Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:01:39 (125804): wrapper (7.7.26015): starting
06:01:39 (125804): wrapper: running run_atlas (--nthreads 2)
[2026-02-07 06:01:39] Arguments: --nthreads 2
[2026-02-07 06:01:39] Threads: 2
[2026-02-07 06:01:39] Checking for CVMFS
[2026-02-07 06:01:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 06:01:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 06:01:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 06:01:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 06:01:40] 2.9.2.0 2935 1116 57640 155971 2 50 30292372 36864001 0 130560 0 360003 99.978 44794 19324 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 06:01:40] CVMFS is ok
[2026-02-07 06:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 06:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 06:01:40] Further information can be found at the LHC@home message board.
[2026-02-07 06:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 06:01:40] Checking for apptainer binary...
[2026-02-07 06:01:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 06:01:40] Running /usr/bin/apptainer --version
[2026-02-07 06:01:40] apptainer version 1.4.1-1.1
[2026-02-07 06:01:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 06:01:40] magicA244
[2026-02-07 06:01:40] apptainer works
[2026-02-07 06:01:40] Set ATHENA_PROC_NUMBER=2
[2026-02-07 06:01:40] Set ATHENA_CORE_NUMBER=2
[2026-02-07 06:01:40] Starting ATLAS job with PandaID=7003982696
[2026-02-07 06:01:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 08:09:18]  *** The last 200 lines of the pilot log: ***
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | job 7003982696 has completed (purged errors)
[2026-02-07 08:09:18] 2026-02-07 07:08:13,819 | INFO     | overall cleanup function is called
[2026-02-07 08:09:18] 2026-02-07 07:08:14,825 | INFO     | --- collectZombieJob: --- 10, [134236]
[2026-02-07 08:09:18] 2026-02-07 07:08:14,826 | INFO     | zombie collector waiting for pid 134236
[2026-02-07 08:09:18] 2026-02-07 07:08:14,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 08:09:18] 2026-02-07 07:08:14,826 | INFO     | collected zombie processes
[2026-02-07 08:09:18] 2026-02-07 07:08:14,826 | INFO     | will attempt to kill all subprocesses of pid=134236
[2026-02-07 08:09:18] 2026-02-07 07:08:14,858 | INFO     | process IDs to be killed: [134236] (in reverse order)
[2026-02-07 08:09:18] 2026-02-07 07:08:14,877 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 08:09:18] 2026-02-07 07:08:14,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 08:09:18] 2026-02-07 07:08:14,878 | INFO     | did not find any defunct processes belonging to 134236
[2026-02-07 08:09:18] 2026-02-07 07:08:14,878 | INFO     | did not find any defunct processes belonging to 134236
[2026-02-07 08:09:18] 2026-02-07 07:08:14,878 | INFO     | ready for new job
[2026-02-07 08:09:18] 2026-02-07 07:08:14,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 08:09:18] 2026-02-07 07:08:14,879 | INFO     | **************************************
[2026-02-07 08:09:18] 2026-02-07 07:08:14,879 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 08:09:18] 2026-02-07 07:08:14,879 | INFO     | **************************************
[2026-02-07 08:09:18] 2026-02-07 07:08:14,879 | INFO     | 
[2026-02-07 08:09:18] 2026-02-07 07:08:14,879 | INFO     | architecture information:
[2026-02-07 08:09:18] 2026-02-07 07:08:14,879 | INFO     | executing command: cat /etc/os-release
[2026-02-07 08:09:18] 2026-02-07 07:08:14,887 | INFO     | cat /etc/os-release:
[2026-02-07 08:09:18] NAME="CentOS Linux"
[2026-02-07 08:09:18] VERSION="7 (Core)"
[2026-02-07 08:09:18] ID="centos"
[2026-02-07 08:09:18] ID_LIKE="rhel fedora"
[2026-02-07 08:09:18] VERSION_ID="7"
[2026-02-07 08:09:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 08:09:18] ANSI_COLOR="0;31"
[2026-02-07 08:09:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 08:09:18] HOME_URL="https://www.centos.org/"
[2026-02-07 08:09:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 08:09:18] 
[2026-02-07 08:09:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 08:09:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 08:09:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 08:09:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 08:09:18] 
[2026-02-07 08:09:18] 2026-02-07 07:08:14,887 | INFO     | **************************************
[2026-02-07 08:09:18] 2026-02-07 07:08:15,389 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 08:09:18] 2026-02-07 07:08:15,421 | INFO     | sufficient remaining disk space (491014586368 B)
