Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:16:49 (18113): wrapper (7.7.26015): starting
07:16:49 (18113): wrapper: running run_atlas (--nthreads 8)
[2026-02-07 07:16:49] Arguments: --nthreads 8
[2026-02-07 07:16:49] Threads: 8
[2026-02-07 07:16:49] Checking for CVMFS
[2026-02-07 07:16:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 07:16:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 07:16:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 07:16:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 07:16:50] 2.11.2.0 21086 76802 131668 155974 1 92 18191676 25165825 687 130560 0 25605879 99.825 17877500 2796 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-07 07:16:50] CVMFS is ok
[2026-02-07 07:16:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 07:16:50] Checking for apptainer binary...
[2026-02-07 07:16:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 07:16:50] Running /usr/bin/apptainer --version
[2026-02-07 07:16:50] apptainer version 1.3.2-1.el7
[2026-02-07 07:16:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 07:16:52] cg-vwn408.simple-grid.lan
[2026-02-07 07:16:52] apptainer works
[2026-02-07 07:16:52] Set ATHENA_PROC_NUMBER=8
[2026-02-07 07:16:52] Set ATHENA_CORE_NUMBER=8
[2026-02-07 07:16:52] Starting ATLAS job with PandaID=7004058172
[2026-02-07 07:16:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 11:56:01]  *** The last 200 lines of the pilot log: ***
[2026-02-07 11:56:01] 2026-02-07 10:54:57,215 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7004058172/memory_monitor_summary.json (trf name=prmon)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,216 | INFO     | extracted standard info from prmon json
[2026-02-07 11:56:01] 2026-02-07 10:54:57,216 | INFO     | extracted standard memory fields from prmon json
[2026-02-07 11:56:01] 2026-02-07 10:54:57,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-07 11:56:01] 2026-02-07 10:54:57,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-07 11:56:01] 2026-02-07 10:54:57,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-07 11:56:01] 2026-02-07 10:54:57,223 | INFO     | fitting pss+swap vs Time
[2026-02-07 11:56:01] 2026-02-07 10:54:57,224 | INFO     | sum of square deviations: 6309000152.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,226 | INFO     | sum of deviations: -35905770346.00001
[2026-02-07 11:56:01] 2026-02-07 10:54:57,227 | INFO     | mean x: 1770453356.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,227 | INFO     | mean y: 2523141.04029304
[2026-02-07 11:56:01] 2026-02-07 10:54:57,227 | INFO     | intersect: 10078524104.313213
[2026-02-07 11:56:01] 2026-02-07 10:54:57,228 | INFO     | chi2: 2.5457562880358524
[2026-02-07 11:56:01] 2026-02-07 10:54:57,228 | INFO     | sum of square deviations: 5968658887.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,231 | INFO     | sum of deviations: -16979984125.499994
[2026-02-07 11:56:01] 2026-02-07 10:54:57,231 | INFO     | mean x: 1770453203.5
[2026-02-07 11:56:01] 2026-02-07 10:54:57,231 | INFO     | mean y: 2531500.5708955224
[2026-02-07 11:56:01] 2026-02-07 10:54:57,232 | INFO     | intersect: 5039218612.284976
[2026-02-07 11:56:01] 2026-02-07 10:54:57,232 | INFO     | chi2: 1.7786535243823414
[2026-02-07 11:56:01] 2026-02-07 10:54:57,232 | INFO     | current chi2=1.7786535243823414 (change=30.132608029237552 %)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,233 | INFO     | sum of square deviations: 5640782972.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,235 | INFO     | sum of deviations: -16514305092.999977
[2026-02-07 11:56:01] 2026-02-07 10:54:57,236 | INFO     | mean x: 1770453051.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,236 | INFO     | mean y: 2531717.1901140683
[2026-02-07 11:56:01] 2026-02-07 10:54:57,236 | INFO     | intersect: 5185819566.089586
[2026-02-07 11:56:01] 2026-02-07 10:54:57,236 | INFO     | chi2: 1.777965741206967
[2026-02-07 11:56:01] 2026-02-07 10:54:57,237 | INFO     | current chi2=1.777965741206967 (change=0.038668755097386126 %)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,237 | INFO     | right removable region: 262
