2.9.2.0 2540927 1577 86204 155977 2 49 36264173 36864000 0 130560 0 797271 99.985 64312 15735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 09:21:04] CVMFS is ok
[2026-02-07 09:21:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 09:21:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 09:21:04] Further information can be found at the LHC@home message board.
[2026-02-07 09:21:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 09:21:04] Checking for apptainer binary...
[2026-02-07 09:21:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 09:21:04] Running /usr/bin/apptainer --version
[2026-02-07 09:21:04] apptainer version 1.4.1-1.1
[2026-02-07 09:21:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 09:21:04] thA319
[2026-02-07 09:21:04] apptainer works
[2026-02-07 09:21:05] Set ATHENA_PROC_NUMBER=4
[2026-02-07 09:21:05] Set ATHENA_CORE_NUMBER=4
[2026-02-07 09:21:05] Starting ATLAS job with PandaID=7004225299
[2026-02-07 09:21:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 10:39:28]  *** The last 200 lines of the pilot log: ***
[2026-02-07 10:39:28] 2026-02-07 09:39:01,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 10:39:28] 2026-02-07 09:39:01,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 10:39:28] 2026-02-07 09:39:01,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 10:39:28] 2026-02-07 09:39:01,771 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 10:39:28] 2026-02-07 09:39:01,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 10:39:28] 2026-02-07 09:39:01,771 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 10:39:28] 2026-02-07 09:39:01,772 | INFO     | job 7004225299 has completed (purged errors)
[2026-02-07 10:39:28] 2026-02-07 09:39:01,772 | INFO     | overall cleanup function is called
[2026-02-07 10:39:28] 2026-02-07 09:39:02,778 | INFO     | --- collectZombieJob: --- 10, [2848569]
[2026-02-07 10:39:28] 2026-02-07 09:39:02,779 | INFO     | zombie collector waiting for pid 2848569
[2026-02-07 10:39:28] 2026-02-07 09:39:02,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 10:39:28] 2026-02-07 09:39:02,779 | INFO     | collected zombie processes
[2026-02-07 10:39:28] 2026-02-07 09:39:02,779 | INFO     | will attempt to kill all subprocesses of pid=2848569
[2026-02-07 10:39:28] 2026-02-07 09:39:02,828 | INFO     | process IDs to be killed: [2848569] (in reverse order)
[2026-02-07 10:39:28] 2026-02-07 09:39:02,861 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 10:39:28] 2026-02-07 09:39:02,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 10:39:28] 2026-02-07 09:39:02,863 | INFO     | did not find any defunct processes belonging to 2848569
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | did not find any defunct processes belonging to 2848569
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | ready for new job
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | **************************************
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | **************************************
[2026-02-07 10:39:28] 2026-02-07 09:39:02,865 | INFO     | 
[2026-02-07 10:39:28] 2026-02-07 09:39:02,866 | INFO     | architecture information:
[2026-02-07 10:39:28] 2026-02-07 09:39:02,866 | INFO     | executing command: cat /etc/os-release
[2026-02-07 10:39:28] 2026-02-07 09:39:02,879 | INFO     | cat /etc/os-release:
[2026-02-07 10:39:28] NAME="CentOS Linux"
[2026-02-07 10:39:28] VERSION="7 (Core)"
[2026-02-07 10:39:28] ID="centos"
[2026-02-07 10:39:28] ID_LIKE="rhel fedora"
[2026-02-07 10:39:28] VERSION_ID="7"
[2026-02-07 10:39:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 10:39:28] ANSI_COLOR="0;31"
[2026-02-07 10:39:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 10:39:28] HOME_URL="https://www.centos.org/"
[2026-02-07 10:39:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 10:39:28] 
[2026-02-07 10:39:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 10:39:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 10:39:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 10:39:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 10:39:28] 
[2026-02-07 10:39:28] 2026-02-07 09:39:02,879 | INFO     | **************************************
