Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:46 (2186260): wrapper (7.7.26015): starting
04:51:46 (2186260): wrapper: running run_atlas (--nthreads 2)
[2026-02-07 04:51:46] Arguments: --nthreads 2
[2026-02-07 04:51:46] Threads: 2
[2026-02-07 04:51:46] Checking for CVMFS
[2026-02-07 04:51:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 04:51:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 04:51:47] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 04:51:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 04:51:47] 2.9.2.0 2050517 1368 55780 155969 2 50 33315317 36864001 0 130560 0 407900 99.977 54672 20915 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 04:51:47] CVMFS is ok
[2026-02-07 04:51:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 04:51:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 04:51:47] Further information can be found at the LHC@home message board.
[2026-02-07 04:51:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 04:51:47] Checking for apptainer binary...
[2026-02-07 04:51:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 04:51:47] Running /usr/bin/apptainer --version
[2026-02-07 04:51:47] apptainer version 1.4.1-1.1
[2026-02-07 04:51:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 04:51:47] atlasA229
[2026-02-07 04:51:47] apptainer works
[2026-02-07 04:51:47] Set ATHENA_PROC_NUMBER=2
[2026-02-07 04:51:47] Set ATHENA_CORE_NUMBER=2
[2026-02-07 04:51:48] Starting ATLAS job with PandaID=6997424888
[2026-02-07 04:51:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 07:05:34]  *** The last 200 lines of the pilot log: ***
[2026-02-07 07:05:34] 2026-02-07 06:05:03,259 | INFO     | job 6997424888 has completed (purged errors)
[2026-02-07 07:05:34] 2026-02-07 06:05:03,259 | INFO     | overall cleanup function is called
[2026-02-07 07:05:34] 2026-02-07 06:05:04,266 | INFO     | --- collectZombieJob: --- 10, [2194689]
[2026-02-07 07:05:34] 2026-02-07 06:05:04,266 | INFO     | zombie collector waiting for pid 2194689
[2026-02-07 07:05:34] 2026-02-07 06:05:04,266 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 07:05:34] 2026-02-07 06:05:04,266 | INFO     | collected zombie processes
[2026-02-07 07:05:34] 2026-02-07 06:05:04,267 | INFO     | will attempt to kill all subprocesses of pid=2194689
[2026-02-07 07:05:34] 2026-02-07 06:05:04,298 | INFO     | process IDs to be killed: [2194689] (in reverse order)
[2026-02-07 07:05:34] 2026-02-07 06:05:04,320 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 07:05:34] 2026-02-07 06:05:04,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 07:05:34] 2026-02-07 06:05:04,321 | INFO     | did not find any defunct processes belonging to 2194689
[2026-02-07 07:05:34] 2026-02-07 06:05:04,322 | INFO     | did not find any defunct processes belonging to 2194689
[2026-02-07 07:05:34] 2026-02-07 06:05:04,322 | INFO     | ready for new job
[2026-02-07 07:05:34] 2026-02-07 06:05:04,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 07:05:34] 2026-02-07 06:05:04,322 | INFO     | **************************************
[2026-02-07 07:05:34] 2026-02-07 06:05:04,323 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 07:05:34] 2026-02-07 06:05:04,323 | INFO     | **************************************
[2026-02-07 07:05:34] 2026-02-07 06:05:04,323 | INFO     | 
[2026-02-07 07:05:34] 2026-02-07 06:05:04,323 | INFO     | architecture information:
[2026-02-07 07:05:34] 2026-02-07 06:05:04,323 | INFO     | executing command: cat /etc/os-release
[2026-02-07 07:05:34] 2026-02-07 06:05:04,331 | INFO     | cat /etc/os-release:
[2026-02-07 07:05:34] NAME="CentOS Linux"
[2026-02-07 07:05:34] VERSION="7 (Core)"
[2026-02-07 07:05:34] ID="centos"
[2026-02-07 07:05:34] ID_LIKE="rhel fedora"
[2026-02-07 07:05:34] VERSION_ID="7"
[2026-02-07 07:05:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 07:05:34] ANSI_COLOR="0;31"
[2026-02-07 07:05:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 07:05:34] HOME_URL="https://www.centos.org/"
[2026-02-07 07:05:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 07:05:34] 
[2026-02-07 07:05:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 07:05:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 07:05:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 07:05:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 07:05:34] 
[2026-02-07 07:05:34] 2026-02-07 06:05:04,331 | INFO     | **************************************