[2026-02-07 11:56:01] 2026-02-07 10:54:57,237 | INFO     | sum of square deviations: 5968658887.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,240 | INFO     | sum of deviations: -78930843067.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,240 | INFO     | mean x: 1770453508.5
[2026-02-07 11:56:01] 2026-02-07 10:54:57,240 | INFO     | mean y: 2542263.8880597013
[2026-02-07 11:56:01] 2026-02-07 10:54:57,240 | INFO     | intersect: 23415404463.334618
[2026-02-07 11:56:01] 2026-02-07 10:54:57,241 | INFO     | chi2: 1.047980589454526
[2026-02-07 11:56:01] 2026-02-07 10:54:57,241 | INFO     | current chi2=1.047980589454526 (change=58.834213849155105 %)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,242 | INFO     | sum of square deviations: 5640782972.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,244 | INFO     | sum of deviations: -81591601152.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,244 | INFO     | mean x: 1770453661.0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,245 | INFO     | mean y: 2543485.300380228
[2026-02-07 11:56:01] 2026-02-07 10:54:57,245 | INFO     | intersect: 25611426096.714245
[2026-02-07 11:56:01] 2026-02-07 10:54:57,245 | INFO     | chi2: 1.019855288139684
[2026-02-07 11:56:01] 2026-02-07 10:54:57,245 | INFO     | current chi2=1.019855288139684 (change=2.683761664849264 %)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,246 | INFO     | left removable region: 20
[2026-02-07 11:56:01] 2026-02-07 10:54:57,246 | INFO     | sum of square deviations: 4394577280.5
[2026-02-07 11:56:01] 2026-02-07 10:54:57,248 | INFO     | sum of deviations: -45366594137.99999
[2026-02-07 11:56:01] 2026-02-07 10:54:57,249 | INFO     | mean x: 1770453630.5
[2026-02-07 11:56:01] 2026-02-07 10:54:57,249 | INFO     | mean y: 2544918.661157025
[2026-02-07 11:56:01] 2026-02-07 10:54:57,249 | INFO     | intersect: 18279490838.224922
[2026-02-07 11:56:01] 2026-02-07 10:54:57,249 | INFO     | chi2: 0.2085507765256285
[2026-02-07 11:56:01] 2026-02-07 10:54:57,250 | INFO     | current memory leak: -10.32 B/s (using 242 data points, chi2=0.21)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,250 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | ..............................
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . Timing measurements:
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . get job = 0 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . initial setup = 9 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . payload setup = 9 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . stage-in = 0 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . payload execution = 16634 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . stage-out = 3 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,251 | INFO     | . log creation = 1 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,252 | INFO     | ..............................
[2026-02-07 11:56:01] 2026-02-07 10:54:57,427 | INFO     | time since job start (16656s) is within the limit (349056.0s)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,430 | INFO     | 
[2026-02-07 11:56:01] 2026-02-07 10:54:57,430 | INFO     | job summary report
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | --------------------------------------------------
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | PanDA job id: 7004058172
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | task id: 48317952
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | errors: (none)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | pilot state: finished 
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | transexitcode: 0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,431 | INFO     | exeerrorcode: 0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | exeerrordiag: 
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | exitcode: 0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | exitmsg: OK
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | cpuconsumptiontime: 63785 s
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | nevents: 400
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | neventsw: 0
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | pid: 26475
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | pgrp: 26475
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | corecount: 8
[2026-02-07 11:56:01] 2026-02-07 10:54:57,432 | INFO     | event service: False
[2026-02-07 11:56:01] 2026-02-07 10:54:57,433 | INFO     | sizes: {0: 2282603, 1: 2283120, 2: 2283120, 16647: 2315079, 16652: 2324077, 16653: 2324133, 16655: 2324455}
[2026-02-07 11:56:01] 2026-02-07 10:54:57,433 | INFO     | --------------------------------------------------
[2026-02-07 11:56:01] 2026-02-07 10:54:57,433 | INFO     | 
[2026-02-07 11:56:01] 2026-02-07 10:54:57,433 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-02-07 11:56:01] 2026-02-07 10:54:57,954 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,954 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,954 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,954 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 11:56:01] 2026-02-07 10:54:57,956 | INFO     | job 7004058172 has completed (purged errors)
[2026-02-07 11:56:01] 2026-02-07 10:54:57,957 | INFO     | overall cleanup function is called
[2026-02-07 11:56:01] 2026-02-07 10:54:58,966 | INFO     | --- collectZombieJob: --- 10, [26475]
[2026-02-07 11:56:01] 2026-02-07 10:54:58,966 | INFO     | zombie collector waiting for pid 26475
[2026-02-07 11:56:01] 2026-02-07 10:54:58,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 11:56:01] 2026-02-07 10:54:58,967 | INFO     | collected zombie processes
[2026-02-07 11:56:01] 2026-02-07 10:54:58,967 | INFO     | will attempt to kill all subprocesses of pid=26475
[2026-02-07 11:56:01] 2026-02-07 10:54:59,064 | INFO     | process IDs to be killed: [26475] (in reverse order)
[2026-02-07 11:56:01] 2026-02-07 10:55:00,023 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 11:56:01] 2026-02-07 10:55:00,023 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 11:56:01] 2026-02-07 10:55:00,025 | INFO     | did not find any defunct processes belonging to 26475
[2026-02-07 11:56:01] 2026-02-07 10:55:00,027 | INFO     | did not find any defunct processes belonging to 26475
[2026-02-07 11:56:01] 2026-02-07 10:55:00,027 | INFO     | ready for new job
[2026-02-07 11:56:01] 2026-02-07 10:55:00,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 11:56:01] 2026-02-07 10:55:00,030 | INFO     | **************************************
[2026-02-07 11:56:01] 2026-02-07 10:55:00,030 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 11:56:01] 2026-02-07 10:55:00,030 | INFO     | **************************************
[2026-02-07 11:56:01] 2026-02-07 10:55:00,030 | INFO     | 
[2026-02-07 11:56:01] 2026-02-07 10:55:00,031 | INFO     | pilot is running in a VM
[2026-02-07 11:56:01] 2026-02-07 10:55:00,031 | INFO     | architecture information:
[2026-02-07 11:56:01] 2026-02-07 10:55:00,041 | INFO     | executing command: cat /etc/os-release
[2026-02-07 11:56:01] 2026-02-07 10:55:00,290 | INFO     | cat /etc/os-release:
[2026-02-07 11:56:01] NAME="CentOS Linux"
[2026-02-07 11:56:01] VERSION="7 (Core)"
[2026-02-07 11:56:01] ID="centos"
[2026-02-07 11:56:01] ID_LIKE="rhel fedora"
[2026-02-07 11:56:01] VERSION_ID="7"
[2026-02-07 11:56:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 11:56:01] ANSI_COLOR="0;31"
[2026-02-07 11:56:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 11:56:01] HOME_URL="https://www.centos.org/"
[2026-02-07 11:56:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 11:56:01] 
[2026-02-07 11:56:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 11:56:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 11:56:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 11:56:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 11:56:01] 
[2026-02-07 11:56:01] 2026-02-07 10:55:00,290 | INFO     | **************************************
[2026-02-07 11:56:01] 2026-02-07 10:55:00,793 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-02-07 11:56:01] 2026-02-07 10:55:01,122 | INFO     | sufficient remaining disk space (494551433216 B)
[2026-02-07 11:56:01] 2026-02-07 10:55:01,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 11:56:01] 2026-02-07 10:55:01,122 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 11:56:01] 2026-02-07 10:55:01,122 | INFO     | update_server=False
[2026-02-07 11:56:01] 2026-02-07 10:55:01,123 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 11:56:01] 2026-02-07 10:55:01,153 | INFO     | all job control threads have been joined
