Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:39:50 (2855414): wrapper (7.7.26015): starting
10:39:50 (2855414): wrapper: running run_atlas (--nthreads 4)
[2026-02-07 10:39:50] Arguments: --nthreads 4
[2026-02-07 10:39:50] Threads: 4
[2026-02-07 10:39:50] Checking for CVMFS
[2026-02-07 10:39:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-07 10:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-07 10:39:51] Running cvmfs_config stat atlas.cern.ch
[2026-02-07 10:39:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-07 10:39:51] 2.9.2.0 2540927 1656 87660 155978 3 49 36270530 36864000 0 130560 0 837155 99.986 65730 15353 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-07 10:39:51] CVMFS is ok
[2026-02-07 10:39:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-07 10:39:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-07 10:39:51] Further information can be found at the LHC@home message board.
[2026-02-07 10:39:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-07 10:39:51] Checking for apptainer binary...
[2026-02-07 10:39:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-07 10:39:51] Running /usr/bin/apptainer --version
[2026-02-07 10:39:51] apptainer version 1.4.1-1.1
[2026-02-07 10:39:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-07 10:39:51] thA319
[2026-02-07 10:39:51] apptainer works
[2026-02-07 10:39:51] Set ATHENA_PROC_NUMBER=4
[2026-02-07 10:39:51] Set ATHENA_CORE_NUMBER=4
[2026-02-07 10:39:51] Starting ATLAS job with PandaID=6997904151
[2026-02-07 10:39:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-07 11:51:30]  *** The last 200 lines of the pilot log: ***
[2026-02-07 11:51:30] 2026-02-07 10:50:59,233 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-07 11:51:30] 2026-02-07 10:50:59,233 | INFO     | job 6997904151 has completed (purged errors)
[2026-02-07 11:51:30] 2026-02-07 10:50:59,233 | INFO     | overall cleanup function is called
[2026-02-07 11:51:30] 2026-02-07 10:51:00,240 | INFO     | --- collectZombieJob: --- 10, [2864042]
[2026-02-07 11:51:30] 2026-02-07 10:51:00,240 | INFO     | zombie collector waiting for pid 2864042
[2026-02-07 11:51:30] 2026-02-07 10:51:00,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-07 11:51:30] 2026-02-07 10:51:00,240 | INFO     | collected zombie processes
[2026-02-07 11:51:30] 2026-02-07 10:51:00,241 | INFO     | will attempt to kill all subprocesses of pid=2864042
[2026-02-07 11:51:30] 2026-02-07 10:51:00,291 | INFO     | process IDs to be killed: [2864042] (in reverse order)
[2026-02-07 11:51:30] 2026-02-07 10:51:00,325 | WARNING  | found no corresponding commands to process id(s)
[2026-02-07 11:51:30] 2026-02-07 10:51:00,325 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-07 11:51:30] 2026-02-07 10:51:00,327 | INFO     | did not find any defunct processes belonging to 2864042
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | did not find any defunct processes belonging to 2864042
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | ready for new job
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | **************************************
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | **************************************
[2026-02-07 11:51:30] 2026-02-07 10:51:00,329 | INFO     | 
[2026-02-07 11:51:30] 2026-02-07 10:51:00,330 | INFO     | architecture information:
[2026-02-07 11:51:30] 2026-02-07 10:51:00,330 | INFO     | executing command: cat /etc/os-release
[2026-02-07 11:51:30] 2026-02-07 10:51:00,343 | INFO     | cat /etc/os-release:
[2026-02-07 11:51:30] NAME="CentOS Linux"
[2026-02-07 11:51:30] VERSION="7 (Core)"
[2026-02-07 11:51:30] ID="centos"
[2026-02-07 11:51:30] ID_LIKE="rhel fedora"
[2026-02-07 11:51:30] VERSION_ID="7"
[2026-02-07 11:51:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-07 11:51:30] ANSI_COLOR="0;31"
[2026-02-07 11:51:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-07 11:51:30] HOME_URL="https://www.centos.org/"
[2026-02-07 11:51:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-07 11:51:30] 
[2026-02-07 11:51:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-07 11:51:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-07 11:51:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-07 11:51:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-07 11:51:30] 
[2026-02-07 11:51:30] 2026-02-07 10:51:00,343 | INFO     | **************************************