[2026-02-07 07:05:34] 2026-02-07 06:05:04,835 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | INFO     | sufficient remaining disk space (324929585152 B)
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | INFO     | update_server=False
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 07:05:34] 2026-02-07 06:05:04,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 07:05:34] 2026-02-07 06:05:05,010 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-07 07:05:34] 2026-02-07 06:05:05,011 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-07 07:05:34] 2026-02-07 06:05:05,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 07:05:34] 2026-02-07 06:05:05,011 | INFO     | will abort loop
[2026-02-07 07:05:34] 2026-02-07 06:05:05,052 | INFO     | all payload control threads have been joined
[2026-02-07 07:05:34] 2026-02-07 06:05:05,384 | INFO     | all job control threads have been joined
[2026-02-07 07:05:34] 2026-02-07 06:05:05,445 | INFO     | all data control threads have been joined
[2026-02-07 07:05:34] 2026-02-07 06:05:05,851 | INFO     | [job] queue monitor thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:05,852 | INFO     | [job] retrieve thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,017 | INFO     | [job] job monitor thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 07:05:34] 2026-02-07 06:05:06,058 | INFO     | [payload] control thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,216 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,390 | INFO     | [job] control thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,449 | INFO     | [payload] failed_post thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,450 | INFO     | [data] control thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,827 | INFO     | [job] validate thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,903 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,943 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:06,956 | INFO     | [payload] validate_post thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:07,127 | INFO     | [data] copytool_in thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:08,058 | INFO     | [data] copytool_out thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:08,854 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:15,690 | INFO     | job.realtimelogging is not enabled
[2026-02-07 07:05:34] 2026-02-07 06:05:16,696 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 07:05:34] 2026-02-07 06:05:20,709 | INFO     | [monitor] cgroup control has ended
[2026-02-07 07:05:34] 2026-02-07 06:05:21,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140054902937408)>', '<ExcThread(monitor, started 140054538196736)>']
[2026-02-07 07:05:34] 2026-02-07 06:05:26,824 | INFO     | all workflow threads have been joined
[2026-02-07 07:05:34] 2026-02-07 06:05:26,825 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 07:05:34] 2026-02-07 06:05:26,825 | INFO     | traces error code: 0
[2026-02-07 07:05:34] 2026-02-07 06:05:26,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 07:05:34] 2026-02-07 06:05:34,494 | INFO     | PID=2190282 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 07:05:34] 2026-02-07 06:05:34,494 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 07:05:34] 2026-02-07 06:05:34,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 07:05:34] 2026-02-07 06:05:34,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 07:05:34] 2026-02-07 06:05:34,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 07:05:34] 2026-02-07 06:05:34,494 | INFO     | [monitor] control thread has ended
[2026-02-07 07:05:34] 2026-02-07 06:05:34,535 [wrapper] ==== pilot stdout END ====
[2026-02-07 07:05:34] 2026-02-07 06:05:34,538 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 07:05:34] 2026-02-07 06:05:34,540 [wrapper] pilotpid: 2190282
[2026-02-07 07:05:34] 2026-02-07 06:05:34,542 [wrapper] Pilot exit status: 0
[2026-02-07 07:05:34] 2026-02-07 06:05:34,549 [wrapper] pandaids: 6997424888
[2026-02-07 07:05:34] 2026-02-07 06:05:34,562 [wrapper] cleanup supervisor_pilot 2199564 2190283
[2026-02-07 07:05:34] 2026-02-07 06:05:34,564 [wrapper] Test setup, not cleaning
[2026-02-07 07:05:34] 2026-02-07 06:05:34,566 [wrapper] apfmon messages muted
[2026-02-07 07:05:34] 2026-02-07 06:05:34,568 [wrapper] ==== wrapper stdout END ====
