Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:22:13 (3891973): wrapper (7.7.26015): starting
16:22:13 (3891973): wrapper: running run_atlas (--nthreads 12)
[2026-02-06 16:22:13] Arguments: --nthreads 12
[2026-02-06 16:22:13] Threads: 12
[2026-02-06 16:22:13] Checking for CVMFS
[2026-02-06 16:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-06 16:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-06 16:22:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-06 16:22:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-06 16:22:14] 2.11.5.0 2451234 132480 213184 155965 0 196 24072306 45568000 16485 130560 0 1202885093 99.815 673728298 23260 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-02-06 16:22:14] CVMFS is ok
[2026-02-06 16:22:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-06 16:22:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-06 16:22:14] Further information can be found at the LHC@home message board.
[2026-02-06 16:22:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-06 16:22:14] Checking for apptainer binary...
[2026-02-06 16:22:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-06 16:22:14] Running /usr/bin/apptainer --version
[2026-02-06 16:22:14] apptainer version 1.4.1-1.el9
[2026-02-06 16:22:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-06 16:22:15] wns0065.triumf.lcg
[2026-02-06 16:22:15] apptainer works
[2026-02-06 16:22:15] Set ATHENA_PROC_NUMBER=12
[2026-02-06 16:22:15] Set ATHENA_CORE_NUMBER=12
[2026-02-06 16:22:15] Starting ATLAS job with PandaID=7004731488
[2026-02-06 16:22:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-06 16:27:56]  *** The last 200 lines of the pilot log: ***
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | WARNING  | wrong length of table data, x=[1770423820.0, 1770423881.0], y=[1389.0, 466835.0] (must be same and length>=4)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | could have reported an average CPU frequency of 2587 MHz (4 samples)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | ..............................
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | . Timing measurements:
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | . get job = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . initial setup = 14 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . payload setup = 19 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . stage-in = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . payload execution = 84 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . stage-out = 1 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . log creation = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | ..............................
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7004731488/pilotlog.txt
[2026-02-06 16:27:56] 2026-02-07 00:26:49,257 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-06 16:27:56] - Log from pilotlog.txt -
[2026-02-06 16:27:56] 2026-02-07 00:26:49,026 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7004731488/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | INFO     | extracted standard info from prmon json
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | WARNING  | wrong length of table data, x=[1770423820.0, 1770423881.0], y=[1389.0, 466835.0] (must be same and length>=4)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | could have reported an average CPU frequency of 2587 MHz (4 samples)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | ..............................
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | . Timing measurements:
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | . get job = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . initial setup = 14 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . payload setup = 19 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . stage-in = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . payload execution = 84 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . stage-out = 1 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . log creation = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | ..............................
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7004731488/pilotlog.txt
[2026-02-06 16:27:56] 2026-02-07 00:26:49,257 | WARNING  | 
[2026-02-06 16:27:56] [begin log extracts]
[2026-02-06 16:27:56] - Log from pilotlog.txt -
[2026-02-06 16:27:56] 2026-02-07 00:26:49,026 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7004731488/memory_monitor_summary.json (trf name=prmon)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | INFO     | extracted standard info from prmon json
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | INFO     | extracted standard memory fields from prmon json
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-06 16:27:56] 2026-02-07 00:26:49,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | WARNING  | wrong length of table data, x=[1770423820.0, 1770423881.0], y=[1389.0, 466835.0] (must be same and length>=4)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | could have reported an average CPU frequency of 2587 MHz (4 samples)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | ..............................
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | . Timing measurements:
[2026-02-06 16:27:56] 2026-02-07 00:26:49,042 | INFO     | . get job = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . initial setup = 14 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . payload setup = 19 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . stage-in = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . payload execution = 84 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . stage-out = 1 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | . log creation = 0 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | ..............................
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-06 16:27:56] 2026-02-07 00:26:49,043 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7004731488/pilotlog.txt
[2026-02-06 16:27:56] [end log extracts]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,257 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,258 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | 
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | job summary report
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | --------------------------------------------------
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | PanDA job id: 7004731488
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | task id: 48431080
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-06 16:24:38,423 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-06 16:27:56] 2026-02-07 00:26:49,638 | INFO     | pilot state: failed 
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | transexitcode: 65
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | exeerrorcode: 65
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | exitcode: 65
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | cpuconsumptiontime: 15 s
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | nevents: 0
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | neventsw: 0
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | pid: 3915427
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | pgrp: 3915427
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | corecount: 12
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | event service: False
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | sizes: {0: 2282694, 1: 2283155, 12: 2283155, 107: 2306529, 108: 2306505, 110: 2310825, 112: 2310981, 229: 2311175}
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | --------------------------------------------------
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | 
[2026-02-06 16:27:56] 2026-02-07 00:26:49,639 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-02-06 16:27:56] 2026-02-07 00:26:49,697 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,697 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | job 7004731488 has completed (purged errors)
[2026-02-06 16:27:56] 2026-02-07 00:26:49,699 | INFO     | overall cleanup function is called
[2026-02-06 16:27:56] 2026-02-07 00:26:50,710 | INFO     | --- collectZombieJob: --- 10, [3915427]
[2026-02-06 16:27:56] 2026-02-07 00:26:50,710 | INFO     | zombie collector waiting for pid 3915427
[2026-02-06 16:27:56] 2026-02-07 00:26:50,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-06 16:27:56] 2026-02-07 00:26:50,710 | INFO     | collected zombie processes
[2026-02-06 16:27:56] 2026-02-07 00:26:50,710 | INFO     | will attempt to kill all subprocesses of pid=3915427
[2026-02-06 16:27:56] 2026-02-07 00:26:51,459 | INFO     | process IDs to be killed: [3915427] (in reverse order)
[2026-02-06 16:27:56] 2026-02-07 00:26:51,804 | WARNING  | found no corresponding commands to process id(s)
[2026-02-06 16:27:56] 2026-02-07 00:26:51,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-06 16:27:56] 2026-02-07 00:26:51,840 | INFO     | did not find any defunct processes belonging to 3915427
[2026-02-06 16:27:56] 2026-02-07 00:26:51,891 | INFO     | did not find any defunct processes belonging to 3915427
[2026-02-06 16:27:56] 2026-02-07 00:26:51,891 | INFO     | ready for new job
[2026-02-06 16:27:56] 2026-02-07 00:26:51,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-06 16:27:56] 2026-02-07 00:26:51,892 | INFO     | **************************************
[2026-02-06 16:27:56] 2026-02-07 00:26:51,920 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-06 16:27:56] 2026-02-07 00:26:51,920 | INFO     | **************************************
[2026-02-06 16:27:56] 2026-02-07 00:26:51,920 | INFO     | 
[2026-02-06 16:27:56] 2026-02-07 00:26:51,922 | INFO     | architecture information:
[2026-02-06 16:27:56] 2026-02-07 00:26:51,944 | INFO     | executing command: cat /etc/os-release
[2026-02-06 16:27:56] 2026-02-07 00:26:51,991 | INFO     | cat /etc/os-release:
[2026-02-06 16:27:56] NAME="CentOS Linux"
[2026-02-06 16:27:56] VERSION="7 (Core)"
[2026-02-06 16:27:56] ID="centos"
[2026-02-06 16:27:56] ID_LIKE="rhel fedora"
[2026-02-06 16:27:56] VERSION_ID="7"
[2026-02-06 16:27:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-06 16:27:56] ANSI_COLOR="0;31"
[2026-02-06 16:27:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-06 16:27:56] HOME_URL="https://www.centos.org/"
[2026-02-06 16:27:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-06 16:27:56] 
[2026-02-06 16:27:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-06 16:27:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-06 16:27:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-06 16:27:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-06 16:27:56] 
[2026-02-06 16:27:56] 2026-02-07 00:26:51,991 | INFO     | **************************************
[2026-02-06 16:27:56] 2026-02-07 00:26:52,495 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-02-06 16:27:56] 2026-02-07 00:26:52,512 | INFO     | sufficient remaining disk space (2126866546688 B)
[2026-02-06 16:27:56] 2026-02-07 00:26:52,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-06 16:27:56] 2026-02-07 00:26:52,512 | INFO     | current server update state: UPDATING_FINAL
[2026-02-06 16:27:56] 2026-02-07 00:26:52,513 | INFO     | update_server=False
[2026-02-06 16:27:56] 2026-02-07 00:26:52,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-06 16:27:56] 2026-02-07 00:26:52,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-06 16:27:56] 2026-02-07 00:26:52,513 | INFO     | aborting loop
[2026-02-06 16:27:56] 2026-02-07 00:26:52,514 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-06 16:27:56] 2026-02-07 00:26:52,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-06 16:27:56] 2026-02-07 00:26:52,810 | INFO     | all job control threads have been joined
[2026-02-06 16:27:56] 2026-02-07 00:26:52,985 | INFO     | all data control threads have been joined
[2026-02-06 16:27:56] 2026-02-07 00:26:53,519 | INFO     | [job] retrieve thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:53,519 | INFO     | [job] job monitor thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:53,531 | INFO     | [job] create_data_payload thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:53,816 | INFO     | [job] control thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:53,830 | INFO     | all payload control threads have been joined
[2026-02-06 16:27:56] 2026-02-07 00:26:53,971 | INFO     | [payload] failed_post thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:53,995 | INFO     | [data] control thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,240 | INFO     | [payload] validate_pre thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,334 | INFO     | [data] copytool_in thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,521 | INFO     | [data] copytool_out thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,556 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-06 16:27:56] 2026-02-07 00:26:54,803 | INFO     | [payload] validate_post thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,836 | INFO     | [payload] control thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,840 | INFO     | [payload] execute_payloads thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:54,956 | INFO     | [job] validate thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:55,663 | INFO     | [job] queue monitor thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:26:56,527 | INFO     | [data] queue_monitor thread has finished
[2026-02-06 16:27:56] 2026-02-07 00:27:22,373 | INFO     | PID=3896442 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-06 16:27:56] 2026-02-07 00:27:22,373 | INFO     | .. there are 28 such processes running
[2026-02-06 16:27:56] 2026-02-07 00:27:22,373 | INFO     | found 0 job(s) in 20 queues
[2026-02-06 16:27:56] 2026-02-07 00:27:22,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-06 16:27:56] 2026-02-07 00:27:22,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-06 16:27:56] 2026-02-07 00:27:48,784 | INFO     | [monitor] cgroup control has ended
[2026-02-06 16:27:56] 2026-02-07 00:27:50,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067928713024)>', '<ExcThread(monitor, started 140067364382464)>']
[2026-02-06 16:27:56] 2026-02-07 00:27:51,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-06 16:27:56] 2026-02-07 00:27:51,544 | INFO     | [monitor] control thread has ended
[2026-02-06 16:27:56] 2026-02-07 00:27:55,722 | INFO     | all workflow threads have been joined
[2026-02-06 16:27:56] 2026-02-07 00:27:55,722 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-06 16:27:56] 2026-02-07 00:27:55,722 | INFO     | traces error code: 0
[2026-02-06 16:27:56] 2026-02-07 00:27:55,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-06 16:27:56] 2026-02-07 00:27:55,885 [wrapper] ==== pilot stdout END ====
[2026-02-06 16:27:56] 2026-02-07 00:27:55,887 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-06 16:27:56] 2026-02-07 00:27:55,889 [wrapper] pilotpid: 3896442
[2026-02-06 16:27:56] 2026-02-07 00:27:55,890 [wrapper] Pilot exit status: 0