[2026-02-07 10:39:28] 2026-02-07 09:39:03,382 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 10:39:28] 2026-02-07 09:39:03,398 | INFO     | sufficient remaining disk space (315293171712 B)
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | INFO     | update_server=False
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 10:39:28] 2026-02-07 09:39:03,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 10:39:28] 2026-02-07 09:39:03,454 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 10:39:28] 2026-02-07 09:39:03,454 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 10:39:28] 2026-02-07 09:39:03,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 10:39:28] 2026-02-07 09:39:03,454 | INFO     | will abort loop
[2026-02-07 10:39:28] 2026-02-07 09:39:03,909 | INFO     | all data control threads have been joined
[2026-02-07 10:39:28] 2026-02-07 09:39:04,028 | INFO     | all payload control threads have been joined
[2026-02-07 10:39:28] 2026-02-07 09:39:04,395 | INFO     | all job control threads have been joined
[2026-02-07 10:39:28] 2026-02-07 09:39:04,404 | INFO     | [job] retrieve thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:04,405 | INFO     | [job] queue monitor thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:04,411 | INFO     | [data] copytool_in thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:04,460 | INFO     | [job] job monitor thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:04,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 10:39:28] 2026-02-07 09:39:04,624 | INFO     | [payload] failed_post thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:04,915 | INFO     | [data] control thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,032 | INFO     | [payload] control thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,197 | INFO     | [payload] validate_post thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,399 | INFO     | [job] control thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,582 | INFO     | [job] validate thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,696 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,769 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,841 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:05,879 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 10:39:28] 2026-02-07 09:39:06,558 | INFO     | [data] copytool_out thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:09,886 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:14,431 | INFO     | job.realtimelogging is not enabled
[2026-02-07 10:39:28] 2026-02-07 09:39:15,437 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 10:39:28] 2026-02-07 09:39:22,379 | INFO     | [monitor] cgroup control has ended
[2026-02-07 10:39:28] 2026-02-07 09:39:23,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784966620992)>', '<ExcThread(monitor, started 139784181761792)>']
[2026-02-07 10:39:28] 2026-02-07 09:39:23,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 10:39:28] 2026-02-07 09:39:23,507 | INFO     | [monitor] control thread has ended
[2026-02-07 10:39:28] 2026-02-07 09:39:28,333 | INFO     | all workflow threads have been joined
[2026-02-07 10:39:28] 2026-02-07 09:39:28,333 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 10:39:28] 2026-02-07 09:39:28,333 | INFO     | traces error code: 0
[2026-02-07 10:39:28] 2026-02-07 09:39:28,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 10:39:28] 2026-02-07 09:39:28,400 [wrapper] ==== pilot stdout END ====
[2026-02-07 10:39:28] 2026-02-07 09:39:28,403 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 10:39:28] 2026-02-07 09:39:28,407 [wrapper] pilotpid: 2844064
[2026-02-07 10:39:28] 2026-02-07 09:39:28,411 [wrapper] Pilot exit status: 0
[2026-02-07 10:39:28] 2026-02-07 09:39:28,422 [wrapper] pandaids: 7004225299
[2026-02-07 10:39:28] 2026-02-07 09:39:28,444 [wrapper] cleanup supervisor_pilot 2855185 2844065
[2026-02-07 10:39:28] 2026-02-07 09:39:28,448 [wrapper] Test setup, not cleaning
[2026-02-07 10:39:28] 2026-02-07 09:39:28,451 [wrapper] apfmon messages muted
[2026-02-07 10:39:28] 2026-02-07 09:39:28,455 [wrapper] ==== wrapper stdout END ====
[2026-02-07 10:39:28] 2026-02-07 09:39:28,459 [wrapper] ==== wrapper stderr END ====
[2026-02-07 10:39:28]  *** Error codes and diagnostics ***