[2026-02-07 08:09:18] 2026-02-07 07:08:15,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 08:09:18] 2026-02-07 07:08:15,422 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 08:09:18] 2026-02-07 07:08:15,422 | INFO     | update_server=False
[2026-02-07 08:09:18] 2026-02-07 07:08:15,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 08:09:18] 2026-02-07 07:08:15,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 08:09:18] 2026-02-07 07:08:15,838 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 08:09:18] 2026-02-07 07:08:15,838 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 08:09:18] 2026-02-07 07:08:15,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 08:09:18] 2026-02-07 07:08:15,839 | INFO     | will abort loop
[2026-02-07 08:09:18] 2026-02-07 07:08:16,282 | INFO     | all data control threads have been joined
[2026-02-07 08:09:18] 2026-02-07 07:08:16,428 | INFO     | [job] retrieve thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:16,483 | INFO     | all job control threads have been joined
[2026-02-07 08:09:18] 2026-02-07 07:08:16,488 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:16,584 | INFO     | all payload control threads have been joined
[2026-02-07 08:09:18] 2026-02-07 07:08:16,738 | INFO     | [data] copytool_in thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:16,794 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:16,845 | INFO     | [job] job monitor thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:16,927 | INFO     | [payload] validate_post thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,288 | INFO     | [data] control thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,489 | INFO     | [job] control thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,590 | INFO     | [payload] control thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,675 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,715 | INFO     | [data] copytool_out thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,748 | INFO     | [job] validate thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,757 | INFO     | [payload] failed_post thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:17,769 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:18,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 08:09:18] 2026-02-07 07:08:18,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 08:09:18] 2026-02-07 07:08:19,353 | INFO     | [job] queue monitor thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:22,376 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 08:09:18] 2026-02-07 07:08:46,491 | INFO     | PID=129826 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-07 08:09:18] 2026-02-07 07:08:46,491 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 08:09:18] 2026-02-07 07:08:46,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 08:09:18] 2026-02-07 07:08:46,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 08:09:18] 2026-02-07 07:09:11,770 | INFO     | [monitor] cgroup control has ended
[2026-02-07 08:09:18] 2026-02-07 07:09:13,185 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045287458624)>', '<ExcThread(monitor, started 140044614477568)>']
[2026-02-07 08:09:18] 2026-02-07 07:09:13,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 08:09:18] 2026-02-07 07:09:13,634 | INFO     | [monitor] control thread has ended
[2026-02-07 08:09:18] 2026-02-07 07:09:18,211 | INFO     | all workflow threads have been joined
[2026-02-07 08:09:18] 2026-02-07 07:09:18,211 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 08:09:18] 2026-02-07 07:09:18,212 | INFO     | traces error code: 0
[2026-02-07 08:09:18] 2026-02-07 07:09:18,212 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 08:09:18] 2026-02-07 07:09:18,256 [wrapper] ==== pilot stdout END ====
[2026-02-07 08:09:18] 2026-02-07 07:09:18,259 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 08:09:18] 2026-02-07 07:09:18,261 [wrapper] pilotpid: 129826
[2026-02-07 08:09:18] 2026-02-07 07:09:18,263 [wrapper] Pilot exit status: 0
[2026-02-07 08:09:18] 2026-02-07 07:09:18,269 [wrapper] pandaids: 7003982696
[2026-02-07 08:09:18] 2026-02-07 07:09:18,281 [wrapper] cleanup supervisor_pilot  139739 129827
[2026-02-07 08:09:18] 2026-02-07 07:09:18,284 [wrapper] Test setup, not cleaning
[2026-02-07 08:09:18] 2026-02-07 07:09:18,286 [wrapper] apfmon messages muted