[2026-02-07 07:05:34] 2026-02-07 06:05:34,570 [wrapper] ==== wrapper stderr END ====
[2026-02-07 07:05:34]  *** Error codes and diagnostics ***
[2026-02-07 07:05:34]     "exeErrorCode": 0,
[2026-02-07 07:05:34]     "exeErrorDiag": "",
[2026-02-07 07:05:34]     "pilotErrorCode": 0,
[2026-02-07 07:05:34]     "pilotErrorDiag": "",
[2026-02-07 07:05:34]  *** Listing of results directory ***
[2026-02-07 07:05:34] total 668684
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc    584627 Feb  6 13:12 pilot3.tar.gz
[2026-02-07 07:05:34] -rwx------ 1 boinc boinc     36322 Feb  6 13:15 runpilot2-wrapper.sh
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc      5111 Feb  6 13:18 queuedata.json
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc       100 Feb  7 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 07:05:34] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 04:51 run_atlas
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc       105 Feb  7 04:51 job.xml
[2026-02-07 07:05:34] -rw-r--r-- 2 boinc boinc 492481130 Feb  7 04:51 EVNT.48318016._000037.pool.root.1
[2026-02-07 07:05:34] -rw-r--r-- 2 boinc boinc    597952 Feb  7 04:51 input.tar.gz
[2026-02-07 07:05:34] -rw-r--r-- 2 boinc boinc     15845 Feb  7 04:51 start_atlas.sh
[2026-02-07 07:05:34] drwxrwx--x 2 boinc boinc      4096 Feb  7 04:51 shared
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc         0 Feb  7 04:51 boinc_setup_complete
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc      6206 Feb  7 04:51 init_data.xml
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc         0 Feb  7 04:51 boinc_lockfile
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc      2520 Feb  7 04:51 pandaJob.out
[2026-02-07 07:05:34] -rw------- 1 boinc boinc   1009520 Feb  7 04:52 agis_schedconf.cvmfs.json
[2026-02-07 07:05:34] -rw------- 1 boinc boinc   1513088 Feb  7 04:52 agis_ddmendpoints.agis.ALL.json
[2026-02-07 07:05:34] -rw------- 1 boinc boinc       429 Feb  7 04:52 workernode_map.json
[2026-02-07 07:05:34] drwx------ 5 boinc boinc      4096 Feb  7 04:52 pilot3
[2026-02-07 07:05:34] -rw------- 1 boinc boinc        95 Feb  7 07:04 pilot_heartbeat.json
[2026-02-07 07:05:34] -rw------- 1 boinc boinc 185460914 Feb  7 07:04 HITS.48318018._001854.pool.root.1
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc       530 Feb  7 07:04 boinc_task_state.xml
[2026-02-07 07:05:34] -rw------- 1 boinc boinc      1012 Feb  7 07:04 memory_monitor_summary.json
[2026-02-07 07:05:34] -rw------- 1 boinc boinc    286128 Feb  7 07:05 log.48318018._001854.job.log.tgz.1
[2026-02-07 07:05:34] -rw------- 1 boinc boinc      6301 Feb  7 07:05 heartbeat.json
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc      8192 Feb  7 07:05 boinc_mmap_file
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc        27 Feb  7 07:05 wrapper_checkpoint.txt
[2026-02-07 07:05:34] -rw------- 1 boinc boinc       747 Feb  7 07:05 pilotlog.txt
[2026-02-07 07:05:34] -rw------- 1 boinc boinc   1146578 Feb  7 07:05 log.48318018._001854.job.log.1
[2026-02-07 07:05:34] -rw------- 1 boinc boinc       357 Feb  7 07:05 output.list
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc       620 Feb  7 07:05 runtime_log
[2026-02-07 07:05:34] -rw------- 1 boinc boinc   1454080 Feb  7 07:05 result.tar.gz
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc      8911 Feb  7 07:05 runtime_log.err
[2026-02-07 07:05:34] -rw------- 1 boinc boinc       660 Feb  7 07:05 LJFMDmlvZ88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9zYKDmKEfYKn.diag
[2026-02-07 07:05:34] -rw-r--r-- 1 boinc boinc     11134 Feb  7 07:05 stderr.txt
[2026-02-07 07:05:34] HITS file was successfully produced:
[2026-02-07 07:05:34] -rw------- 1 boinc boinc 185460914 Feb  7 07:04 shared/HITS.pool.root.1
[2026-02-07 07:05:34]  *** Contents of shared directory: ***
[2026-02-07 07:05:34] total 664084
[2026-02-07 07:05:34] -rw-r--r-- 2 boinc boinc 492481130 Feb  7 04:51 ATLAS.root_0
[2026-02-07 07:05:34] -rw-r--r-- 2 boinc boinc    597952 Feb  7 04:51 input.tar.gz
[2026-02-07 07:05:34] -rw-r--r-- 2 boinc boinc     15845 Feb  7 04:51 start_atlas.sh
[2026-02-07 07:05:34] -rw------- 1 boinc boinc 185460914 Feb  7 07:04 HITS.pool.root.1
[2026-02-07 07:05:34] -rw------- 1 boinc boinc   1454080 Feb  7 07:05 result.tar.gz
07:05:35 (2186260): run_atlas exited; CPU time 15591.476395
07:05:35 (2186260): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN