Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:25:53 (3020185): wrapper (7.7.26015): starting
05:25:53 (3020185): wrapper: running run_atlas (--nthreads 2)
[2026-02-07 05:25:53] Arguments: --nthreads 2
[2026-02-07 05:25:53] Threads: 2
[2026-02-07 05:25:53] Checking for CVMFS
[2026-02-07 05:25:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 05:25:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 05:25:54] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 05:25:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 05:25:54] 2.9.2.0 2908847 1159 55796 155971 3 49 22327468 36864001 0 130560 0 327350 99.971 50378 7407 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 05:25:54] CVMFS is ok
[2026-02-07 05:25:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 05:25:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 05:25:54] Further information can be found at the LHC@home message board.
[2026-02-07 05:25:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 05:25:54] Checking for apptainer binary...
[2026-02-07 05:25:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 05:25:54] Running /usr/bin/apptainer --version
[2026-02-07 05:25:54] apptainer version 1.4.1-1.1
[2026-02-07 05:25:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 05:25:54] madmaxA277a
[2026-02-07 05:25:54] apptainer works
[2026-02-07 05:25:54] Set ATHENA_PROC_NUMBER=2
[2026-02-07 05:25:54] Set ATHENA_CORE_NUMBER=2
[2026-02-07 05:25:54] Starting ATLAS job with PandaID=7004223906
[2026-02-07 05:25:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 07:42:34]  *** The last 200 lines of the pilot log: ***
[2026-02-07 07:42:34] 2026-02-07 06:41:41,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,882 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 07:42:34] 2026-02-07 06:41:41,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,882 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 07:42:34] 2026-02-07 06:41:41,882 | INFO     | job 7004223906 has completed (purged errors)
[2026-02-07 07:42:34] 2026-02-07 06:41:41,883 | INFO     | overall cleanup function is called
[2026-02-07 07:42:34] 2026-02-07 06:41:42,892 | INFO     | --- collectZombieJob: --- 10, [3028619]
[2026-02-07 07:42:34] 2026-02-07 06:41:42,892 | INFO     | zombie collector waiting for pid 3028619
[2026-02-07 07:42:34] 2026-02-07 06:41:42,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 07:42:34] 2026-02-07 06:41:42,893 | INFO     | collected zombie processes
[2026-02-07 07:42:34] 2026-02-07 06:41:42,893 | INFO     | will attempt to kill all subprocesses of pid=3028619
[2026-02-07 07:42:34] 2026-02-07 06:41:42,924 | INFO     | process IDs to be killed: [3028619] (in reverse order)
[2026-02-07 07:42:34] 2026-02-07 06:41:42,944 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 07:42:34] 2026-02-07 06:41:42,944 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 07:42:34] 2026-02-07 06:41:42,944 | INFO     | did not find any defunct processes belonging to 3028619
[2026-02-07 07:42:34] 2026-02-07 06:41:42,945 | INFO     | did not find any defunct processes belonging to 3028619
[2026-02-07 07:42:34] 2026-02-07 06:41:42,945 | INFO     | ready for new job
[2026-02-07 07:42:34] 2026-02-07 06:41:42,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 07:42:34] 2026-02-07 06:41:42,946 | INFO     | **************************************
[2026-02-07 07:42:34] 2026-02-07 06:41:42,946 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 07:42:34] 2026-02-07 06:41:42,946 | INFO     | **************************************
[2026-02-07 07:42:34] 2026-02-07 06:41:42,946 | INFO     | 
[2026-02-07 07:42:34] 2026-02-07 06:41:42,946 | INFO     | architecture information:
[2026-02-07 07:42:34] 2026-02-07 06:41:42,946 | INFO     | executing command: cat /etc/os-release
[2026-02-07 07:42:34] 2026-02-07 06:41:42,954 | INFO     | cat /etc/os-release:
[2026-02-07 07:42:34] NAME="CentOS Linux"
[2026-02-07 07:42:34] VERSION="7 (Core)"
[2026-02-07 07:42:34] ID="centos"
[2026-02-07 07:42:34] ID_LIKE="rhel fedora"
[2026-02-07 07:42:34] VERSION_ID="7"
[2026-02-07 07:42:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 07:42:34] ANSI_COLOR="0;31"
[2026-02-07 07:42:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 07:42:34] HOME_URL="https://www.centos.org/"
[2026-02-07 07:42:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 07:42:34] 