[2026-02-07 11:51:30] 2026-02-07 10:51:00,846 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | INFO     | sufficient remaining disk space (315131691008 B)
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | INFO     | current server update state: UPDATING_FINAL
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | INFO     | update_server=False
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | INFO     | aborting loop
[2026-02-07 11:51:30] 2026-02-07 10:51:00,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-07 11:51:30] 2026-02-07 10:51:00,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-07 11:51:30] 2026-02-07 10:51:01,146 | INFO     | all data control threads have been joined
[2026-02-07 11:51:30] 2026-02-07 10:51:01,870 | INFO     | [job] retrieve thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:01,870 | INFO     | [job] job monitor thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:01,870 | INFO     | [job] queue monitor thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:01,926 | INFO     | [payload] failed_post thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:01,999 | INFO     | all payload control threads have been joined
[2026-02-07 11:51:30] 2026-02-07 10:51:02,017 | INFO     | [payload] execute_payloads thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:02,152 | INFO     | [data] control thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:02,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-07 11:51:30] 2026-02-07 10:51:02,557 | INFO     | [payload] validate_post thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:02,557 | INFO     | all job control threads have been joined
[2026-02-07 11:51:30] 2026-02-07 10:51:02,871 | INFO     | [data] copytool_out thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:02,933 | INFO     | [job] validate thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:03,005 | INFO     | [payload] control thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:03,023 | INFO     | [job] create_data_payload thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:03,160 | INFO     | [payload] validate_pre thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:03,323 | INFO     | [data] copytool_in thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:03,563 | INFO     | [job] control thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:06,217 | INFO     | [data] queue_monitor thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:07,942 | INFO     | [monitor] cgroup control has ended
[2026-02-07 11:51:30] 2026-02-07 10:51:11,027 | INFO     | job.realtimelogging is not enabled
[2026-02-07 11:51:30] 2026-02-07 10:51:12,033 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-07 11:51:30] 2026-02-07 10:51:13,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245872404288)>', '<ExcThread(monitor, started 140244498245376)>']
[2026-02-07 11:51:30] 2026-02-07 10:51:18,184 | INFO     | all workflow threads have been joined
[2026-02-07 11:51:30] 2026-02-07 10:51:18,185 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-07 11:51:30] 2026-02-07 10:51:18,185 | INFO     | traces error code: 0
[2026-02-07 11:51:30] 2026-02-07 10:51:18,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-07 11:51:30] 2026-02-07 10:51:30,396 | INFO     | PID=2859520 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-07 11:51:30] 2026-02-07 10:51:30,396 | INFO     | found 0 job(s) in 20 queues
[2026-02-07 11:51:30] 2026-02-07 10:51:30,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-07 11:51:30] 2026-02-07 10:51:30,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-07 11:51:30] 2026-02-07 10:51:30,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-07 11:51:30] 2026-02-07 10:51:30,396 | INFO     | [monitor] control thread has ended
[2026-02-07 11:51:30] 2026-02-07 10:51:30,460 [wrapper] ==== pilot stdout END ====
[2026-02-07 11:51:30] 2026-02-07 10:51:30,464 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-07 11:51:30] 2026-02-07 10:51:30,468 [wrapper] pilotpid: 2859520
[2026-02-07 11:51:30] 2026-02-07 10:51:30,472 [wrapper] Pilot exit status: 0
[2026-02-07 11:51:30] 2026-02-07 10:51:30,483 [wrapper] pandaids: 6997904151
[2026-02-07 11:51:30] 2026-02-07 10:51:30,505 [wrapper] cleanup supervisor_pilot 2869701 2859521
[2026-02-07 11:51:30] 2026-02-07 10:51:30,508 [wrapper] Test setup, not cleaning
[2026-02-07 11:51:30] 2026-02-07 10:51:30,512 [wrapper] apfmon messages muted
[2026-02-07 11:51:30] 2026-02-07 10:51:30,515 [wrapper] ==== wrapper stdout END ====