[2026-02-07 11:56:01] 2026-02-07 10:55:01,177 | INFO     | all data control threads have been joined
[2026-02-07 11:56:01] 2026-02-07 10:55:01,450 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 11:56:01] 2026-02-07 10:55:01,451 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 11:56:01] 2026-02-07 10:55:01,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 11:56:01] 2026-02-07 10:55:01,451 | INFO     | will abort loop
[2026-02-07 11:56:01] 2026-02-07 10:55:01,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 11:56:01] 2026-02-07 10:55:01,951 | INFO     | all payload control threads have been joined
[2026-02-07 11:56:01] 2026-02-07 10:55:02,128 | INFO     | [job] retrieve thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,159 | INFO     | [job] control thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,183 | INFO     | [data] control thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,269 | INFO     | [payload] validate_post thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,327 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 11:56:01] 2026-02-07 10:55:02,410 | INFO     | [job] validate thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 11:56:01] 2026-02-07 10:55:02,457 | INFO     | [job] job monitor thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,490 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,770 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,807 | INFO     | [data] copytool_in thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,871 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:02,957 | INFO     | [payload] control thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:03,316 | INFO     | [payload] failed_post thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:03,418 | INFO     | [job] queue monitor thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:04,415 | INFO     | [data] copytool_out thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:05,734 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 11:56:01] 2026-02-07 10:55:30,577 | INFO     | PID=22026 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-07 11:56:01] 2026-02-07 10:55:30,577 | INFO     | .. there are 2 such processes running
[2026-02-07 11:56:01] 2026-02-07 10:55:30,578 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 11:56:01] 2026-02-07 10:55:30,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 11:56:01] 2026-02-07 10:55:30,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 11:56:01] 2026-02-07 10:55:49,139 | INFO     | [monitor] cgroup control has ended
[2026-02-07 11:56:01] 2026-02-07 10:55:50,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033215129408)>', '<ExcThread(monitor, started 140032988411648)>']
[2026-02-07 11:56:01] 2026-02-07 10:55:51,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 11:56:01] 2026-02-07 10:55:51,704 | INFO     | [monitor] control thread has ended
[2026-02-07 11:56:01] 2026-02-07 10:55:55,978 | INFO     | all workflow threads have been joined
[2026-02-07 11:56:01] 2026-02-07 10:55:55,978 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 11:56:01] 2026-02-07 10:55:55,979 | INFO     | traces error code: 0
[2026-02-07 11:56:01] 2026-02-07 10:55:55,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 11:56:01] 2026-02-07 10:55:56,323 [wrapper] ==== pilot stdout END ====
[2026-02-07 11:56:01] 2026-02-07 10:55:56,411 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 11:56:01] 2026-02-07 10:55:56,535 [wrapper] pilotpid: 22026
[2026-02-07 11:56:01] 2026-02-07 10:55:56,647 [wrapper] Pilot exit status: 0
[2026-02-07 11:56:01] 2026-02-07 10:55:56,957 [wrapper] pandaids: 7004058172
[2026-02-07 11:56:01] 2026-02-07 10:55:57,986 [wrapper] cleanup supervisor_pilot 16017 22027
[2026-02-07 11:56:01] 2026-02-07 10:55:58,088 [wrapper] Test setup, not cleaning
[2026-02-07 11:56:01] 2026-02-07 10:55:58,168 [wrapper] apfmon messages muted
[2026-02-07 11:56:01] 2026-02-07 10:55:58,279 [wrapper] ==== wrapper stdout END ====
[2026-02-07 11:56:01] 2026-02-07 10:55:58,368 [wrapper] ==== wrapper stderr END ====
[2026-02-07 11:56:01]  *** Error codes and diagnostics ***
[2026-02-07 11:56:01]     "exeErrorCode": 0,