[2026-02-07 07:42:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 07:42:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 07:42:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 07:42:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 07:42:34] 
[2026-02-07 07:42:34] 2026-02-07 06:41:42,954 | INFO     | **************************************
[2026-02-07 07:42:34] 2026-02-07 06:41:43,457 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | INFO     | sufficient remaining disk space (493884538880 B)
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | INFO     | update_server=False
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 07:42:34] 2026-02-07 06:41:43,469 | INFO     | aborting loop
[2026-02-07 07:42:34] 2026-02-07 06:41:44,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 07:42:34] 2026-02-07 06:41:44,145 | INFO     | all payload control threads have been joined
[2026-02-07 07:42:34] 2026-02-07 06:41:44,332 | INFO     | all job control threads have been joined
[2026-02-07 07:42:34] 2026-02-07 06:41:44,475 | INFO     | [job] retrieve thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:44,476 | INFO     | [job] queue monitor thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:44,476 | INFO     | [job] job monitor thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:44,500 | INFO     | all data control threads have been joined
[2026-02-07 07:42:34] 2026-02-07 06:41:44,525 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,080 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,151 | INFO     | [payload] control thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,337 | INFO     | [job] control thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,404 | INFO     | [payload] validate_post thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,506 | INFO     | [data] control thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,698 | INFO     | [job] validate thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,902 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,908 | INFO     | [data] copytool_in thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,971 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:45,986 | INFO     | [payload] failed_post thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:46,135 | INFO     | [data] copytool_out thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:41:47,476 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 07:42:34] 2026-02-07 06:42:12,959 | INFO     | PID=3024211 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 07:42:34] 2026-02-07 06:42:12,959 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 07:42:34] 2026-02-07 06:42:12,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 07:42:34] 2026-02-07 06:42:12,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 07:42:34] 2026-02-07 06:42:27,511 | INFO     | [monitor] cgroup control has ended
[2026-02-07 07:42:34] 2026-02-07 06:42:29,500 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695410669376)>', '<ExcThread(monitor, started 139694910187264)>']
[2026-02-07 07:42:34] 2026-02-07 06:42:30,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 07:42:34] 2026-02-07 06:42:30,047 | INFO     | [monitor] control thread has ended
[2026-02-07 07:42:34] 2026-02-07 06:42:34,526 | INFO     | all workflow threads have been joined
[2026-02-07 07:42:34] 2026-02-07 06:42:34,527 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 07:42:34] 2026-02-07 06:42:34,528 | INFO     | traces error code: 0
[2026-02-07 07:42:34] 2026-02-07 06:42:34,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 07:42:34] 2026-02-07 06:42:34,571 [wrapper] ==== pilot stdout END ====
[2026-02-07 07:42:34] 2026-02-07 06:42:34,574 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 07:42:34] 2026-02-07 06:42:34,576 [wrapper] pilotpid: 3024211
[2026-02-07 07:42:34] 2026-02-07 06:42:34,578 [wrapper] Pilot exit status: 0
[2026-02-07 07:42:34] 2026-02-07 06:42:34,583 [wrapper] pandaids: 7004223906
[2026-02-07 07:42:34] 2026-02-07 06:42:34,595 [wrapper] cleanup supervisor_pilot 3033686 3024212
[2026-02-07 07:42:34] 2026-02-07 06:42:34,597 [wrapper] Test setup, not cleaning
[2026-02-07 07:42:34] 2026-02-07 06:42:34,599 [wrapper] apfmon messages muted
[2026-02-07 07:42:34] 2026-02-07 06:42:34,601 [wrapper] ==== wrapper stdout END ====
[2026-02-07 07:42:34] 2026-02-07 06:42:34,603 [wrapper] ==== wrapper stderr END ====