[2026-02-07 08:09:18] 2026-02-07 07:09:18,288 [wrapper] ==== wrapper stdout END ====
[2026-02-07 08:09:18] 2026-02-07 07:09:18,289 [wrapper] ==== wrapper stderr END ====
[2026-02-07 08:09:18]  *** Error codes and diagnostics ***
[2026-02-07 08:09:18]     "exeErrorCode": 0,
[2026-02-07 08:09:18]     "exeErrorDiag": "",
[2026-02-07 08:09:18]     "pilotErrorCode": 0,
[2026-02-07 08:09:18]     "pilotErrorDiag": "",
[2026-02-07 08:09:18]  *** Listing of results directory ***
[2026-02-07 08:09:18] total 671728
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc    584627 Feb  6 15:32 pilot3.tar.gz
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc      5111 Feb  6 15:35 queuedata.json
[2026-02-07 08:09:18] -rwx------ 1 boinc boinc     36322 Feb  6 15:35 runpilot2-wrapper.sh
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc       100 Feb  7 06:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 08:09:18] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 06:01 run_atlas
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc       105 Feb  7 06:01 job.xml
[2026-02-07 08:09:18] -rw-r--r-- 2 boinc boinc 496459757 Feb  7 06:01 EVNT.48317889._000278.pool.root.1
[2026-02-07 08:09:18] -rw-r--r-- 2 boinc boinc    597949 Feb  7 06:01 input.tar.gz
[2026-02-07 08:09:18] -rw-r--r-- 2 boinc boinc     15845 Feb  7 06:01 start_atlas.sh
[2026-02-07 08:09:18] drwxrwx--x 2 boinc boinc      4096 Feb  7 06:01 shared
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc         0 Feb  7 06:01 boinc_setup_complete
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc      6208 Feb  7 06:01 init_data.xml
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc         0 Feb  7 06:01 boinc_lockfile
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc      2522 Feb  7 06:01 pandaJob.out
[2026-02-07 08:09:18] -rw------- 1 boinc boinc   1009504 Feb  7 06:01 agis_schedconf.cvmfs.json
[2026-02-07 08:09:18] -rw------- 1 boinc boinc   1513088 Feb  7 06:01 agis_ddmendpoints.agis.ALL.json
[2026-02-07 08:09:18] -rw------- 1 boinc boinc       428 Feb  7 06:02 workernode_map.json
[2026-02-07 08:09:18] drwx------ 5 boinc boinc      4096 Feb  7 06:02 pilot3
[2026-02-07 08:09:18] -rw------- 1 boinc boinc 184713464 Feb  7 08:07 HITS.48317892._014743.pool.root.1
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc       531 Feb  7 08:07 boinc_task_state.xml
[2026-02-07 08:09:18] -rw------- 1 boinc boinc      1013 Feb  7 08:08 memory_monitor_summary.json
[2026-02-07 08:09:18] -rw------- 1 boinc boinc    283771 Feb  7 08:08 log.48317892._014743.job.log.tgz.1
[2026-02-07 08:09:18] -rw------- 1 boinc boinc      6304 Feb  7 08:08 heartbeat.json
[2026-02-07 08:09:18] -rw------- 1 boinc boinc        95 Feb  7 08:08 pilot_heartbeat.json
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc      8192 Feb  7 08:08 boinc_mmap_file
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc        27 Feb  7 08:08 wrapper_checkpoint.txt
[2026-02-07 08:09:18] -rw------- 1 boinc boinc      4933 Feb  7 08:09 pilotlog.txt
[2026-02-07 08:09:18] -rw------- 1 boinc boinc   1088488 Feb  7 08:09 log.48317892._014743.job.log.1
[2026-02-07 08:09:18] -rw------- 1 boinc boinc       357 Feb  7 08:09 output.list
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc       620 Feb  7 08:09 runtime_log
[2026-02-07 08:09:18] -rw------- 1 boinc boinc   1392640 Feb  7 08:09 result.tar.gz
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc      8911 Feb  7 08:09 runtime_log.err
[2026-02-07 08:09:18] -rw------- 1 boinc boinc       660 Feb  7 08:09 rZoNDmI7b88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIEZKDmf3bMXo.diag
[2026-02-07 08:09:18] -rw-r--r-- 1 boinc boinc     12044 Feb  7 08:09 stderr.txt
[2026-02-07 08:09:18] HITS file was successfully produced:
[2026-02-07 08:09:18] -rw------- 1 boinc boinc 184713464 Feb  7 08:07 shared/HITS.pool.root.1
[2026-02-07 08:09:18]  *** Contents of shared directory: ***
[2026-02-07 08:09:18] total 667180
[2026-02-07 08:09:18] -rw-r--r-- 2 boinc boinc 496459757 Feb  7 06:01 ATLAS.root_0
[2026-02-07 08:09:18] -rw-r--r-- 2 boinc boinc    597949 Feb  7 06:01 input.tar.gz
[2026-02-07 08:09:18] -rw-r--r-- 2 boinc boinc     15845 Feb  7 06:01 start_atlas.sh
[2026-02-07 08:09:18] -rw------- 1 boinc boinc 184713464 Feb  7 08:07 HITS.pool.root.1
[2026-02-07 08:09:18] -rw------- 1 boinc boinc   1392640 Feb  7 08:09 result.tar.gz
08:09:19 (125804): run_atlas exited; CPU time 14730.633084
08:09:19 (125804): called boinc_finish(0)

</stderr_txt>
]]>

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