[2026-02-07 11:51:30] 2026-02-07 10:51:30,519 [wrapper] ==== wrapper stderr END ====
[2026-02-07 11:51:30]  *** Error codes and diagnostics ***
[2026-02-07 11:51:30]     "exeErrorCode": 0,
[2026-02-07 11:51:30]     "exeErrorDiag": "",
[2026-02-07 11:51:30]     "pilotErrorCode": 0,
[2026-02-07 11:51:30]     "pilotErrorDiag": "",
[2026-02-07 11:51:30]  *** Listing of results directory ***
[2026-02-07 11:51:30] total 665488
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc    584627 Feb  6 17:59 pilot3.tar.gz
[2026-02-07 11:51:30] -rwx------ 1 boinc boinc     36322 Feb  6 18:01 runpilot2-wrapper.sh
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc      5111 Feb  6 18:06 queuedata.json
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc       100 Feb  7 10:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-07 11:51:30] -rwxr-xr-x 1 boinc boinc      7986 Feb  7 10:39 run_atlas
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc       105 Feb  7 10:39 job.xml
[2026-02-07 11:51:30] -rw-r--r-- 2 boinc boinc 492895540 Feb  7 10:39 EVNT.48442096._000083.pool.root.1
[2026-02-07 11:51:30] -rw-r--r-- 2 boinc boinc    597949 Feb  7 10:39 input.tar.gz
[2026-02-07 11:51:30] -rw-r--r-- 2 boinc boinc     15845 Feb  7 10:39 start_atlas.sh
[2026-02-07 11:51:30] drwxrwx--x 2 boinc boinc      4096 Feb  7 10:39 shared
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc         0 Feb  7 10:39 boinc_setup_complete
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc      6369 Feb  7 10:39 init_data.xml
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc         0 Feb  7 10:39 boinc_lockfile
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc      2528 Feb  7 10:39 pandaJob.out
[2026-02-07 11:51:30] -rw------- 1 boinc boinc   1009504 Feb  7 10:39 agis_schedconf.cvmfs.json
[2026-02-07 11:51:30] -rw------- 1 boinc boinc   1513088 Feb  7 10:39 agis_ddmendpoints.agis.ALL.json
[2026-02-07 11:51:30] -rw------- 1 boinc boinc       427 Feb  7 10:40 workernode_map.json
[2026-02-07 11:51:30] drwx------ 5 boinc boinc      4096 Feb  7 10:40 pilot3
[2026-02-07 11:51:30] -rw------- 1 boinc boinc 182852120 Feb  7 11:50 HITS.48442098._004115.pool.root.1
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc       530 Feb  7 11:50 boinc_task_state.xml
[2026-02-07 11:51:30] -rw------- 1 boinc boinc      1021 Feb  7 11:50 memory_monitor_summary.json
[2026-02-07 11:51:30] -rw------- 1 boinc boinc    263870 Feb  7 11:50 log.48442098._004115.job.log.tgz.1
[2026-02-07 11:51:30] -rw------- 1 boinc boinc      6312 Feb  7 11:50 heartbeat.json
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc        27 Feb  7 11:51 wrapper_checkpoint.txt
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc      8192 Feb  7 11:51 boinc_mmap_file
[2026-02-07 11:51:30] -rw------- 1 boinc boinc       747 Feb  7 11:51 pilotlog.txt
[2026-02-07 11:51:30] -rw------- 1 boinc boinc        95 Feb  7 11:51 pilot_heartbeat.json
[2026-02-07 11:51:30] -rw------- 1 boinc boinc    630492 Feb  7 11:51 log.48442098._004115.job.log.1
[2026-02-07 11:51:30] -rw------- 1 boinc boinc       357 Feb  7 11:51 output.list
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc       620 Feb  7 11:51 runtime_log
[2026-02-07 11:51:30] -rw------- 1 boinc boinc    911360 Feb  7 11:51 result.tar.gz
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc      8896 Feb  7 11:51 runtime_log.err
[2026-02-07 11:51:30] -rw------- 1 boinc boinc       657 Feb  7 11:51 nC6LDm7Ne88nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhXZKDmedLqLn.diag
[2026-02-07 11:51:30] -rw-r--r-- 1 boinc boinc     10997 Feb  7 11:51 stderr.txt
[2026-02-07 11:51:30] HITS file was successfully produced:
[2026-02-07 11:51:30] -rw------- 1 boinc boinc 182852120 Feb  7 11:50 shared/HITS.pool.root.1
[2026-02-07 11:51:30]  *** Contents of shared directory: ***
[2026-02-07 11:51:30] total 661412
[2026-02-07 11:51:30] -rw-r--r-- 2 boinc boinc 492895540 Feb  7 10:39 ATLAS.root_0
[2026-02-07 11:51:30] -rw-r--r-- 2 boinc boinc    597949 Feb  7 10:39 input.tar.gz
[2026-02-07 11:51:30] -rw-r--r-- 2 boinc boinc     15845 Feb  7 10:39 start_atlas.sh
[2026-02-07 11:51:30] -rw------- 1 boinc boinc 182852120 Feb  7 11:50 HITS.pool.root.1
[2026-02-07 11:51:30] -rw------- 1 boinc boinc    911360 Feb  7 11:51 result.tar.gz
11:51:32 (2855414): run_atlas exited; CPU time 15930.691714
11:51:32 (2855414): called boinc_finish(0)

</stderr_txt>
]]>

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