[2026-02-07 11:56:01]     "exeErrorDiag": "",
[2026-02-07 11:56:01]     "pilotErrorCode": 0,
[2026-02-07 11:56:01]     "pilotErrorDiag": "",
[2026-02-07 11:56:01]  *** Listing of results directory ***
[2026-02-07 11:56:01] total 682584
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc    584627 Feb  6 15:32 pilot3.tar.gz
[2026-02-07 11:56:01] -rwx------. 1 boinc boinc     36322 Feb  6 15:36 runpilot2-wrapper.sh
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc      5111 Feb  6 15:38 queuedata.json
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc       100 Feb  7 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 11:56:01] -rwxr-xr-x. 1 boinc boinc      7986 Feb  7 07:16 run_atlas
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc       105 Feb  7 07:16 job.xml
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc      6391 Feb  7 07:16 init_data.xml
[2026-02-07 11:56:01] -rw-r--r--. 2 boinc boinc 503788738 Feb  7 07:16 EVNT.48317949._000254.pool.root.1
[2026-02-07 11:56:01] -rw-r--r--. 2 boinc boinc     15845 Feb  7 07:16 start_atlas.sh
[2026-02-07 11:56:01] drwxrwx--x. 2 boinc boinc        68 Feb  7 07:16 shared
[2026-02-07 11:56:01] -rw-r--r--. 2 boinc boinc    597954 Feb  7 07:16 input.tar.gz
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc         0 Feb  7 07:16 boinc_lockfile
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc      2524 Feb  7 07:16 pandaJob.out
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc   1009512 Feb  7 07:17 agis_schedconf.cvmfs.json
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc       415 Feb  7 07:17 workernode_map.json
[2026-02-07 11:56:01] drwx------. 5 boinc boinc      4096 Feb  7 07:17 pilot3
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc 185528610 Feb  7 11:53 HITS.48317952._013584.pool.root.1
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc       531 Feb  7 11:54 boinc_task_state.xml
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc      1020 Feb  7 11:54 memory_monitor_summary.json
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc   1513088 Feb  7 11:54 agis_ddmendpoints.agis.ALL.json
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc    531374 Feb  7 11:54 log.48317952._013584.job.log.tgz.1
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc      6318 Feb  7 11:54 heartbeat.json
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc        95 Feb  7 11:55 pilot_heartbeat.json
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc      8192 Feb  7 11:55 boinc_mmap_file
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc        28 Feb  7 11:55 wrapper_checkpoint.txt
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc      5066 Feb  7 11:55 pilotlog.txt
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc   2328782 Feb  7 11:55 log.48317952._013584.job.log.1
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc       357 Feb  7 11:56 output.list
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc       620 Feb  7 11:56 runtime_log
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc   2877440 Feb  7 11:56 result.tar.gz
[2026-02-07 11:56:01] -rw-------. 1 boinc boinc       655 Feb  7 11:56 uHyNDmU7b88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm0EZKDm526wfn.diag
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc      8816 Feb  7 11:56 runtime_log.err
[2026-02-07 11:56:01] -rw-r--r--. 1 boinc boinc     20725 Feb  7 11:56 stderr.txt
[2026-02-07 11:56:01] HITS file was successfully produced:
[2026-02-07 11:56:02] -rw-------. 1 boinc boinc 185528610 Feb  7 11:53 shared/HITS.pool.root.1
[2026-02-07 11:56:02]  *** Contents of shared directory: ***
[2026-02-07 11:56:02] total 676580
[2026-02-07 11:56:02] -rw-r--r--. 2 boinc boinc 503788738 Feb  7 07:16 ATLAS.root_0
[2026-02-07 11:56:02] -rw-r--r--. 2 boinc boinc     15845 Feb  7 07:16 start_atlas.sh
[2026-02-07 11:56:02] -rw-r--r--. 2 boinc boinc    597954 Feb  7 07:16 input.tar.gz
[2026-02-07 11:56:02] -rw-------. 1 boinc boinc 185528610 Feb  7 11:53 HITS.pool.root.1
[2026-02-07 11:56:02] -rw-------. 1 boinc boinc   2877440 Feb  7 11:56 result.tar.gz
11:56:03 (18113): run_atlas exited; CPU time 63958.967059
11:56:03 (18113): called boinc_finish(0)

</stderr_txt>
]]>

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