[2026-02-07 10:39:28]     "exeErrorCode": 0,
[2026-02-07 10:39:28]     "exeErrorDiag": "",
[2026-02-07 10:39:28]     "pilotErrorCode": 0,
[2026-02-07 10:39:28]     "pilotErrorDiag": "",
[2026-02-07 10:39:28]  *** Listing of results directory ***
[2026-02-07 10:39:28] total 673408
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc    584627 Feb  6 17:59 pilot3.tar.gz
[2026-02-07 10:39:28] -rwx------ 1 boinc boinc     36322 Feb  6 17:59 runpilot2-wrapper.sh
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc      5111 Feb  6 18:00 queuedata.json
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc       100 Feb  7 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 10:39:28] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 09:21 run_atlas
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc       105 Feb  7 09:21 job.xml
[2026-02-07 10:39:28] -rw-r--r-- 2 boinc boinc 491836493 Feb  7 09:21 EVNT.48317889._000290.pool.root.1
[2026-02-07 10:39:28] -rw-r--r-- 2 boinc boinc    597941 Feb  7 09:21 input.tar.gz
[2026-02-07 10:39:28] -rw-r--r-- 2 boinc boinc     15845 Feb  7 09:21 start_atlas.sh
[2026-02-07 10:39:28] drwxrwx--x 2 boinc boinc      4096 Feb  7 09:21 shared
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc         0 Feb  7 09:21 boinc_setup_complete
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc      6369 Feb  7 09:21 init_data.xml
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc         0 Feb  7 09:21 boinc_lockfile
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc      2522 Feb  7 09:21 pandaJob.out
[2026-02-07 10:39:28] -rw------- 1 boinc boinc   1009496 Feb  7 09:21 agis_schedconf.cvmfs.json
[2026-02-07 10:39:28] -rw------- 1 boinc boinc   1513088 Feb  7 09:21 agis_ddmendpoints.agis.ALL.json
[2026-02-07 10:39:28] -rw------- 1 boinc boinc       427 Feb  7 09:21 workernode_map.json
[2026-02-07 10:39:28] drwx------ 5 boinc boinc      4096 Feb  7 09:21 pilot3
[2026-02-07 10:39:28] -rw------- 1 boinc boinc 191878825 Feb  7 10:38 HITS.48317892._015349.pool.root.1
[2026-02-07 10:39:28] -rw------- 1 boinc boinc        95 Feb  7 10:38 pilot_heartbeat.json
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc       530 Feb  7 10:38 boinc_task_state.xml
[2026-02-07 10:39:28] -rw------- 1 boinc boinc      1022 Feb  7 10:38 memory_monitor_summary.json
[2026-02-07 10:39:28] -rw------- 1 boinc boinc    273826 Feb  7 10:38 log.48317892._015349.job.log.tgz.1
[2026-02-07 10:39:28] -rw------- 1 boinc boinc      6318 Feb  7 10:39 heartbeat.json
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc      8192 Feb  7 10:39 boinc_mmap_file
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc        27 Feb  7 10:39 wrapper_checkpoint.txt
[2026-02-07 10:39:28] -rw------- 1 boinc boinc      4810 Feb  7 10:39 pilotlog.txt
[2026-02-07 10:39:28] -rw------- 1 boinc boinc    687156 Feb  7 10:39 log.48317892._015349.job.log.1
[2026-02-07 10:39:28] -rw------- 1 boinc boinc       357 Feb  7 10:39 output.list
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc       620 Feb  7 10:39 runtime_log
[2026-02-07 10:39:28] -rw------- 1 boinc boinc    983040 Feb  7 10:39 result.tar.gz
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc      8896 Feb  7 10:39 runtime_log.err
[2026-02-07 10:39:28] -rw------- 1 boinc boinc       657 Feb  7 10:39 lIeKDmPMe88n9Rq4apOajLDm4fhM0noT9bVooX4SDmzxYKDmsksbPn.diag
[2026-02-07 10:39:28] -rw-r--r-- 1 boinc boinc     11659 Feb  7 10:39 stderr.txt
[2026-02-07 10:39:28] HITS file was successfully produced:
[2026-02-07 10:39:28] -rw------- 1 boinc boinc 191878825 Feb  7 10:38 shared/HITS.pool.root.1
[2026-02-07 10:39:28]  *** Contents of shared directory: ***
[2026-02-07 10:39:28] total 669264
[2026-02-07 10:39:28] -rw-r--r-- 2 boinc boinc 491836493 Feb  7 09:21 ATLAS.root_0
[2026-02-07 10:39:28] -rw-r--r-- 2 boinc boinc    597941 Feb  7 09:21 input.tar.gz
[2026-02-07 10:39:28] -rw-r--r-- 2 boinc boinc     15845 Feb  7 09:21 start_atlas.sh
[2026-02-07 10:39:28] -rw------- 1 boinc boinc 191878825 Feb  7 10:38 HITS.pool.root.1
[2026-02-07 10:39:28] -rw------- 1 boinc boinc    983040 Feb  7 10:39 result.tar.gz
10:39:29 (2839946): run_atlas exited; CPU time 17495.437299
10:39:29 (2839946): called boinc_finish(0)

</stderr_txt>
]]>

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