[2026-02-06 16:27:56] 2026-02-07 00:27:55,899 [wrapper] pandaids: 7004731488
[2026-02-06 16:27:56] 2026-02-07 00:27:55,946 [wrapper] cleanup supervisor_pilot 3896461 3896443
[2026-02-06 16:27:56] 2026-02-07 00:27:55,948 [wrapper] Test setup, not cleaning
[2026-02-06 16:27:56] 2026-02-07 00:27:55,950 [wrapper] apfmon messages muted
[2026-02-06 16:27:56] 2026-02-07 00:27:55,953 [wrapper] ==== wrapper stdout END ====
[2026-02-06 16:27:56] 2026-02-07 00:27:55,956 [wrapper] ==== wrapper stderr END ====
[2026-02-06 16:27:56]  *** Error codes and diagnostics ***
[2026-02-06 16:27:56]     "exeErrorCode": 65,
[2026-02-06 16:27:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-02-06 16:27:56]     "pilotErrorCode": 1305,
[2026-02-06 16:27:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-02-06 16:27:56]  *** Listing of results directory ***
[2026-02-06 16:27:56] total 639060
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc      5111 Feb  6 12:57 queuedata.json
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc    584627 Feb  6 12:57 pilot3.tar.gz
[2026-02-06 16:27:56] -rwx------. 1 boinc boinc     36322 Feb  6 12:58 runpilot2-wrapper.sh
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc       100 Feb  6 16:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-06 16:27:56] -rwxr-xr-x. 1 boinc boinc      7986 Feb  6 16:22 run_atlas
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc       105 Feb  6 16:22 job.xml
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc      6594 Feb  6 16:22 init_data.xml
[2026-02-06 16:27:56] -rw-r--r--. 2 boinc boinc 650233198 Feb  6 16:22 EVNT.48431078._000159.pool.root.1
[2026-02-06 16:27:56] -rw-r--r--. 2 boinc boinc     15845 Feb  6 16:22 start_atlas.sh
[2026-02-06 16:27:56] drwxrwx--x. 2 boinc boinc      4096 Feb  6 16:22 shared
[2026-02-06 16:27:56] -rw-r--r--. 2 boinc boinc    597967 Feb  6 16:22 input.tar.gz
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc         0 Feb  6 16:22 boinc_lockfile
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc      2557 Feb  6 16:22 pandaJob.out
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc   1009520 Feb  6 16:22 agis_schedconf.cvmfs.json
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc   1513088 Feb  6 16:22 agis_ddmendpoints.agis.ALL.json
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc       444 Feb  6 16:22 workernode_map.json
[2026-02-06 16:27:56] drwx------. 5 boinc boinc      4096 Feb  6 16:22 pilot3
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc       524 Feb  6 16:24 boinc_task_state.xml
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc      1010 Feb  6 16:24 memory_monitor_summary.json
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc     21894 Feb  6 16:24 log.48431080._012667.job.log.tgz.1
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc        95 Feb  6 16:26 pilot_heartbeat.json
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc      7062 Feb  6 16:26 heartbeat.json
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc        23 Feb  6 16:27 wrapper_checkpoint.txt
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc      4819 Feb  6 16:27 pilotlog.txt
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc     89960 Feb  6 16:27 log.48431080._012667.job.log.1
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc      8192 Feb  6 16:27 boinc_mmap_file
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc       188 Feb  6 16:27 output.list
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc       620 Feb  6 16:27 runtime_log
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc    133120 Feb  6 16:27 result.tar.gz
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc      8635 Feb  6 16:27 runtime_log.err
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc       648 Feb  6 16:27 dZoLDmf5h88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0jZKDmuF8ZXo.diag
[2026-02-06 16:27:56] -rw-r--r--. 1 boinc boinc     21870 Feb  6 16:27 stderr.txt
[2026-02-06 16:27:56] No HITS result produced
[2026-02-06 16:27:56]  *** Contents of shared directory: ***
[2026-02-06 16:27:56] total 635732
[2026-02-06 16:27:56] -rw-r--r--. 2 boinc boinc 650233198 Feb  6 16:22 ATLAS.root_0
[2026-02-06 16:27:56] -rw-r--r--. 2 boinc boinc     15845 Feb  6 16:22 start_atlas.sh
[2026-02-06 16:27:56] -rw-r--r--. 2 boinc boinc    597967 Feb  6 16:22 input.tar.gz
[2026-02-06 16:27:56] -rw-------. 1 boinc boinc    133120 Feb  6 16:27 result.tar.gz
16:27:57 (3891973): run_atlas exited; CPU time 21.888034
16:27:57 (3891973): called boinc_finish(0)

</stderr_txt>
]]>

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