[2026-02-07 07:42:34]  *** Error codes and diagnostics ***
[2026-02-07 07:42:34]     "exeErrorCode": 0,
[2026-02-07 07:42:34]     "exeErrorDiag": "",
[2026-02-07 07:42:34]     "pilotErrorCode": 0,
[2026-02-07 07:42:34]     "pilotErrorDiag": "",
[2026-02-07 07:42:34]  *** Listing of results directory ***
[2026-02-07 07:42:34] total 666872
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc      5111 Feb  6 17:59 queuedata.json
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc    584627 Feb  6 17:59 pilot3.tar.gz
[2026-02-07 07:42:34] -rwx------ 1 boinc boinc     36322 Feb  6 17:59 runpilot2-wrapper.sh
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc       100 Feb  7 05:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 07:42:34] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 05:25 run_atlas
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc       105 Feb  7 05:25 job.xml
[2026-02-07 07:42:34] -rw-r--r-- 2 boinc boinc 492687809 Feb  7 05:25 EVNT.48317889._000280.pool.root.1
[2026-02-07 07:42:34] -rw-r--r-- 2 boinc boinc    597937 Feb  7 05:25 input.tar.gz
[2026-02-07 07:42:34] -rw-r--r-- 2 boinc boinc     15845 Feb  7 05:25 start_atlas.sh
[2026-02-07 07:42:34] drwxrwx--x 2 boinc boinc      4096 Feb  7 05:25 shared
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc         0 Feb  7 05:25 boinc_setup_complete
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc      6210 Feb  7 05:25 init_data.xml
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc         0 Feb  7 05:25 boinc_lockfile
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc      2523 Feb  7 05:25 pandaJob.out
[2026-02-07 07:42:34] -rw------- 1 boinc boinc   1009504 Feb  7 05:26 agis_schedconf.cvmfs.json
[2026-02-07 07:42:34] -rw------- 1 boinc boinc   1513088 Feb  7 05:26 agis_ddmendpoints.agis.ALL.json
[2026-02-07 07:42:34] -rw------- 1 boinc boinc       430 Feb  7 05:26 workernode_map.json
[2026-02-07 07:42:34] drwx------ 5 boinc boinc      4096 Feb  7 05:26 pilot3
[2026-02-07 07:42:34] -rw------- 1 boinc boinc 183304526 Feb  7 07:41 HITS.48317892._014867.pool.root.1
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc       530 Feb  7 07:41 boinc_task_state.xml
[2026-02-07 07:42:34] -rw------- 1 boinc boinc      1019 Feb  7 07:41 memory_monitor_summary.json
[2026-02-07 07:42:34] -rw------- 1 boinc boinc    313860 Feb  7 07:41 log.48317892._014867.job.log.tgz.1
[2026-02-07 07:42:34] -rw------- 1 boinc boinc      6323 Feb  7 07:41 heartbeat.json
[2026-02-07 07:42:34] -rw------- 1 boinc boinc        95 Feb  7 07:42 pilot_heartbeat.json
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc      8192 Feb  7 07:42 boinc_mmap_file
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc        27 Feb  7 07:42 wrapper_checkpoint.txt
[2026-02-07 07:42:34] -rw------- 1 boinc boinc      4748 Feb  7 07:42 pilotlog.txt
[2026-02-07 07:42:34] -rw------- 1 boinc boinc   1162482 Feb  7 07:42 log.48317892._014867.job.log.1
[2026-02-07 07:42:34] -rw------- 1 boinc boinc       357 Feb  7 07:42 output.list
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc       620 Feb  7 07:42 runtime_log
[2026-02-07 07:42:34] -rw------- 1 boinc boinc   1495040 Feb  7 07:42 result.tar.gz
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc      8921 Feb  7 07:42 runtime_log.err
[2026-02-07 07:42:34] -rw------- 1 boinc boinc       662 Feb  7 07:42 14CODmvLe88n9Rq4apOajLDm4fhM0noT9bVooX4SDmIuYKDmq50ZTm.diag
[2026-02-07 07:42:34] -rw-r--r-- 1 boinc boinc     11724 Feb  7 07:42 stderr.txt
[2026-02-07 07:42:34] HITS file was successfully produced:
[2026-02-07 07:42:34] -rw------- 1 boinc boinc 183304526 Feb  7 07:41 shared/HITS.pool.root.1
[2026-02-07 07:42:34]  *** Contents of shared directory: ***
[2026-02-07 07:42:34] total 662224
[2026-02-07 07:42:34] -rw-r--r-- 2 boinc boinc 492687809 Feb  7 05:25 ATLAS.root_0
[2026-02-07 07:42:34] -rw-r--r-- 2 boinc boinc    597937 Feb  7 05:25 input.tar.gz
[2026-02-07 07:42:34] -rw-r--r-- 2 boinc boinc     15845 Feb  7 05:25 start_atlas.sh
[2026-02-07 07:42:34] -rw------- 1 boinc boinc 183304526 Feb  7 07:41 HITS.pool.root.1
[2026-02-07 07:42:34] -rw------- 1 boinc boinc   1495040 Feb  7 07:42 result.tar.gz
07:42:36 (3020185): run_atlas exited; CPU time 15851.007723
07:42:36 (3020185): called boinc_finish(0)

</stderr_txt>
]]>

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