Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:01:26 (3137392): wrapper (7.7.26015): starting
07:01:26 (3137392): wrapper: running run_atlas (--nthreads 3)
[2026-02-07 07:01:26] Arguments: --nthreads 3
[2026-02-07 07:01:26] Threads: 3
[2026-02-07 07:01:26] Checking for CVMFS
[2026-02-07 07:01:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 07:01:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 07:01:27] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 07:01:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 07:01:27] 2.9.2.0 2953292 1347 62328 155973 3 50 25034460 36864001 0 130560 0 523348 99.979 56184 24717 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 07:01:27] CVMFS is ok
[2026-02-07 07:01:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 07:01:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 07:01:27] Further information can be found at the LHC@home message board.
[2026-02-07 07:01:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 07:01:27] Checking for apptainer binary...
[2026-02-07 07:01:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 07:01:27] Running /usr/bin/apptainer --version
[2026-02-07 07:01:27] apptainer version 1.4.1-1.1
[2026-02-07 07:01:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 07:01:27] thA333
[2026-02-07 07:01:27] apptainer works
[2026-02-07 07:01:27] Set ATHENA_PROC_NUMBER=3
[2026-02-07 07:01:27] Set ATHENA_CORE_NUMBER=3
[2026-02-07 07:01:27] Starting ATLAS job with PandaID=7004057960
[2026-02-07 07:01:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 08:38:56]  *** The last 200 lines of the pilot log: ***
[2026-02-07 08:38:56] 2026-02-07 07:37:53,896 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 08:38:56] 2026-02-07 07:37:53,896 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 08:38:56] 2026-02-07 07:37:53,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 08:38:56] 2026-02-07 07:37:53,897 | INFO     | will abort loop
[2026-02-07 08:38:56] 2026-02-07 07:37:53,900 | INFO     | all job control threads have been joined
[2026-02-07 08:38:56] 2026-02-07 07:37:53,903 | INFO     | all data control threads have been joined
[2026-02-07 08:38:56] 2026-02-07 07:37:54,057 | INFO     | all payload control threads have been joined
[2026-02-07 08:38:56] 2026-02-07 07:37:54,725 | INFO     | [job] queue monitor thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:54,726 | INFO     | [job] retrieve thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:54,843 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:54,903 | INFO     | [job] job monitor thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:54,906 | INFO     | [job] control thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:54,909 | INFO     | [data] control thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,063 | INFO     | [payload] control thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,176 | INFO     | [payload] validate_post thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,185 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 08:38:56] 2026-02-07 07:37:55,332 | INFO     | [payload] failed_post thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,629 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,675 | INFO     | [job] validate thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,876 | INFO     | [data] copytool_in thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:55,952 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:56,029 | INFO     | job.realtimelogging is not enabled
[2026-02-07 08:38:56] 2026-02-07 07:37:57,035 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:57,192 | INFO     | [data] copytool_out thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:37:57,727 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 08:38:56] 2026-02-07 07:38:23,824 | INFO     | PID=3141448 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 08:38:56] 2026-02-07 07:38:23,824 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 08:38:56] 2026-02-07 07:38:23,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 08:38:56] 2026-02-07 07:38:23,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 08:38:56] 2026-02-07 07:38:49,766 | INFO     | [monitor] cgroup control has ended
[2026-02-07 08:38:56] 2026-02-07 07:38:51,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139728288253760)>', '<ExcThread(monitor, started 139727936141056)>']
[2026-02-07 08:38:56] 2026-02-07 07:38:51,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 08:38:56] 2026-02-07 07:38:51,963 | INFO     | [monitor] control thread has ended
[2026-02-07 08:38:56] 2026-02-07 07:38:56,801 | INFO     | all workflow threads have been joined
[2026-02-07 08:38:56] 2026-02-07 07:38:56,802 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 08:38:56] 2026-02-07 07:38:56,802 | INFO     | traces error code: 0
[2026-02-07 08:38:56] 2026-02-07 07:38:56,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 08:38:56] 2026-02-07 07:38:56,850 [wrapper] ==== pilot stdout END ====
[2026-02-07 08:38:56] 2026-02-07 07:38:56,853 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 08:38:56] 2026-02-07 07:38:56,855 [wrapper] pilotpid: 3141448
[2026-02-07 08:38:56] 2026-02-07 07:38:56,857 [wrapper] Pilot exit status: 0
[2026-02-07 08:38:56] 2026-02-07 07:38:56,864 [wrapper] pandaids: 7004057960
[2026-02-07 08:38:56] 2026-02-07 07:38:56,881 [wrapper] cleanup supervisor_pilot 3151139 3141449
[2026-02-07 08:38:56] 2026-02-07 07:38:56,884 [wrapper] Test setup, not cleaning
[2026-02-07 08:38:56] 2026-02-07 07:38:56,886 [wrapper] apfmon messages muted
[2026-02-07 08:38:56] 2026-02-07 07:38:56,889 [wrapper] ==== wrapper stdout END ====
[2026-02-07 08:38:56] 2026-02-07 07:38:56,891 [wrapper] ==== wrapper stderr END ====
[2026-02-07 08:38:56]  *** Error codes and diagnostics ***
[2026-02-07 08:38:56]     "exeErrorCode": 0,
[2026-02-07 08:38:56]     "exeErrorDiag": "",
[2026-02-07 08:38:56]     "pilotErrorCode": 0,
[2026-02-07 08:38:56]     "pilotErrorDiag": "",
[2026-02-07 08:38:56]  *** Listing of results directory ***
[2026-02-07 08:38:56] total 678760
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc    584627 Feb  6 15:32 pilot3.tar.gz
[2026-02-07 08:38:56] -rwx------ 1 boinc boinc     36322 Feb  6 15:34 runpilot2-wrapper.sh
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc      5111 Feb  6 15:35 queuedata.json
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc       100 Feb  7 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 08:38:56] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 07:01 run_atlas
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc       105 Feb  7 07:01 job.xml
[2026-02-07 08:38:56] -rw-r--r-- 2 boinc boinc 503788738 Feb  7 07:01 EVNT.48317949._000254.pool.root.1
[2026-02-07 08:38:56] -rw-r--r-- 2 boinc boinc    597948 Feb  7 07:01 input.tar.gz
[2026-02-07 08:38:56] -rw-r--r-- 2 boinc boinc     15845 Feb  7 07:01 start_atlas.sh
[2026-02-07 08:38:56] drwxrwx--x 2 boinc boinc      4096 Feb  7 07:01 shared
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc         0 Feb  7 07:01 boinc_setup_complete
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc      6197 Feb  7 07:01 init_data.xml
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc         0 Feb  7 07:01 boinc_lockfile
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc      2523 Feb  7 07:01 pandaJob.out
[2026-02-07 08:38:56] -rw------- 1 boinc boinc   1009512 Feb  7 07:01 agis_schedconf.cvmfs.json
[2026-02-07 08:38:56] -rw------- 1 boinc boinc   1513088 Feb  7 07:01 agis_ddmendpoints.agis.ALL.json
[2026-02-07 08:38:56] -rw------- 1 boinc boinc       418 Feb  7 07:01 workernode_map.json
[2026-02-07 08:38:56] drwx------ 5 boinc boinc      4096 Feb  7 07:01 pilot3
[2026-02-07 08:38:56] -rw------- 1 boinc boinc 185137755 Feb  7 08:37 HITS.48317952._013546.pool.root.1
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc       530 Feb  7 08:37 boinc_task_state.xml
[2026-02-07 08:38:56] -rw------- 1 boinc boinc      1016 Feb  7 08:37 memory_monitor_summary.json
[2026-02-07 08:38:56] -rw------- 1 boinc boinc    259449 Feb  7 08:37 log.48317952._013546.job.log.tgz.1
[2026-02-07 08:38:56] -rw------- 1 boinc boinc      6293 Feb  7 08:37 heartbeat.json
[2026-02-07 08:38:56] -rw------- 1 boinc boinc        95 Feb  7 08:38 pilot_heartbeat.json
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc      8192 Feb  7 08:38 boinc_mmap_file
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc        27 Feb  7 08:38 wrapper_checkpoint.txt
[2026-02-07 08:38:56] -rw------- 1 boinc boinc      5006 Feb  7 08:38 pilotlog.txt
[2026-02-07 08:38:56] -rw------- 1 boinc boinc    839077 Feb  7 08:38 log.48317952._013546.job.log.1
[2026-02-07 08:38:56] -rw------- 1 boinc boinc       357 Feb  7 08:38 output.list
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc       620 Feb  7 08:38 runtime_log
[2026-02-07 08:38:56] -rw------- 1 boinc boinc   1116160 Feb  7 08:38 result.tar.gz
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc      8896 Feb  7 08:38 runtime_log.err
[2026-02-07 08:38:56] -rw------- 1 boinc boinc       657 Feb  7 08:38 GIxKDmX5b88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIBZKDmHGbAan.diag
[2026-02-07 08:38:56] -rw-r--r-- 1 boinc boinc      7256 Feb  7 08:38 stderr.txt
[2026-02-07 08:38:56] HITS file was successfully produced:
[2026-02-07 08:38:56] -rw------- 1 boinc boinc 185137755 Feb  7 08:37 shared/HITS.pool.root.1
[2026-02-07 08:38:56]  *** Contents of shared directory: ***
[2026-02-07 08:38:56] total 674484
[2026-02-07 08:38:56] -rw-r--r-- 2 boinc boinc 503788738 Feb  7 07:01 ATLAS.root_0
[2026-02-07 08:38:56] -rw-r--r-- 2 boinc boinc    597948 Feb  7 07:01 input.tar.gz
[2026-02-07 08:38:56] -rw-r--r-- 2 boinc boinc     15845 Feb  7 07:01 start_atlas.sh
[2026-02-07 08:38:56] -rw------- 1 boinc boinc 185137755 Feb  7 08:37 HITS.pool.root.1
[2026-02-07 08:38:56] -rw------- 1 boinc boinc   1116160 Feb  7 08:38 result.tar.gz
08:38:58 (3137392): run_atlas exited; CPU time 16582.423347
08:38:58 (3137392): called boinc_finish(0)

</stderr_txt>
]]>

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